1nqt

Crystal structure of bovine Glutamate dehydrogenase-ADP complex

Method: X-RAY DIFFRACTION

1. 蛋白身份与相关结构 Protein Identity & Related Structures

Glutamate dehydrogenase 1

物种未注明

UniProt P00366

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白同源多聚体 同源多聚体 蛋白 6 ADENOSINE-5'-DIPHOSPHATE × 6 与蛋白数一致
2 蛋白同源多聚体 同源多聚体 蛋白 6 ADENOSINE-5'-DIPHOSPHATE × 6 与蛋白数一致
3 蛋白同源多聚体 同源多聚体 蛋白 12 ADENOSINE-5'-DIPHOSPHATE × 12 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 DHE3_BOVIN
Isoform
PDB实体 1
链与序列区间 作者链 A; PDB构建体 1–496; UniProt 63–558 作者链 B; PDB构建体 1–496; UniProt 63–558 作者链 C; PDB构建体 1–496; UniProt 63–558 作者链 D; PDB构建体 1–496; UniProt 63–558 作者链 E; PDB构建体 1–496; UniProt 63–558 作者链 F; PDB构建体 1–496; UniProt 63–558 作者链 G; PDB构建体 1–496; UniProt 63–558 作者链 H; PDB构建体 1–496; UniProt 63–558 作者链 I; PDB构建体 1–496; UniProt 63–558 作者链 J; PDB构建体 1–496; UniProt 63–558 作者链 K; PDB构建体 1–496; UniProt 63–558 作者链 L; PDB构建体 1–496; UniProt 63–558

页面优先展示蛋白身份、当前 assembly、共同组分、聚集状态和跨 PDB 结构链接。 链映射与序列区间收在“数据证据”中;数据库内部编号、导入时间和 assembly 操作表达式仅用于维护,因此不在读者页面展示。

2. 结构基本信息 2. Structure Basics

条目编号 entry_id1nqt
沉积日期 deposition_date2003-01-23
结构标题 titleCrystal structure of bovine Glutamate dehydrogenase-ADP complex
关键词 keywordsglutamate dehydrogenase-ADP complex, dimer of two hexamers, regulation, OXIDOREDUCTASE; OXIDOREDUCTASE
实验方法 methodX-RAY DIFFRACTION

3. Official assembly/model 理论 SAXS Official SAXS Profiles

页面只读取最新 assembly 计算结果。每一条曲线都对应明确的 PDB、official biological assembly 和 coordinate model。

1nqt__assembly_3__model_1

Assembly 3 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

下载该曲线 .dat

1nqt__assembly_3__model_1 | I(q)

10-2 10-1 106 107 108 109 q (1/Angstrom) I(q)
100 个绘图点;横轴和纵轴均采用对数尺度。

1nqt__assembly_3__model_1 | P(r) · Pending

新版 assembly/model P(r) 尚未计算 此处仅保留位置,不展示旧数据 r (Angstrom) P(r)
P(r) 将按相同 assembly/model 分别计算和展示。
Rg(Guinier)69.69 Å
Rg(电子密度)70.27 Å
总 Rg70.22 Å
原子数46812
残基数5952
排除体积830040 ų
最大 q0.500 Å⁻¹
Assembly Model 结构单元 聚集说明 状态 CRYSOL 操作
1 1 1nqt__assembly_1__model_1 hexameric (6) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载
2 1 1nqt__assembly_2__model_1 hexameric (6) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载
3 1 1nqt__assembly_3__model_1 dodecameric (12) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载

4. 晶体学与实验 4. Crystallography & Experiment

5. 实体与聚合物信息 Entities & Polymers (2)

6. 折叠分类 (SCOP + CATH) 60 domains

SCOP 2.08 (24 domains)

