1fou

CONNECTOR PROTEIN FROM BACTERIOPHAGE PHI29

Method: X-RAY DIFFRACTION D_max: 142.0 Å Quality: GOOD

SAXS 散射曲线 SAXS Profile

P(r) 距离分布 P(r) Distribution

下载 Download SAXS (.dat) P(r) (.pr.out) CIF

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1. 结构基本信息 1. Structure Basics

条目编号 entry_id	1fou
沉积日期 deposition_date	2000-08-28
结构标题 title	CONNECTOR PROTEIN FROM BACTERIOPHAGE PHI29
关键词 keywords	alpha-helical barrel, Viral protein; VIRAL PROTEIN
实验方法 method	X-RAY DIFFRACTION

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2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)

回转半径 Rg (Guinier) rg_guinier	51.19 Å
回转半径 Rg (电子) rg_electron	50.59 Å
零角强度 I(0) i0	1752400000.00
分子量 molecular_weight	357600.0 kDa
排除体积 excluded_volume	449650 Å³
包络体积 envelope_volume	625950 Å³
水化壳体积 shell_volume	99292 Å³
包络直径 envelope_diameter	151.6 Å
壳层 Rg shell_rg	58.85 Å
包络 Rg envelope_rg	48.75 Å
形状 Rg shape_rg	50.58 Å
总 Rg total_rg	50.87 Å
总原子数 total_atoms	25272
残基数 n_residues	3084
球谐函数阶数 n_harmonics	20
q 范围 q_range	— – 0.5000 Å⁻¹
数据点数 n_points	101
壳层类型 shell_type	directional
溶剂电子密度 solvent_density	0.3340 e/Å³
壳层衬度 contrast_shell	0.0300 e/Å³
CRYSOL 版本 crysol_version	4.1.3

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3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)

最大尺寸 Dmax dmax	142.0 Å
Rg (实空间) rg_real	50.94 Å
Rg 误差 (实空间) rg_real_error	0.60 Å
I(0) (实空间) i0_real	1.7520e+09
I(0) 误差 (实空间) i0_real_error	2.6330e+07
Rg (倒空间) rg_reciprocal	51.39 Å
I(0) (倒空间) i0_reciprocal	1753000000.0000
解质量估计 total_estimate	0.8470
解质量评级 solution_quality	GOOD a GOOD solution
P(r) 峰数 n_peaks	1
主峰位置 r_peak_primary	68.7 Å
偏度 Skewness skewness	-0.004
峰度 Kurtosis kurtosis	-0.652
角度范围 angular_range	— – 0.1550 Å⁻¹
当前正则化参数 α current_alpha	0.0000
最高正则化参数 α highest_alpha	77190000.0000
实空间数据点数 n_real_points	32
GNOM 版本 gnom_version	4.1.3
质量判据 quality_criteria	AN1: 0.000; Oscil: 0.998; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.981; Smooth: 0.032

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4. 晶体学与实验 4. Crystallography & Experiment

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5. 实体与聚合体信息 (1)

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6. 折叠分类 (SCOP + CATH) 48 domains

SCOP 2.08 (12 domains)

结构域编号 domain_id	d1foua_
类 Class class	e — Multi-domain proteins (alpha and beta)
折叠类型 Fold fold	e.27 — Upper collar protein gp10 (connector protein)
超家族 Superfamily superfamily	e.27.1 — Upper collar protein gp10 (connector protein)
家族 Family family	e.27.1.1 — Upper collar protein gp10 (connector protein)

结构域编号 domain_id	d1foub_
类 Class class	e — Multi-domain proteins (alpha and beta)
折叠类型 Fold fold	e.27 — Upper collar protein gp10 (connector protein)
超家族 Superfamily superfamily	e.27.1 — Upper collar protein gp10 (connector protein)
家族 Family family	e.27.1.1 — Upper collar protein gp10 (connector protein)

结构域编号 domain_id	d1fouc_
类 Class class	e — Multi-domain proteins (alpha and beta)
折叠类型 Fold fold	e.27 — Upper collar protein gp10 (connector protein)
超家族 Superfamily superfamily	e.27.1 — Upper collar protein gp10 (connector protein)
家族 Family family	e.27.1.1 — Upper collar protein gp10 (connector protein)

