HCV NS3 SERINE PROTEASE
Hepatitis C virus
State in the Current Structure
| Assembly | Oligomeric State | Construct | Mutations and Modifications | Ligands, Ions and Associated Components | Method and Experimental Conditions | Structure Quality |
|---|---|---|---|---|---|---|
| 1 | Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count | Chain A; UniProt 1026–1205 | Fragment:Protease domain Mutation:A164T | NS4A COFACTOR × 1 ZN ZINC ION × 1 TRL {1-[2-(1-FORMYL-PROPYL)-3-METHANESULFONYLAMINO-PYRROLIDINE-1-CARBONYL]-2-METHYL-PROPYL}-CARBAMIC ACID TERT-BUTYL ESTER × 1 | X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, SITTING DROP;pH 6.5;277 K;Inhibitor soaked into crystal generated according to Kim et al. (1996) Cell, 87, 343-355, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 277.0K | Resolution 2.60 Å R-free 0.220 |
| 2 | Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count | Chain B; UniProt 1026–1205 | Fragment:Protease domain Mutation:A164T | NS4A COFACTOR × 1 ZN ZINC ION × 1 | X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, SITTING DROP;pH 6.5;277 K;Inhibitor soaked into crystal generated according to Kim et al. (1996) Cell, 87, 343-355, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 277.0K | Resolution 2.60 Å R-free 0.220 |
| 3 | Protein heterocomplex Heteromer Protein × 4 PDB declaration: tetrameric(4) Consistent with protein copy count | Chain A; UniProt 1026–1205 Chain B; UniProt 1026–1205 | Fragment:Protease domain Mutation:A164T | NS4A COFACTOR × 2 ZN ZINC ION × 2 TRL {1-[2-(1-FORMYL-PROPYL)-3-METHANESULFONYLAMINO-PYRROLIDINE-1-CARBONYL]-2-METHYL-PROPYL}-CARBAMIC ACID TERT-BUTYL ESTER × 1 | X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, SITTING DROP;pH 6.5;277 K;Inhibitor soaked into crystal generated according to Kim et al. (1996) Cell, 87, 343-355, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 277.0K | Resolution 2.60 Å R-free 0.220 |
Other States of the Same Protein in the Database
Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.
| Other PDB | Difference from Current Entry 1N1L | Assembly / Oligomeric State | Construct | Mutations and Modifications | Ligands, Ions and Non-polymers | Method and Experimental Conditions | Structure Quality |
|---|---|---|---|---|---|---|---|
| 1A1R HCV NS3 PROTEASE DOMAIN:NS4A PEPTIDE COMPLEX Deposited 1997-12-15 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 2 PDB declaration: dimeric |
Chain A
1026–1205(180 aa)
Fragment:PROTEASE DOMAIN
Chain C
1677–1695(19 aa)
Fragment:ACTIVATION DOMAIN
|
Mutation:INS(ASMTGGQQMG) AT N-TERMINUS, INS(GSHHHHHH) AT C-TERMINUS Mutation:INS(KK) AT N-TERMINUS, C22S, INS(KK) AT C-TERMINUS | ZN ZINC ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6.5;PROTEIN WAS CRYSTALLIZED FROM 1.8 M NACL, 100 MM NA/K PHOSPHATE, 10 MM B-MERCAPTOETHANOL, 100 MM MES, PH 6.5.
|
Resolution 2.50 Å R-free 0.261 |
| 1A1R HCV NS3 PROTEASE DOMAIN:NS4A PEPTIDE COMPLEX Deposited 1997-12-15 | Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics | Assembly 2 Protein homooligomer Homooligomer;Protein × 2 PDB declaration: dimeric |
Chain B
1026–1205(180 aa)
Fragment:PROTEASE DOMAIN
Chain D
1677–1695(19 aa)
Fragment:ACTIVATION DOMAIN
|
Mutation:INS(ASMTGGQQMG) AT N-TERMINUS, INS(GSHHHHHH) AT C-TERMINUS Mutation:INS(KK) AT N-TERMINUS, C22S, INS(KK) AT C-TERMINUS | ZN ZINC ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6.5;PROTEIN WAS CRYSTALLIZED FROM 1.8 M NACL, 100 MM NA/K PHOSPHATE, 10 MM B-MERCAPTOETHANOL, 100 MM MES, PH 6.5.
