1q3y

NMR structure of the Cys28His mutant (D form) of the nucleocapsid protein NCp7 of HIV-1.

Method: SOLUTION NMR
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1. Protein Identity and Related Structures Protein Identity & Related Structures

GAG protein

OrganismNot specified

UniProt Q9PY17

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein monomer Monomer Protein 1 ZINC ION × 2 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name Q9PY17_9HIV1
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–42; UniProt 390–431

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id1q3y
Deposition date deposition_date2003-08-01
Structure title titleNMR structure of the Cys28His mutant (D form) of the nucleocapsid protein NCp7 of HIV-1.
Keywords keywordsCCHC zinc knuckle, CCHH zinc knuckle, Viral protein; VIRAL PROTEIN
Experimental Method methodSOLUTION NMR
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

1q3y__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

1q3y__assembly_1__model_1 | I(q)

10-2 10-1 104 105 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

1q3y__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)14.59 Å
Rg (electron density)14.38 Å
Total Rg15.08 Å
Atom count646
Residues41
Excluded volume5745 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 1q3y__assembly_1__model_1 monomeric (1) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (2)

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6. Fold Classification (SCOP + CATH) 2 domains

SCOP 2.08 (1 domains)

Domain ID domain_idd1q3ya_
Class classg — Small proteins
Fold Fold foldg.40 — Retrovirus zinc finger-like domains
Superfamily Superfamily superfamilyg.40.1 — Retrovirus zinc finger-like domains
Family Family familyg.40.1.1 — Retrovirus zinc finger-like domains

CATH v4.4 (1 domains)

Domain ID domain_id1q3yA00
Class class4 — Few Secondary Structures
Architecture architecture10 — Irregular
Topology topology60 — HIV-1 Nucleocapsid Protein
Homologous superfamily homologous superfamily10 — Zinc finger, CCHC-type
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7. Citations (2)