结构域编号 domain_id	d1foud_
类 Class class	e — Multi-domain proteins (alpha and beta)
折叠类型 Fold fold	e.27 — Upper collar protein gp10 (connector protein)
超家族 Superfamily superfamily	e.27.1 — Upper collar protein gp10 (connector protein)
家族 Family family	e.27.1.1 — Upper collar protein gp10 (connector protein)

结构域编号 domain_id	d1foue_
类 Class class	e — Multi-domain proteins (alpha and beta)
折叠类型 Fold fold	e.27 — Upper collar protein gp10 (connector protein)
超家族 Superfamily superfamily	e.27.1 — Upper collar protein gp10 (connector protein)
家族 Family family	e.27.1.1 — Upper collar protein gp10 (connector protein)

结构域编号 domain_id	d1fouf_
类 Class class	e — Multi-domain proteins (alpha and beta)
折叠类型 Fold fold	e.27 — Upper collar protein gp10 (connector protein)
超家族 Superfamily superfamily	e.27.1 — Upper collar protein gp10 (connector protein)
家族 Family family	e.27.1.1 — Upper collar protein gp10 (connector protein)

结构域编号 domain_id	d1foug_
类 Class class	e — Multi-domain proteins (alpha and beta)
折叠类型 Fold fold	e.27 — Upper collar protein gp10 (connector protein)
超家族 Superfamily superfamily	e.27.1 — Upper collar protein gp10 (connector protein)
家族 Family family	e.27.1.1 — Upper collar protein gp10 (connector protein)

结构域编号 domain_id	d1fouh_
类 Class class	e — Multi-domain proteins (alpha and beta)
折叠类型 Fold fold	e.27 — Upper collar protein gp10 (connector protein)
超家族 Superfamily superfamily	e.27.1 — Upper collar protein gp10 (connector protein)
家族 Family family	e.27.1.1 — Upper collar protein gp10 (connector protein)

结构域编号 domain_id	d1foui_
类 Class class	e — Multi-domain proteins (alpha and beta)
折叠类型 Fold fold	e.27 — Upper collar protein gp10 (connector protein)
超家族 Superfamily superfamily	e.27.1 — Upper collar protein gp10 (connector protein)
家族 Family family	e.27.1.1 — Upper collar protein gp10 (connector protein)

结构域编号 domain_id	d1fouj_
类 Class class	e — Multi-domain proteins (alpha and beta)
折叠类型 Fold fold	e.27 — Upper collar protein gp10 (connector protein)
超家族 Superfamily superfamily	e.27.1 — Upper collar protein gp10 (connector protein)
家族 Family family	e.27.1.1 — Upper collar protein gp10 (connector protein)

结构域编号 domain_id	d1fouk_
类 Class class	e — Multi-domain proteins (alpha and beta)
折叠类型 Fold fold	e.27 — Upper collar protein gp10 (connector protein)
超家族 Superfamily superfamily	e.27.1 — Upper collar protein gp10 (connector protein)
家族 Family family	e.27.1.1 — Upper collar protein gp10 (connector protein)

结构域编号 domain_id	d1foul_
类 Class class	e — Multi-domain proteins (alpha and beta)
折叠类型 Fold fold	e.27 — Upper collar protein gp10 (connector protein)
超家族 Superfamily superfamily	e.27.1 — Upper collar protein gp10 (connector protein)
家族 Family family	e.27.1.1 — Upper collar protein gp10 (connector protein)

CATH v4.4 (36 domains)

结构域编号 domain_id	1fouA01
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	10 — Orthogonal Bundle
拓扑 Topology topology	246 — Serum Albumin; Chain A, Domain 1
同源超家族 H-superfamily homologous superfamily	30 —

结构域编号 domain_id	1fouA02
类 Class class	2 — Mainly Beta
架构 Architecture architecture	40 — Beta Barrel
拓扑 Topology topology	500 — Upper collar protein gp10 (connector protein) fold
同源超家族 H-superfamily homologous superfamily	10 — Upper collar protein gp10 (connector protein)