|
Resolution 2.50 Å R-free 0.261 |
| 1A1R HCV NS3 PROTEASE DOMAIN:NS4A PEPTIDE COMPLEX Deposited 1997-12-15 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 3 Protein homooligomer Homooligomer;Protein × 4 PDB declaration: tetrameric |
Chain A
1026–1205(180 aa)
Fragment:PROTEASE DOMAIN
Chain B
1026–1205(180 aa)
Fragment:PROTEASE DOMAIN
Chain C
1677–1695(19 aa)
Fragment:ACTIVATION DOMAIN
Chain D
1677–1695(19 aa)
Fragment:ACTIVATION DOMAIN
|
Mutation:INS(ASMTGGQQMG) AT N-TERMINUS, INS(GSHHHHHH) AT C-TERMINUS Mutation:INS(ASMTGGQQMG) AT N-TERMINUS, INS(GSHHHHHH) AT C-TERMINUS Mutation:INS(KK) AT N-TERMINUS, C22S, INS(KK) AT C-TERMINUS Mutation:INS(KK) AT N-TERMINUS, C22S, INS(KK) AT C-TERMINUS | ZN ZINC ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6.5;PROTEIN WAS CRYSTALLIZED FROM 1.8 M NACL, 100 MM NA/K PHOSPHATE, 10 MM B-MERCAPTOETHANOL, 100 MM MES, PH 6.5.
|
Resolution 2.50 Å R-free 0.261 |
| 1A1V HEPATITIS C VIRUS NS3 HELICASE DOMAIN COMPLEXED WITH SINGLE STRANDED SDNA Deposited 1997-12-17 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein–DNA Monomer;Protein × 1 PDB declaration: dimeric |
Chain A
1193–1657(465 aa)
Fragment:HELICASE DOMAIN
|
Mutation:;N-TERMINAL MET, K221Q, A277G, S301L, S332P, S410A, G530E, R582W, AND A 10 RESIDUE (GSGSHHHHHH) HISTIDINE TAG ATTACHED TO THE C-TERMINUS ; Non-standard monomer:Yes (specific site not provided by mmCIF) | SO4 SULFATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 8;pH 8.0
|
Resolution 2.20 Å R-free 0.287 |
| 1CWX SOLUTION STRUCTURE OF THE HEPATITIS C VIRUS N-TERMINAL CAPSID PROTEIN 2-45 [C-HCV(2-45)] Deposited 1999-08-27 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer;Protein × 1 PDB declaration: monomeric |
Chain A
2–45(44 aa)
Fragment:N-TERMINAL FRAGMENT
|
Not recorded | No recorded non-water small molecule |
SOLUTION NMR
NMR measurement conditions
pH 5.9;293 K;Ionic strength (raw mmCIF value) 0.1M NACL;Pressure AMBIENT
NMR sample composition
40% D2-TRIFLUOROETHANOL;0.01M SODIUM PHOSPHATE;0.1M NACL
|
Resolution not provided |
| 1HEI STRUCTURE OF THE HEPATITIS C VIRUS RNA HELICASE DOMAIN Deposited 1997-03-31 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 2 PDB declaration: dimeric |
Chain A
1206–1656(451 aa)
Chain B
1206–1656(451 aa)
|
Not recorded | CA CALCIUM ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6.5;50MM CA ACETATE, 20MM NACACODYLATE PH 6.5, 8% PEG5000
|
Resolution 2.10 Å R-free 0.320 |
| 1JR6 Solution Structure of an Engineered Arginine-rich Subdomain 2 of the Hepatitis C Virus NS3 RNA Helicase Deposited 2001-08-10 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer;Protein × 1 PDB declaration: monomeric |
Chain A
1353–1507(155 aa)
Fragment:arginine-rich subdomain 2
|
Not recorded | No recorded non-water small molecule |
SOLUTION NMR
NMR measurement conditions
pH 6.5;298 K;Ionic strength (raw mmCIF value) 75 mM KiPO4;Pressure ambient
NMR sample composition
0.6 mM, U-15N,13C; | 75 mM PHOSPHATE BUFFER; 5 mM DTT, 90%H2O, 10%D2O, 0.015% NaN3
NMR sample composition
0.6 mM, U-15N,13C; | 75 mM PHOSPHATE BUFFER; 5 mM DTT, 99%D2O, 0.015% NaN3
NMR sample composition
0.3 mM, U-15N | 75 mM PHOSPHATE BUFFER; 5 mM DTT, 90%H2O, 10%D2O, 0.015% NaN3
|
Resolution not provided |
