1h5w
2.1A Bacteriophage Phi-29 Connector
SAXS 散射曲线 SAXS Profile
P(r) 距离分布 P(r) Distribution
1. 结构基本信息 1. Structure Basics
| 条目编号 entry_id | 1h5w |
| 沉积日期 deposition_date | 2001-05-28 |
| 结构标题 title | 2.1A Bacteriophage Phi-29 Connector |
| 关键词 keywords | VIRUS, CONNECTOR, PORTAL, SH3-LIKE, HELIX BUNDLE; VIRUS |
| 实验方法 method | X-RAY DIFFRACTION |
2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)
| 回转半径 Rg (Guinier) rg_guinier | 34.88 Å |
| 回转半径 Rg (电子) rg_electron | 34.47 Å |
| 零角强度 I(0) i0 | 115776000.00 |
| 分子量 molecular_weight | 87823.0 kDa |
| 排除体积 excluded_volume | 110530 ų |
| 包络体积 envelope_volume | 143590 ų |
| 水化壳体积 shell_volume | 36857 ų |
| 包络直径 envelope_diameter | 131.2 Å |
| 壳层 Rg shell_rg | 38.29 Å |
| 包络 Rg envelope_rg | 35.39 Å |
| 形状 Rg shape_rg | 34.47 Å |
| 总 Rg total_rg | 34.77 Å |
| 总原子数 total_atoms | 6206 |
| 残基数 n_residues | 758 |
| 球谐函数阶数 n_harmonics | 20 |
| q 范围 q_range | — – 0.5000 Å−1 |
| 数据点数 n_points | 101 |
| 壳层类型 shell_type | directional |
| 溶剂电子密度 solvent_density | 0.3340 e/ų |
| 壳层衬度 contrast_shell | 0.0300 e/ų |
| CRYSOL 版本 crysol_version | 4.1.3 |
3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)
| 最大尺寸 Dmax dmax | 121.3 Å |
| Rg (实空间) rg_real | 35.13 Å |
| Rg 误差 (实空间) rg_real_error | 1.33 Å |
| I(0) (实空间) i0_real | 1.1580e+08 |
| I(0) 误差 (实空间) i0_real_error | 2.3160e+06 |
| Rg (倒空间) rg_reciprocal | 34.98 Å |
| I(0) (倒空间) i0_reciprocal | 115800000.0000 |
| 解质量估计 total_estimate | 0.8396 |
| 解质量评级 solution_quality | GOOD a GOOD solution |
| P(r) 峰数 n_peaks | 1 |
| 主峰位置 r_peak_primary | 118.7 Å |
| 偏度 Skewness skewness | 0.518 |
| 峰度 Kurtosis kurtosis | -0.279 |
| 角度范围 angular_range | — – 0.2250 Å−1 |
| 当前正则化参数 α current_alpha | 0.0000 |
| 最高正则化参数 α highest_alpha | 23600000.0000 |
| 实空间数据点数 n_real_points | 46 |
| GNOM 版本 gnom_version | 4.1.3 |
| 质量判据 quality_criteria | AN1: 0.000; Oscil: 0.774; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.809; Smooth: 0.780 |
4. 晶体学与实验 4. Crystallography & Experiment
5. 实体与聚合体信息 (3)
6. 折叠分类 (SCOP + CATH) 12 domains
SCOP 2.08 (3 domains)
| 结构域编号 domain_id | d1h5wa_ |
| 类 Class class | e — Multi-domain proteins (alpha and beta) |
| 折叠类型 Fold fold | e.27 — Upper collar protein gp10 (connector protein) |
| 超家族 Superfamily superfamily | e.27.1 — Upper collar protein gp10 (connector protein) |
| 家族 Family family | e.27.1.1 — Upper collar protein gp10 (connector protein) |
| 结构域编号 domain_id | d1h5wb_ |
| 类 Class class | e — Multi-domain proteins (alpha and beta) |
| 折叠类型 Fold fold | e.27 — Upper collar protein gp10 (connector protein) |
| 超家族 Superfamily superfamily | e.27.1 — Upper collar protein gp10 (connector protein) |
| 家族 Family family | e.27.1.1 — Upper collar protein gp10 (connector protein) |
| 结构域编号 domain_id | d1h5wc_ |
| 类 Class class | e — Multi-domain proteins (alpha and beta) |
| 折叠类型 Fold fold | e.27 — Upper collar protein gp10 (connector protein) |
| 超家族 Superfamily superfamily | e.27.1 — Upper collar protein gp10 (connector protein) |
| 家族 Family family | e.27.1.1 — Upper collar protein gp10 (connector protein) |
CATH v4.4 (9 domains)
| 结构域编号 domain_id | 1h5wA01 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 10 — Orthogonal Bundle |
| 拓扑 Topology topology | 246 — Serum Albumin; Chain A, Domain 1 |
| 同源超家族 H-superfamily homologous superfamily | 30 — |
| 结构域编号 domain_id | 1h5wA02 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 40 — Beta Barrel |
| 拓扑 Topology topology | 500 — Upper collar protein gp10 (connector protein) fold |
| 同源超家族 H-superfamily homologous superfamily | 10 — Upper collar protein gp10 (connector protein) |
| 结构域编号 domain_id | 1h5wA03 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 1350 — Crambin |
| 同源超家族 H-superfamily homologous superfamily | 20 — Bacteriophage PHI-29 conector. Domain 3 |
| 结构域编号 domain_id | 1h5wB01 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 10 — Orthogonal Bundle |
| 拓扑 Topology topology | 246 — Serum Albumin; Chain A, Domain 1 |
| 同源超家族 H-superfamily homologous superfamily | 30 — |
| 结构域编号 domain_id | 1h5wB02 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 40 — Beta Barrel |
| 拓扑 Topology topology | 500 — Upper collar protein gp10 (connector protein) fold |
| 同源超家族 H-superfamily homologous superfamily | 10 — Upper collar protein gp10 (connector protein) |
| 结构域编号 domain_id | 1h5wB03 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 1350 — Crambin |
| 同源超家族 H-superfamily homologous superfamily | 20 — Bacteriophage PHI-29 conector. Domain 3 |
| 结构域编号 domain_id | 1h5wC01 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 10 — Orthogonal Bundle |
| 拓扑 Topology topology | 246 — Serum Albumin; Chain A, Domain 1 |
| 同源超家族 H-superfamily homologous superfamily | 30 — |
| 结构域编号 domain_id | 1h5wC02 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 40 — Beta Barrel |
| 拓扑 Topology topology | 500 — Upper collar protein gp10 (connector protein) fold |
| 同源超家族 H-superfamily homologous superfamily | 10 — Upper collar protein gp10 (connector protein) |
| 结构域编号 domain_id | 1h5wC03 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 1350 — Crambin |
| 同源超家族 H-superfamily homologous superfamily | 20 — Bacteriophage PHI-29 conector. Domain 3 |