结构域编号 domain_id	1fouA03
类 Class class	3 — Alpha Beta
架构 Architecture architecture	30 — 2-Layer Sandwich
拓扑 Topology topology	1350 — Crambin
同源超家族 H-superfamily homologous superfamily	20 — Bacteriophage PHI-29 conector. Domain 3

结构域编号 domain_id	1fouB01
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	10 — Orthogonal Bundle
拓扑 Topology topology	246 — Serum Albumin; Chain A, Domain 1
同源超家族 H-superfamily homologous superfamily	30 —

结构域编号 domain_id	1fouB02
类 Class class	2 — Mainly Beta
架构 Architecture architecture	40 — Beta Barrel
拓扑 Topology topology	500 — Upper collar protein gp10 (connector protein) fold
同源超家族 H-superfamily homologous superfamily	10 — Upper collar protein gp10 (connector protein)

结构域编号 domain_id	1fouB03
类 Class class	3 — Alpha Beta
架构 Architecture architecture	30 — 2-Layer Sandwich
拓扑 Topology topology	1350 — Crambin
同源超家族 H-superfamily homologous superfamily	20 — Bacteriophage PHI-29 conector. Domain 3

结构域编号 domain_id	1fouC01
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	10 — Orthogonal Bundle
拓扑 Topology topology	246 — Serum Albumin; Chain A, Domain 1
同源超家族 H-superfamily homologous superfamily	30 —

结构域编号 domain_id	1fouC02
类 Class class	2 — Mainly Beta
架构 Architecture architecture	40 — Beta Barrel
拓扑 Topology topology	500 — Upper collar protein gp10 (connector protein) fold
同源超家族 H-superfamily homologous superfamily	10 — Upper collar protein gp10 (connector protein)

结构域编号 domain_id	1fouC03
类 Class class	3 — Alpha Beta
架构 Architecture architecture	30 — 2-Layer Sandwich
拓扑 Topology topology	1350 — Crambin
同源超家族 H-superfamily homologous superfamily	20 — Bacteriophage PHI-29 conector. Domain 3

结构域编号 domain_id	1fouD01
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	10 — Orthogonal Bundle
拓扑 Topology topology	246 — Serum Albumin; Chain A, Domain 1
同源超家族 H-superfamily homologous superfamily	30 —

结构域编号 domain_id	1fouD02
类 Class class	2 — Mainly Beta
架构 Architecture architecture	40 — Beta Barrel
拓扑 Topology topology	500 — Upper collar protein gp10 (connector protein) fold
同源超家族 H-superfamily homologous superfamily	10 — Upper collar protein gp10 (connector protein)

结构域编号 domain_id	1fouD03
类 Class class	3 — Alpha Beta
架构 Architecture architecture	30 — 2-Layer Sandwich
拓扑 Topology topology	1350 — Crambin
同源超家族 H-superfamily homologous superfamily	20 — Bacteriophage PHI-29 conector. Domain 3

结构域编号 domain_id	1fouE01
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	10 — Orthogonal Bundle
拓扑 Topology topology	246 — Serum Albumin; Chain A, Domain 1
同源超家族 H-superfamily homologous superfamily	30 —

结构域编号 domain_id	1fouE02
类 Class class	2 — Mainly Beta
架构 Architecture architecture	40 — Beta Barrel
拓扑 Topology topology	500 — Upper collar protein gp10 (connector protein) fold
同源超家族 H-superfamily homologous superfamily	10 — Upper collar protein gp10 (connector protein)

结构域编号 domain_id	1fouE03
类 Class class	3 — Alpha Beta
架构 Architecture architecture	30 — 2-Layer Sandwich
拓扑 Topology topology	1350 — Crambin
同源超家族 H-superfamily homologous superfamily	20 — Bacteriophage PHI-29 conector. Domain 3

结构域编号 domain_id	1fouF01
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	10 — Orthogonal Bundle
拓扑 Topology topology	246 — Serum Albumin; Chain A, Domain 1
同源超家族 H-superfamily homologous superfamily	30 —