| 1ONB Solution structure of an engineered arginine-rich subdomain 2 of the hepatitis C virus NS3 RNA helicase Deposited 2003-02-27 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer;Protein × 1 PDB declaration: monomeric |
Chain A
1353–1507(155 aa)
Fragment:Arginine-rich subdomain 2
|
Not recorded | No recorded non-water small molecule |
SOLUTION NMR
NMR measurement conditions
pH 6.5;298 K;Ionic strength (raw mmCIF value) 75 mM KIPO4;Pressure ambient
NMR sample composition
0.6 mM, U-15N,13C | 90% H2O/10% D2O
NMR sample composition
0.6 mM, U-15N,13C | 99.9%D2O
|
Resolution not provided |
| 1R7C NMR structure of the membrane anchor domain (1-31) of the nonstructural protein 5A (NS5A) of hepatitis C virus (Minimized average structure, Sample in 50% tfe) Deposited 2003-10-21 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer;Protein × 1 PDB declaration: monomeric |
Chain A
1973–2003(31 aa)
Fragment:Nonstructural protein NS5A (P56)(residues 1973-2003 OF SWISS-PROT SEQUENCE P27958)
|
Not recorded | No recorded non-water small molecule |
SOLUTION NMR
NMR measurement conditions
pH 4.5;293 K;Pressure ambient
NMR sample composition
1.2mM NS5A[1-31], 10mM DTTd10 | H2O/TFEd2 50/50 (v/v)
|
Resolution not provided |
| 1R7D NMR structure of the membrane anchor domain (1-31) of the nonstructural protein 5A (NS5A) of hepatitis C virus (Ensemble of 51 structures, sample in 50% tfe) Deposited 2003-10-21 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer;Protein × 1 PDB declaration: monomeric |
Chain A
1973–2003(31 aa)
Fragment:Nonstructural protein NS5A (P56)(residues 1973-2003 of Swiss-Prot sequence P27958)
|
Not recorded | No recorded non-water small molecule |
SOLUTION NMR
NMR measurement conditions
pH 4.5;293 K;Pressure ambient
NMR sample composition
1.2mM NS5A[1-31], 10mM DTTd10 | H2O/TFEd2 50/50 (v/v)
|
Resolution not provided |
| 1R7E NMR structure of the membrane anchor domain (1-31) of the nonstructural protein 5A (NS5A) of hepatitis C virus (Minimized average structure. Sample in 100mM SDS). Deposited 2003-10-21 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer;Protein × 1 PDB declaration: monomeric |
Chain A
1973–2003(31 aa)
Fragment:Nonstructural protein NS5A (P56)(residues 1973-2003 OF SWISS-PROT SEQUENCE P27958)
|
Not recorded | No recorded non-water small molecule |
SOLUTION NMR
NMR measurement conditions
pH 6;313 K;Pressure ambient
NMR sample composition
1.2mM NS5A[1-31], 10mM DTTd10 | 100mM SDS in H2O/D2O 95/5 (v/v)
|
Resolution not provided |
| 1R7F NMR structure of the membrane anchor domain (1-31) of the nonstructural protein 5A (NS5A) of hepatitis C virus (Ensemble of 43 structures. Sample in 100mM SDS) Deposited 2003-10-21 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer;Protein × 1 PDB declaration: monomeric |
Chain A
1973–2003(31 aa)
Fragment:Nonstructural protein NS5A (P56)(residues 1973-2003 of Swiss-Prot sequence P27958)
|
Not recorded | No recorded non-water small molecule |
SOLUTION NMR
NMR measurement conditions
pH 6;313 K;Pressure ambient
NMR sample composition
1.2mM NS5A[1-31], 10mM DTTd10 | 100mM SDS in H2O/D2O 95/5 (v/v)
|
Resolution not provided |