结构域编号 domain_idd1nqta1
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.2 — NAD(P)-binding Rossmann-fold domains
超家族 Superfamily superfamilyc.2.1 — NAD(P)-binding Rossmann-fold domains
家族 Family familyc.2.1.7 — Aminoacid dehydrogenase-like, C-terminal domain
结构域编号 domain_idd1nqta2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.58 — Aminoacid dehydrogenase-like, N-terminal domain
超家族 Superfamily superfamilyc.58.1 — Aminoacid dehydrogenase-like, N-terminal domain
家族 Family familyc.58.1.1 — Aminoacid dehydrogenases
结构域编号 domain_idd1nqtb1
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.2 — NAD(P)-binding Rossmann-fold domains
超家族 Superfamily superfamilyc.2.1 — NAD(P)-binding Rossmann-fold domains
家族 Family familyc.2.1.7 — Aminoacid dehydrogenase-like, C-terminal domain
结构域编号 domain_idd1nqtb2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.58 — Aminoacid dehydrogenase-like, N-terminal domain
超家族 Superfamily superfamilyc.58.1 — Aminoacid dehydrogenase-like, N-terminal domain
家族 Family familyc.58.1.1 — Aminoacid dehydrogenases
结构域编号 domain_idd1nqtc1
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.2 — NAD(P)-binding Rossmann-fold domains
超家族 Superfamily superfamilyc.2.1 — NAD(P)-binding Rossmann-fold domains
家族 Family familyc.2.1.7 — Aminoacid dehydrogenase-like, C-terminal domain
结构域编号 domain_idd1nqtc2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.58 — Aminoacid dehydrogenase-like, N-terminal domain
超家族 Superfamily superfamilyc.58.1 — Aminoacid dehydrogenase-like, N-terminal domain
家族 Family familyc.58.1.1 — Aminoacid dehydrogenases
结构域编号 domain_idd1nqtd1
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.2 — NAD(P)-binding Rossmann-fold domains
超家族 Superfamily superfamilyc.2.1 — NAD(P)-binding Rossmann-fold domains
家族 Family familyc.2.1.7 — Aminoacid dehydrogenase-like, C-terminal domain
结构域编号 domain_idd1nqtd2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.58 — Aminoacid dehydrogenase-like, N-terminal domain
超家族 Superfamily superfamilyc.58.1 — Aminoacid dehydrogenase-like, N-terminal domain
家族 Family familyc.58.1.1 — Aminoacid dehydrogenases
结构域编号 domain_idd1nqte1
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.2 — NAD(P)-binding Rossmann-fold domains
超家族 Superfamily superfamilyc.2.1 — NAD(P)-binding Rossmann-fold domains
家族 Family familyc.2.1.7 — Aminoacid dehydrogenase-like, C-terminal domain
结构域编号 domain_idd1nqte2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.58 — Aminoacid dehydrogenase-like, N-terminal domain
超家族 Superfamily superfamilyc.58.1 — Aminoacid dehydrogenase-like, N-terminal domain
家族 Family familyc.58.1.1 — Aminoacid dehydrogenases
结构域编号 domain_idd1nqtf1
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.2 — NAD(P)-binding Rossmann-fold domains
超家族 Superfamily superfamilyc.2.1 — NAD(P)-binding Rossmann-fold domains
家族 Family familyc.2.1.7 — Aminoacid dehydrogenase-like, C-terminal domain
结构域编号 domain_idd1nqtf2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.58 — Aminoacid dehydrogenase-like, N-terminal domain
超家族 Superfamily superfamilyc.58.1 — Aminoacid dehydrogenase-like, N-terminal domain
家族 Family familyc.58.1.1 — Aminoacid dehydrogenases
结构域编号 domain_idd1nqtg1
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.2 — NAD(P)-binding Rossmann-fold domains
超家族 Superfamily superfamilyc.2.1 — NAD(P)-binding Rossmann-fold domains
家族 Family familyc.2.1.7 — Aminoacid dehydrogenase-like, C-terminal domain
结构域编号 domain_idd1nqtg2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.58 — Aminoacid dehydrogenase-like, N-terminal domain
超家族 Superfamily superfamilyc.58.1 — Aminoacid dehydrogenase-like, N-terminal domain
家族 Family familyc.58.1.1 — Aminoacid dehydrogenases
结构域编号 domain_idd1nqth1
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.2 — NAD(P)-binding Rossmann-fold domains
超家族 Superfamily superfamilyc.2.1 — NAD(P)-binding Rossmann-fold domains
家族 Family familyc.2.1.7 — Aminoacid dehydrogenase-like, C-terminal domain
结构域编号 domain_idd1nqth2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.58 — Aminoacid dehydrogenase-like, N-terminal domain
超家族 Superfamily superfamilyc.58.1 — Aminoacid dehydrogenase-like, N-terminal domain
家族 Family familyc.58.1.1 — Aminoacid dehydrogenases
结构域编号 domain_idd1nqti1
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.2 — NAD(P)-binding Rossmann-fold domains
超家族 Superfamily superfamilyc.2.1 — NAD(P)-binding Rossmann-fold domains
家族 Family familyc.2.1.7 — Aminoacid dehydrogenase-like, C-terminal domain
结构域编号 domain_idd1nqti2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.58 — Aminoacid dehydrogenase-like, N-terminal domain
超家族 Superfamily superfamilyc.58.1 — Aminoacid dehydrogenase-like, N-terminal domain
家族 Family familyc.58.1.1 — Aminoacid dehydrogenases
结构域编号 domain_idd1nqtj1
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.2 — NAD(P)-binding Rossmann-fold domains
超家族 Superfamily superfamilyc.2.1 — NAD(P)-binding Rossmann-fold domains
家族 Family familyc.2.1.7 — Aminoacid dehydrogenase-like, C-terminal domain
结构域编号 domain_idd1nqtj2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.58 — Aminoacid dehydrogenase-like, N-terminal domain
超家族 Superfamily superfamilyc.58.1 — Aminoacid dehydrogenase-like, N-terminal domain
家族 Family familyc.58.1.1 — Aminoacid dehydrogenases
结构域编号 domain_idd1nqtk1
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.2 — NAD(P)-binding Rossmann-fold domains
超家族 Superfamily superfamilyc.2.1 — NAD(P)-binding Rossmann-fold domains
家族 Family familyc.2.1.7 — Aminoacid dehydrogenase-like, C-terminal domain
结构域编号 domain_idd1nqtk2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.58 — Aminoacid dehydrogenase-like, N-terminal domain
超家族 Superfamily superfamilyc.58.1 — Aminoacid dehydrogenase-like, N-terminal domain
家族 Family familyc.58.1.1 — Aminoacid dehydrogenases
结构域编号 domain_idd1nqtl1
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.2 — NAD(P)-binding Rossmann-fold domains
超家族 Superfamily superfamilyc.2.1 — NAD(P)-binding Rossmann-fold domains
家族 Family familyc.2.1.7 — Aminoacid dehydrogenase-like, C-terminal domain
结构域编号 domain_idd1nqtl2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.58 — Aminoacid dehydrogenase-like, N-terminal domain
超家族 Superfamily superfamilyc.58.1 — Aminoacid dehydrogenase-like, N-terminal domain
家族 Family familyc.58.1.1 — Aminoacid dehydrogenases

