1qiu
A triple beta-spiral in the adenovirus fibre shaft reveals a new structural motif for biological fibres
SAXS 散射曲线 SAXS Profile
P(r) 距离分布 P(r) Distribution
1. 结构基本信息 1. Structure Basics
| 条目编号 entry_id | 1qiu |
| 沉积日期 deposition_date | 1999-06-16 |
| 结构标题 title | A triple beta-spiral in the adenovirus fibre shaft reveals a new structural motif for biological fibres |
| 关键词 keywords | FIBRE PROTEIN, TRIPLE BETA-SPIRAL, ADENOVIRUS; FIBRE PROTEIN |
| 实验方法 method | X-RAY DIFFRACTION |
2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)
| 回转半径 Rg (Guinier) rg_guinier | 47.78 Å |
| 回转半径 Rg (电子) rg_electron | 48.22 Å |
| 零角强度 I(0) i0 | 447641000.00 |
| 分子量 molecular_weight | 171370.0 kDa |
| 排除体积 excluded_volume | 212830 ų |
| 包络体积 envelope_volume | 286360 ų |
| 水化壳体积 shell_volume | 52039 ų |
| 包络直径 envelope_diameter | 160.3 Å |
| 壳层 Rg shell_rg | 48.22 Å |
| 包络 Rg envelope_rg | 47.23 Å |
| 形状 Rg shape_rg | 48.21 Å |
| 总 Rg total_rg | 48.24 Å |
| 总原子数 total_atoms | 12042 |
| 残基数 n_residues | 1584 |
| 球谐函数阶数 n_harmonics | 20 |
| q 范围 q_range | — – 0.5000 Å−1 |
| 数据点数 n_points | 101 |
| 壳层类型 shell_type | directional |
| 溶剂电子密度 solvent_density | 0.3340 e/ų |
| 壳层衬度 contrast_shell | 0.0300 e/ų |
| CRYSOL 版本 crysol_version | 4.1.3 |
3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)
| 最大尺寸 Dmax dmax | 162.4 Å |
| Rg (实空间) rg_real | 48.35 Å |
| Rg 误差 (实空间) rg_real_error | 1.57 Å |
| I(0) (实空间) i0_real | 4.4760e+08 |
| I(0) 误差 (实空间) i0_real_error | 9.4450e+06 |
| Rg (倒空间) rg_reciprocal | 47.78 Å |
| I(0) (倒空间) i0_reciprocal | 447300000.0000 |
| 解质量估计 total_estimate | 0.7788 |
| 解质量评级 solution_quality | GOOD a GOOD solution |
| P(r) 峰数 n_peaks | 2 |
| 主峰位置 r_peak_primary | 39.4 Å |
| 偏度 Skewness skewness | 0.457 |
| 峰度 Kurtosis kurtosis | -0.723 |
| 角度范围 angular_range | — – 0.1650 Å−1 |
| 当前正则化参数 α current_alpha | 0.0000 |
| 最高正则化参数 α highest_alpha | 77990000.0000 |
| 实空间数据点数 n_real_points | 34 |
| GNOM 版本 gnom_version | 4.1.3 |
| 质量判据 quality_criteria | AN1: 0.000; Oscil: 0.604; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.718; Smooth: 0.591 |
4. 晶体学与实验 4. Crystallography & Experiment
5. 实体与聚合体信息 (2)
6. 折叠分类 (SCOP + CATH) 24 domains
SCOP 2.08 (12 domains)
| 结构域编号 domain_id | d1qiua1 |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.21 — Virus attachment protein globular domain |
| 超家族 Superfamily superfamily | b.21.1 — Virus attachment protein globular domain |
| 家族 Family family | b.21.1.1 — Adenovirus fiber protein 'knob' domain |
| 结构域编号 domain_id | d1qiua2 |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.83 — Triple beta-spiral |
| 超家族 Superfamily superfamily | b.83.1 — Fibre shaft of virus attachment proteins |
| 家族 Family family | b.83.1.1 — Adenovirus |
| 结构域编号 domain_id | d1qiub1 |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.21 — Virus attachment protein globular domain |
| 超家族 Superfamily superfamily | b.21.1 — Virus attachment protein globular domain |
| 家族 Family family | b.21.1.1 — Adenovirus fiber protein 'knob' domain |
| 结构域编号 domain_id | d1qiub2 |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.83 — Triple beta-spiral |
| 超家族 Superfamily superfamily | b.83.1 — Fibre shaft of virus attachment proteins |
| 家族 Family family | b.83.1.1 — Adenovirus |
| 结构域编号 domain_id | d1qiuc1 |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.21 — Virus attachment protein globular domain |
| 超家族 Superfamily superfamily | b.21.1 — Virus attachment protein globular domain |
| 家族 Family family | b.21.1.1 — Adenovirus fiber protein 'knob' domain |
| 结构域编号 domain_id | d1qiuc2 |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.83 — Triple beta-spiral |
| 超家族 Superfamily superfamily | b.83.1 — Fibre shaft of virus attachment proteins |
| 家族 Family family | b.83.1.1 — Adenovirus |
| 结构域编号 domain_id | d1qiud1 |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.21 — Virus attachment protein globular domain |
| 超家族 Superfamily superfamily | b.21.1 — Virus attachment protein globular domain |
| 家族 Family family | b.21.1.1 — Adenovirus fiber protein 'knob' domain |