结构域编号 domain_id	1fouF02
类 Class class	2 — Mainly Beta
架构 Architecture architecture	40 — Beta Barrel
拓扑 Topology topology	500 — Upper collar protein gp10 (connector protein) fold
同源超家族 H-superfamily homologous superfamily	10 — Upper collar protein gp10 (connector protein)

结构域编号 domain_id	1fouF03
类 Class class	3 — Alpha Beta
架构 Architecture architecture	30 — 2-Layer Sandwich
拓扑 Topology topology	1350 — Crambin
同源超家族 H-superfamily homologous superfamily	20 — Bacteriophage PHI-29 conector. Domain 3

结构域编号 domain_id	1fouG01
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	10 — Orthogonal Bundle
拓扑 Topology topology	246 — Serum Albumin; Chain A, Domain 1
同源超家族 H-superfamily homologous superfamily	30 —

结构域编号 domain_id	1fouG02
类 Class class	2 — Mainly Beta
架构 Architecture architecture	40 — Beta Barrel
拓扑 Topology topology	500 — Upper collar protein gp10 (connector protein) fold
同源超家族 H-superfamily homologous superfamily	10 — Upper collar protein gp10 (connector protein)

结构域编号 domain_id	1fouG03
类 Class class	3 — Alpha Beta
架构 Architecture architecture	30 — 2-Layer Sandwich
拓扑 Topology topology	1350 — Crambin
同源超家族 H-superfamily homologous superfamily	20 — Bacteriophage PHI-29 conector. Domain 3

结构域编号 domain_id	1fouH01
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	10 — Orthogonal Bundle
拓扑 Topology topology	246 — Serum Albumin; Chain A, Domain 1
同源超家族 H-superfamily homologous superfamily	30 —

结构域编号 domain_id	1fouH02
类 Class class	2 — Mainly Beta
架构 Architecture architecture	40 — Beta Barrel
拓扑 Topology topology	500 — Upper collar protein gp10 (connector protein) fold
同源超家族 H-superfamily homologous superfamily	10 — Upper collar protein gp10 (connector protein)

结构域编号 domain_id	1fouH03
类 Class class	3 — Alpha Beta
架构 Architecture architecture	30 — 2-Layer Sandwich
拓扑 Topology topology	1350 — Crambin
同源超家族 H-superfamily homologous superfamily	20 — Bacteriophage PHI-29 conector. Domain 3

结构域编号 domain_id	1fouI01
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	10 — Orthogonal Bundle
拓扑 Topology topology	246 — Serum Albumin; Chain A, Domain 1
同源超家族 H-superfamily homologous superfamily	30 —

结构域编号 domain_id	1fouI02
类 Class class	2 — Mainly Beta
架构 Architecture architecture	40 — Beta Barrel
拓扑 Topology topology	500 — Upper collar protein gp10 (connector protein) fold
同源超家族 H-superfamily homologous superfamily	10 — Upper collar protein gp10 (connector protein)

结构域编号 domain_id	1fouI03
类 Class class	3 — Alpha Beta
架构 Architecture architecture	30 — 2-Layer Sandwich
拓扑 Topology topology	1350 — Crambin
同源超家族 H-superfamily homologous superfamily	20 — Bacteriophage PHI-29 conector. Domain 3

结构域编号 domain_id	1fouJ01
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	10 — Orthogonal Bundle
拓扑 Topology topology	246 — Serum Albumin; Chain A, Domain 1
同源超家族 H-superfamily homologous superfamily	30 —

结构域编号 domain_id	1fouJ02
类 Class class	2 — Mainly Beta
架构 Architecture architecture	40 — Beta Barrel
拓扑 Topology topology	500 — Upper collar protein gp10 (connector protein) fold
同源超家族 H-superfamily homologous superfamily	10 — Upper collar protein gp10 (connector protein)

结构域编号 domain_id	1fouJ03
类 Class class	3 — Alpha Beta
架构 Architecture architecture	30 — 2-Layer Sandwich
拓扑 Topology topology	1350 — Crambin
同源超家族 H-superfamily homologous superfamily	20 — Bacteriophage PHI-29 conector. Domain 3