CATH v4.4 (36 domains)

结构域编号 domain_id1nqtA01
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily10860 — Leucine Dehydrogenase, chain A, domain 1
结构域编号 domain_id1nqtA02
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily720 — NAD(P)-binding Rossmann-like Domain
结构域编号 domain_id1nqtA03
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology287 — Helix Hairpins
同源超家族 H-superfamily homologous superfamily140
结构域编号 domain_id1nqtB01
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily10860 — Leucine Dehydrogenase, chain A, domain 1
结构域编号 domain_id1nqtB02
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily720 — NAD(P)-binding Rossmann-like Domain
结构域编号 domain_id1nqtB03
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology287 — Helix Hairpins
同源超家族 H-superfamily homologous superfamily140
结构域编号 domain_id1nqtC01
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily10860 — Leucine Dehydrogenase, chain A, domain 1
结构域编号 domain_id1nqtC02
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily720 — NAD(P)-binding Rossmann-like Domain
结构域编号 domain_id1nqtC03
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology287 — Helix Hairpins
同源超家族 H-superfamily homologous superfamily140
结构域编号 domain_id1nqtD01
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily10860 — Leucine Dehydrogenase, chain A, domain 1
结构域编号 domain_id1nqtD02
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily720 — NAD(P)-binding Rossmann-like Domain
结构域编号 domain_id1nqtD03
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology287 — Helix Hairpins
同源超家族 H-superfamily homologous superfamily140
结构域编号 domain_id1nqtE01
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily10860 — Leucine Dehydrogenase, chain A, domain 1
结构域编号 domain_id1nqtE02
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily720 — NAD(P)-binding Rossmann-like Domain
结构域编号 domain_id1nqtE03
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology287 — Helix Hairpins
同源超家族 H-superfamily homologous superfamily140
结构域编号 domain_id1nqtF01
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily10860 — Leucine Dehydrogenase, chain A, domain 1
结构域编号 domain_id1nqtF02
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily720 — NAD(P)-binding Rossmann-like Domain
结构域编号 domain_id1nqtF03
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology287 — Helix Hairpins
同源超家族 H-superfamily homologous superfamily140
结构域编号 domain_id1nqtG01
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily10860 — Leucine Dehydrogenase, chain A, domain 1
结构域编号 domain_id1nqtG02
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily720 — NAD(P)-binding Rossmann-like Domain
结构域编号 domain_id1nqtG03
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology287 — Helix Hairpins
同源超家族 H-superfamily homologous superfamily140
结构域编号 domain_id1nqtH01
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily10860 — Leucine Dehydrogenase, chain A, domain 1
结构域编号 domain_id1nqtH02
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily720 — NAD(P)-binding Rossmann-like Domain
结构域编号 domain_id1nqtH03
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology287 — Helix Hairpins
同源超家族 H-superfamily homologous superfamily140
结构域编号 domain_id1nqtI01
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily10860 — Leucine Dehydrogenase, chain A, domain 1
结构域编号 domain_id1nqtI02
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily720 — NAD(P)-binding Rossmann-like Domain
结构域编号 domain_id1nqtI03
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology287 — Helix Hairpins
同源超家族 H-superfamily homologous superfamily140
结构域编号 domain_id1nqtJ01
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily10860 — Leucine Dehydrogenase, chain A, domain 1
结构域编号 domain_id1nqtJ02
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily720 — NAD(P)-binding Rossmann-like Domain
结构域编号 domain_id1nqtJ03
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology287 — Helix Hairpins
同源超家族 H-superfamily homologous superfamily140
结构域编号 domain_id1nqtK01
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily10860 — Leucine Dehydrogenase, chain A, domain 1
结构域编号 domain_id1nqtK02
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily720 — NAD(P)-binding Rossmann-like Domain
结构域编号 domain_id1nqtK03
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology287 — Helix Hairpins
同源超家族 H-superfamily homologous superfamily140
结构域编号 domain_id1nqtL01
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily10860 — Leucine Dehydrogenase, chain A, domain 1
结构域编号 domain_id1nqtL02
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology50 — Rossmann fold
同源超家族 H-superfamily homologous superfamily720 — NAD(P)-binding Rossmann-like Domain
结构域编号 domain_id1nqtL03
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology287 — Helix Hairpins
同源超家族 H-superfamily homologous superfamily140

7. 引用文献 (1)