| 1R7G NMR structure of the membrane anchor domain (1-31) of the nonstructural protein 5A (NS5A) of hepatitis C virus (Minimized average structure, Sample in 100mM DPC) Deposited 2003-10-21 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer;Protein × 1 PDB declaration: monomeric |
Chain A
1973–2003(31 aa)
Fragment:Nonstructural protein NS5A (P56)(residues 1973-2003 OF SWISS-PROT SEQUENCE P27958)
|
Not recorded | No recorded non-water small molecule |
SOLUTION NMR
NMR measurement conditions
pH 6;313 K;Pressure ambient
NMR sample composition
1.2mM NS5A[1-31], 10mM DTTd10 | 100mM DPC in H2O/D2O 95/5 (v/v)
|
Resolution not provided |
| 1RGQ M9A HCV Protease complex with pentapeptide keto-amide inhibitor Deposited 2003-11-12 | Different construct Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer;Protein × 4 PDB declaration: tetrameric |
Chain A
1026–1206(181 aa)
Fragment:RESIDUES 1027-1207
Chain B
1026–1206(181 aa)
Fragment:RESIDUES 1027-1207
|
Not recorded | ZN ZINC ION × 2 AKP N-(PYRAZIN-2-YLCARBONYL)LEUCYLISOLEUCYL-N~1~-{1-[2-({1-CARBOXY-2-[4-(PHOSPHONOOXY)PHENYL]ETHYL}AMINO)-1,1-DIHYDROXY-2-OXOETHYL]BUT-3-ENYL}-3-CYCLOHEXYLALANINAMIDE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.5;298 K;0.2M N/KPO4, 2.0M NaCl, 10mM MES, 15% glycerol, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.90 Å R-free 0.312 |
| 2HD0 Structure of the catalytic domain of hepatitis C virus NS2 Deposited 2006-06-19 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 2 PDB declaration: dimeric |
Chain A
902–1025(124 aa)
Fragment:protease domain of NS2
Chain B
902–1025(124 aa)
Fragment:protease domain of NS2
|
Not recorded | BOG octyl beta-D-glucopyranoside × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.5;277 K;0.1 M Tris pH 8.5
0.8 M Ammonium Acetate
0.25 M Lithium Chloride
12% PEG 3350, VAPOR DIFFUSION, HANGING DROP, temperature 277.0K
|
Resolution 2.28 Å R-free 0.268 |
| 2HD0 Structure of the catalytic domain of hepatitis C virus NS2 Deposited 2006-06-19 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein homooligomer Homooligomer;Protein × 2 PDB declaration: dimeric |
Chain C
902–1025(124 aa)
Fragment:protease domain of NS2
Chain D
902–1025(124 aa)
Fragment:protease domain of NS2
|
Not recorded | BOG octyl beta-D-glucopyranoside × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.5;277 K;0.1 M Tris pH 8.5
0.8 M Ammonium Acetate
0.25 M Lithium Chloride
12% PEG 3350, VAPOR DIFFUSION, HANGING DROP, temperature 277.0K
|
Resolution 2.28 Å R-free 0.268 |
| 2HD0 Structure of the catalytic domain of hepatitis C virus NS2 Deposited 2006-06-19 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 3 Protein homooligomer Homooligomer;Protein × 2 PDB declaration: dimeric |
Chain E
902–1025(124 aa)
Fragment:protease domain of NS2
Chain F
902–1025(124 aa)
Fragment:protease domain of NS2
|
Not recorded | BOG octyl beta-D-glucopyranoside × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.5;277 K;0.1 M Tris pH 8.5
0.8 M Ammonium Acetate
0.25 M Lithium Chloride
12% PEG 3350, VAPOR DIFFUSION, HANGING DROP, temperature 277.0K
|
Resolution 2.28 Å R-free 0.268 |
| 2HD0 Structure of the catalytic domain of hepatitis C virus NS2 Deposited 2006-06-19 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 4 Protein homooligomer Homooligomer;Protein × 2 PDB declaration: dimeric |
Chain G
902–1025(124 aa)