结构域编号 domain_id	1fouK01
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	10 — Orthogonal Bundle
拓扑 Topology topology	246 — Serum Albumin; Chain A, Domain 1
同源超家族 H-superfamily homologous superfamily	30 —

结构域编号 domain_id	1fouK02
类 Class class	2 — Mainly Beta
架构 Architecture architecture	40 — Beta Barrel
拓扑 Topology topology	500 — Upper collar protein gp10 (connector protein) fold
同源超家族 H-superfamily homologous superfamily	10 — Upper collar protein gp10 (connector protein)

结构域编号 domain_id	1fouK03
类 Class class	3 — Alpha Beta
架构 Architecture architecture	30 — 2-Layer Sandwich
拓扑 Topology topology	1350 — Crambin
同源超家族 H-superfamily homologous superfamily	20 — Bacteriophage PHI-29 conector. Domain 3

结构域编号 domain_id	1fouL01
类 Class class	1 — Mainly Alpha
架构 Architecture architecture	10 — Orthogonal Bundle
拓扑 Topology topology	246 — Serum Albumin; Chain A, Domain 1
同源超家族 H-superfamily homologous superfamily	30 —

结构域编号 domain_id	1fouL02
类 Class class	2 — Mainly Beta
架构 Architecture architecture	40 — Beta Barrel
拓扑 Topology topology	500 — Upper collar protein gp10 (connector protein) fold
同源超家族 H-superfamily homologous superfamily	10 — Upper collar protein gp10 (connector protein)

结构域编号 domain_id	1fouL03
类 Class class	3 — Alpha Beta
架构 Architecture architecture	30 — 2-Layer Sandwich
拓扑 Topology topology	1350 — Crambin
同源超家族 H-superfamily homologous superfamily	20 — Bacteriophage PHI-29 conector. Domain 3

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7. 引用文献 (1)

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晶胞边长 a length_a	177.160 Å
晶胞边长 b length_b	169.240 Å
晶胞边长 c length_c	185.440 Å
晶胞夹角 α angle_alpha	90.00 °
晶胞夹角 β angle_beta	114.10 °
晶胞夹角 γ angle_gamma	90.00 °
晶胞分子数 Z z_pdb	48

空间群 space_group	C 1 2 1
空间群编号 int_tables_number	5
晶系 crystal_system	—

分辨率 resolution	3.200 Å
最低分辨率 resolution_low	9.000 Å
R 因子 r_factor	0.2700
R_work r_work	0.2900
R_free r_free	0.3600

描述 description	UPPER COLLAR PROTEIN
分子量 formula_weight	35962.3 kDa
来源方法 src_method	man
拷贝数 entity_count	12

聚合体类型 type	polypeptide(L)
链编号 strand_id	A,B,C,D,E,F,G,H,I,J,K,L
原子数 atom_count	25272

CONNECTOR PROTEIN FROM BACTERIOPHAGE PHI29

SAXS 散射曲线 SAXS Profile

P(r) 距离分布 P(r) Distribution

1. 结构基本信息 1. Structure Basics

2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)

3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)

4. 晶体学与实验 4. Crystallography & Experiment

晶胞参数 Unit Cell

对称性 Symmetry

精修参数 Refinement

衍射实验 Diffraction

5. 实体与聚合体信息 (1)

Entity 1 polymer

聚合体 Polymer

来源 Source

6. 折叠分类 (SCOP + CATH) 48 domains

SCOP 2.08 (12 domains)

CATH v4.4 (36 domains)

7. 引用文献 (1)

8. 文件与曲线 (10)

Files (7)

Curves (3)

来源生物 organism	Bacillus phage phi29
NCBI 分类编号 ncbi_taxonomy_id	10756
宿主生物 host_organism	Bacillus subtilis

fit	/app/data/saxs_computation/fo/1fou/1fou.fit
pddf	/app/data/pr_computation/fo/1fou/1fou.pr.out
profile	/app/data/saxs_computation/fo/1fou/1fou.dat