| 结构域编号 domain_id | d1qiud2 |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.83 — Triple beta-spiral |
| 超家族 Superfamily superfamily | b.83.1 — Fibre shaft of virus attachment proteins |
| 家族 Family family | b.83.1.1 — Adenovirus |
| 结构域编号 domain_id | d1qiue1 |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.21 — Virus attachment protein globular domain |
| 超家族 Superfamily superfamily | b.21.1 — Virus attachment protein globular domain |
| 家族 Family family | b.21.1.1 — Adenovirus fiber protein 'knob' domain |
| 结构域编号 domain_id | d1qiue2 |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.83 — Triple beta-spiral |
| 超家族 Superfamily superfamily | b.83.1 — Fibre shaft of virus attachment proteins |
| 家族 Family family | b.83.1.1 — Adenovirus |
| 结构域编号 domain_id | d1qiuf1 |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.21 — Virus attachment protein globular domain |
| 超家族 Superfamily superfamily | b.21.1 — Virus attachment protein globular domain |
| 家族 Family family | b.21.1.1 — Adenovirus fiber protein 'knob' domain |
| 结构域编号 domain_id | d1qiuf2 |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.83 — Triple beta-spiral |
| 超家族 Superfamily superfamily | b.83.1 — Fibre shaft of virus attachment proteins |
| 家族 Family family | b.83.1.1 — Adenovirus |
CATH v4.4 (12 domains)
| 结构域编号 domain_id | 1qiuA01 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 10 — Ribbon |
| 拓扑 Topology topology | 25 — Laminin |
| 同源超家族 H-superfamily homologous superfamily | 20 — reovirus attachment protein sigma1; domain 1 |
| 结构域编号 domain_id | 1qiuA02 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 90 — Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) |
| 同源超家族 H-superfamily homologous superfamily | 10 — Adenovirus pIV-related, attachment domain |
| 结构域编号 domain_id | 1qiuB01 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 10 — Ribbon |
| 拓扑 Topology topology | 25 — Laminin |
| 同源超家族 H-superfamily homologous superfamily | 20 — reovirus attachment protein sigma1; domain 1 |
| 结构域编号 domain_id | 1qiuB02 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 90 — Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) |
| 同源超家族 H-superfamily homologous superfamily | 10 — Adenovirus pIV-related, attachment domain |
| 结构域编号 domain_id | 1qiuC01 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 10 — Ribbon |
| 拓扑 Topology topology | 25 — Laminin |
| 同源超家族 H-superfamily homologous superfamily | 20 — reovirus attachment protein sigma1; domain 1 |
| 结构域编号 domain_id | 1qiuC02 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 90 — Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) |
| 同源超家族 H-superfamily homologous superfamily | 10 — Adenovirus pIV-related, attachment domain |
| 结构域编号 domain_id | 1qiuD01 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 10 — Ribbon |
| 拓扑 Topology topology | 25 — Laminin |
| 同源超家族 H-superfamily homologous superfamily | 20 — reovirus attachment protein sigma1; domain 1 |
| 结构域编号 domain_id | 1qiuD02 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 90 — Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) |
| 同源超家族 H-superfamily homologous superfamily | 10 — Adenovirus pIV-related, attachment domain |
| 结构域编号 domain_id | 1qiuE01 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 10 — Ribbon |
| 拓扑 Topology topology | 25 — Laminin |
| 同源超家族 H-superfamily homologous superfamily | 20 — reovirus attachment protein sigma1; domain 1 |
| 结构域编号 domain_id | 1qiuE02 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 90 — Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) |
| 同源超家族 H-superfamily homologous superfamily | 10 — Adenovirus pIV-related, attachment domain |
| 结构域编号 domain_id | 1qiuF01 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 10 — Ribbon |
| 拓扑 Topology topology | 25 — Laminin |
| 同源超家族 H-superfamily homologous superfamily | 20 — reovirus attachment protein sigma1; domain 1 |
| 结构域编号 domain_id | 1qiuF02 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 90 — Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) |
| 同源超家族 H-superfamily homologous superfamily | 10 — Adenovirus pIV-related, attachment domain |