Fragment:protease domain of NS2
Chain H
902–1025(124 aa)
Fragment:protease domain of NS2
|
Not recorded | BOG octyl beta-D-glucopyranoside × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.5;277 K;0.1 M Tris pH 8.5
0.8 M Ammonium Acetate
0.25 M Lithium Chloride
12% PEG 3350, VAPOR DIFFUSION, HANGING DROP, temperature 277.0K
|
Resolution 2.28 Å R-free 0.268 |
| 2HD0 Structure of the catalytic domain of hepatitis C virus NS2 Deposited 2006-06-19 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 5 Protein homooligomer Homooligomer;Protein × 2 PDB declaration: dimeric |
Chain I
902–1025(124 aa)
Fragment:protease domain of NS2
Chain J
902–1025(124 aa)
Fragment:protease domain of NS2
|
Not recorded | BOG octyl beta-D-glucopyranoside × 2 DMU DECYL-BETA-D-MALTOPYRANOSIDE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.5;277 K;0.1 M Tris pH 8.5
0.8 M Ammonium Acetate
0.25 M Lithium Chloride
12% PEG 3350, VAPOR DIFFUSION, HANGING DROP, temperature 277.0K
|
Resolution 2.28 Å R-free 0.268 |
| 2HD0 Structure of the catalytic domain of hepatitis C virus NS2 Deposited 2006-06-19 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 6 Protein homooligomer Homooligomer;Protein × 2 PDB declaration: dimeric |
Chain K
902–1025(124 aa)
Fragment:protease domain of NS2
Chain L
902–1025(124 aa)
Fragment:protease domain of NS2
|
Not recorded | BOG octyl beta-D-glucopyranoside × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.5;277 K;0.1 M Tris pH 8.5
0.8 M Ammonium Acetate
0.25 M Lithium Chloride
12% PEG 3350, VAPOR DIFFUSION, HANGING DROP, temperature 277.0K
|
Resolution 2.28 Å R-free 0.268 |
| 2JXF The solution structure of HCV NS4B(40-69) Deposited 2007-11-19 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer;Protein × 1 PDB declaration: monomeric |
Chain A
1751–1780(30 aa)
Fragment:Non-structural protein 4B, UNP residues 1751-1780
|
Not recorded | No recorded non-water small molecule |
SOLUTION NMR
NMR measurement conditions
pH 6.5;298 K;Ionic strength (raw mmCIF value) 0;Pressure ambient
NMR sample composition
1mM NS4B(40-69); 50% v/v Trifluoro Ethanol D2OH; 50% v/v H2O | 50% v/v Trifluoro Ethanol D2OH; 50% v/v H2O
|
Resolution not provided |
| 2KDR Solution structure of HCV NS4B(227-254) Deposited 2009-01-15 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer;Protein × 1 PDB declaration: monomeric |
Chain X
1938–1965(28 aa)
Fragment:UNP residues 1938-1965
|
Not recorded | No recorded non-water small molecule |
SOLUTION NMR
NMR measurement conditions
pH 6;298 K;Ionic strength (raw mmCIF value) none;Pressure ambient
NMR sample composition
2mM protein-1, 50% v/v Trifluoro Ethanol D2OH; 50% v/v H2O | 50% v/v Trifluoro Ethanol D2OH; 50% v/v H2O
|
Resolution not provided |
| 2N1P Structure of the C-terminal membrane domain of HCV NS5B protein Deposited 2015-04-15 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer;Protein × 1 PDB declaration: monomeric |
Chain A
2982–3011(30 aa)
Fragment:C-terminal domain (UNP residues 2982-3011)
|
Mutation:C14S | No recorded non-water small molecule |
SOLUTION NMR
NMR measurement conditions
298 K;Pressure ambient
NMR sample composition
1.4 mM protein, 1 M [U-2H] SDS, 95% H2O/5% D2O | 95% H2O/5% D2O
|
Resolution not provided |
| 2O8M Crystal structure of the S139A mutant of Hepatitis C Virus NS3/4A protease Deposited 2006-12-12 | Different construct Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer;Protein × 4 PDB declaration: tetrameric |
Chain C
1677–1695(19 aa)
Chain D
1677–1695(19 aa)
|
Not recorded | ZN ZINC ION × 2 NA SODIUM ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;277 K;1.25 to 1.5M NaCl, 0.1 M MES, .1M Na/K PO4, 5mM beta-mercaptoethanol, pH 5.6-6.2, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 2.00 Å R-free 0.228 |
| 2OBQ Discovery of the HCV NS3/4A Protease Inhibitor SCH503034. Key Steps in Structure-Based Optimization Deposited 2006-12-19 | Different construct Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer;Protein × 4 PDB declaration: tetrameric |
Chain B
1677–1695(19 aa)
Chain D
1677–1695(19 aa)
|
Mutation:C22S Mutation:C22S | ZN ZINC ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;277 K;The protein (NS3 complexed with KK-NS4a(21-39)-KK peptide) was at 12-15 mg/ml in 15 mM MES, pH 6.5 1 M NaCl 20 mM b-mercaptoethanol. Hanging Drops were formed by mixing 4:l protein solution with 4:l {0.75-1.0 M NaCl, 0.1M Na/K phosphate 0.1 M Mes, pH 5.8-6.1 20 mM b-mercaptoethanol}
The drop was equilibrated the drops over 1 ml {(1.25-1.50 M) NaCl - 0.1M Na/K phosphate 0.1 M Mes, pH 5.6-5.8, 20 mM b-mercaptoethanol}
, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 2.50 Å R-free 0.264 |
| 2XI2 HCV-H77 NS5B Apo Polymerase Deposited 2010-06-25 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer;Protein × 1 PDB declaration: monomeric |
Chain A
2421–2990(570 aa)
Fragment:CATALYTIC DOMAIN, RESIDUES 2421-2990
|
Mutation:YES | SO4 SULFATE ION × 7 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6.5;MES 0.1M PH 6.5, AMMONIUM SULFATE 0.2M, PEG 5000 MONOMETHYL ETHER
|
Resolution 1.80 Å R-free 0.207 |
| 2XI2 HCV-H77 NS5B Apo Polymerase Deposited 2010-06-25 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer;Protein × 1 PDB declaration: monomeric |
Chain B
2421–2990(570 aa)
Fragment:CATALYTIC DOMAIN, RESIDUES 2421-2990
|
Mutation:YES | SO4 SULFATE ION × 7 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6.5;MES 0.1M PH 6.5, AMMONIUM SULFATE 0.2M, PEG 5000 MONOMETHYL ETHER
|
Resolution 1.80 Å R-free 0.207 |
| 2XI2 HCV-H77 NS5B Apo Polymerase Deposited 2010-06-25 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 3 Protein monomer Monomer;Protein × 1 PDB declaration: monomeric |
Chain C
2421–2990(570 aa)
Fragment:CATALYTIC DOMAIN, RESIDUES 2421-2990
|
Mutation:YES | SO4 SULFATE ION × 6 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6.5;MES 0.1M PH 6.5, AMMONIUM SULFATE 0.2M, PEG 5000 MONOMETHYL ETHER
|
Resolution 1.80 Å R-free 0.207 |
| 2XI3 HCV-H77 NS5B Polymerase Complexed With GTP Deposited 2010-06-25 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer;Protein × 1 PDB declaration: monomeric |
Chain A
2421–2990(570 aa)
Fragment:CATALYTIC DOMAIN, RESIDUES 2421-2990
|
Mutation:YES | GTP GUANOSINE-5'-TRIPHOSPHATE × 3 MG MAGNESIUM ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6.5;MES 50MM PH 6.5, AMMONIUM SULFATE 0.2M, AMMONIUM ACETATE 0.25M, PEG 1000 25%-30%
|
Resolution 1.70 Å R-free 0.198 |
| 2XI3 HCV-H77 NS5B Polymerase Complexed With GTP Deposited 2010-06-25 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer;Protein × 1 PDB declaration: monomeric |
Chain B
2421–2990(570 aa)
Fragment:CATALYTIC DOMAIN, RESIDUES 2421-2990
|
Mutation:YES | GTP GUANOSINE-5'-TRIPHOSPHATE × 2 MG MAGNESIUM ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6.5;MES 50MM PH 6.5, AMMONIUM SULFATE 0.2M, AMMONIUM ACETATE 0.25M, PEG 1000 25%-30%
|
Resolution 1.70 Å R-free 0.198 |
| 4JZN Three dimensional structure of broadly neutralizing human anti - Hepatitis C virus (HCV) glycoprotein E2 Fab fragment HC84-1 Deposited 2013-04-03 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 3 Protein heterocomplex Heteromer;Protein × 3 PDB declaration: trimeric |
Chain K
434–446(13 aa)
Fragment:Residues 434-446 of HCV strain H77 polyprotein
|
Not recorded | SO4 SULFATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8;293 K;100mM TRIS pH 8.0
19% PEG4000
170mM Lithium Sulfate
15% Glycerol, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 2.05 Å R-free 0.235 |
| 4JZO Three dimensional structure of broadly neutralizing human anti - Hepatitis C virus (HCV) glycoprotein E2 Fab fragment HC84-27 Deposited 2013-04-03 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer;Protein × 3 PDB declaration: trimeric |
Chain J
434–446(13 aa)
Fragment:Residues 434-446 of HCV strain H77 polyprotein
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8;293 K;23% PEG 3350
250mM Sodium Thiocyanate, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 2.22 Å R-free 0.236 |
| 4JZO Three dimensional structure of broadly neutralizing human anti - Hepatitis C virus (HCV) glycoprotein E2 Fab fragment HC84-27 Deposited 2013-04-03 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer;Protein × 3 PDB declaration: trimeric |
Chain K
434–446(13 aa)
Fragment:Residues 434-446 of HCV strain H77 polyprotein
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8;293 K;23% PEG 3350
250mM Sodium Thiocyanate, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 2.22 Å R-free 0.236 |
| 4JZO Three dimensional structure of broadly neutralizing human anti - Hepatitis C virus (HCV) glycoprotein E2 Fab fragment HC84-27 Deposited 2013-04-03 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 3 Protein heterocomplex Heteromer;Protein × 3 PDB declaration: trimeric |
Chain I
434–446(13 aa)
Fragment:Residues 434-446 of HCV strain H77 polyprotein
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8;293 K;23% PEG 3350
250mM Sodium Thiocyanate, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 2.22 Å R-free 0.236 |
| 4JZO Three dimensional structure of broadly neutralizing human anti - Hepatitis C virus (HCV) glycoprotein E2 Fab fragment HC84-27 Deposited 2013-04-03 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 4 Protein heterocomplex Heteromer;Protein × 3 PDB declaration: trimeric |
Chain L
434–446(13 aa)
Fragment:Residues 434-446 of HCV strain H77 polyprotein
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8;293 K;23% PEG 3350
250mM Sodium Thiocyanate, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 2.22 Å R-free 0.236 |
| 4MWF Structure of Hepatitis C Virus Envelope Glycoprotein E2 core bound to broadly neutralizing antibody AR3C Deposited 2013-09-24 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Other combination Heteromer;Protein × 3 PDB declaration: trimeric |
Chain D
412–459(48 aa)
Chain D
486–645(160 aa)
|
Mutation:N448D, N576D Mutation:N448D, N576D | NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.5;293 K;20% (w/v) PEG 4000, 10% (v/v) isopropanol, and 0.1 M HEPES pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 2.65 Å R-free 0.270 |
| 4MWF Structure of Hepatitis C Virus Envelope Glycoprotein E2 core bound to broadly neutralizing antibody AR3C Deposited 2013-09-24 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Other combination Heteromer;Protein × 3 PDB declaration: trimeric |
Chain C
412–459(48 aa)
Chain C
486–645(160 aa)
|
Mutation:N448D, N576D Mutation:N448D, N576D | NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.5;293 K;20% (w/v) PEG 4000, 10% (v/v) isopropanol, and 0.1 M HEPES pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
|
Resolution 2.65 Å R-free 0.270 |
| 4Q0X Crystal structure of non-neutralizing antibody in complex with Epitope II of HCV E2 Deposited 2014-04-02 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer;Protein × 3 PDB declaration: trimeric |
Chain E
421–446(26 aa)
Fragment:epitope II (UNP residues 421-446)
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7;293 K;0.1 M imidazole, 14% w/v PEG550 MME, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 2.90 Å R-free 0.285 |
| 5FGB Three dimensional structure of broadly neutralizing human anti - Hepatitis C virus (HCV) glycoprotein E2 Fab fragment HC33.4 Deposited 2015-12-20 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer;Protein × 3 PDB declaration: trimeric |
Chain F
405–425(21 aa)
|
Not recorded | GOL GLYCEROL × 2 SO4 SULFATE ION × 5 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5.2;293 K;100 mM sodium citrate pH 5.2
300 mM ammonium sulfate
100 mM potassium phosphate
1 M lithium chloride
|
Resolution 1.65 Å R-free 0.190 |
| 5FGB Three dimensional structure of broadly neutralizing human anti - Hepatitis C virus (HCV) glycoprotein E2 Fab fragment HC33.4 Deposited 2015-12-20 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer;Protein × 3 PDB declaration: trimeric |
Chain G
405–425(21 aa)
|
Not recorded | GOL GLYCEROL × 2 SO4 SULFATE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5.2;293 K;100 mM sodium citrate pH 5.2
300 mM ammonium sulfate
100 mM potassium phosphate
1 M lithium chloride
|
Resolution 1.65 Å R-free 0.190 |
| 5FGC Three dimensional structure of broadly neutralizing human anti - Hepatitis C virus (HCV) glycoprotein E2 Fab fragment HC33.8 Deposited 2015-12-20 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer;Protein × 3 PDB declaration: trimeric |
Chain A
405–425(21 aa)
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 8.5;293 K;32% PEG 4000
100 mM Tris-HCl pH 8.5
800 mM lithium chloride
Crystals obtained using heterologous microseeding.
|
Resolution 1.90 Å R-free 0.236 |
26 other PDB entries and 41 assemblies. Open the comparison page and filter oligomeric states
View Construct and Data Evidence
| UniProt name | POLG_HCVH |
| Isoform | — |
| PDB entities | 1 |
| Chains and sequence ranges | Author chain A; PDBConstruct 11–190; UniProt 1026–1205 Author chain B; PDBConstruct 11–190; UniProt 1026–1205 |