1sw8

Solution structure of the N-terminal domain of Human N60D calmodulin refined with paramagnetism based strategy

Method: SOLUTION NMR Dmax: 38.9 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

Calmodulin

Homo sapiens

UniProt P62158

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein monomer Monomer Protein × 1 PDB declaration: monomeric(1) Consistent with protein copy count Chain A; UniProt 2–80 Fragment:N-terminal domain Mutation:N60D CA CALCIUM ION × 2 SOLUTION NMR NMR measurement conditions:pH 6.5;300 K;Ionic strength (raw mmCIF value) 400 mM KCl;Pressure ambient NMR sample composition:1 mM Calmodulin U-15N, 20 mM MES, 400 mM KCl, 90% H20, 10% D20 | 90%H20, 10% D20 NMR sample composition:1 mM Calmodulin U-15N-13C, 20 mM MES, 400 mM KCl, 90% H20, 10% D20 | 90%H20, 10% D20 Resolution not provided

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

105 other PDB entries and 176 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name CALM_HUMAN
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–79; UniProt 2–80

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 1sw8

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 1sw8
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2. Structure Basics 2. Structure Basics

Entry ID entry_id1sw8
Deposition date deposition_date2004-03-30
Structure title titleSolution structure of the N-terminal domain of Human N60D calmodulin refined with paramagnetism based strategy
Keywords keywordscalcium, calmodulin, EF-hand, lanthanide, Structural Proteomics in Europe, SPINE, Structural Genomics, Calcium-Binding Protein; Calcium-Binding Protein
Experimental Method methodSOLUTION NMR

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier12.73
Radius of gyration Rg (electron density) rg_electron12.22
Forward intensity I(0) i0477766000.00
Molecular weight molecular_weight176900.0 kDa
Excluded volume excluded_volume217470 ų
Envelope volume envelope_volume17777 ų
Hydration-shell volume shell_volume11364 ų
Envelope diameter envelope_diameter43.8
Shell Rg shell_rg18.95
Envelope Rg envelope_rg13.78
Shape Rg shape_rg12.23
Total Rg total_rg12.33
Total atoms total_atoms23920
Residues n_residues1580
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax38.9
Rg (real space) rg_real12.65
Rg uncertainty (real space) rg_real_error0.27
I(0) (real space) i0_real4.7780e+08
I(0) uncertainty (real space) i0_real_error4.3660e+06
Rg (reciprocal space) rg_reciprocal12.65
I(0) (reciprocal space) i0_reciprocal477800000.0000
Solution quality estimate total_estimate0.8133
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary18.2
Skewness Skewness skewness-0.013
Kurtosis Kurtosis kurtosis-0.369
Angular range angular_range— – 0.5000 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha47530.0000
Real-space data points n_real_points80
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.868; Stabil: 0.991; Sysdev: 1.000; Positv: 1.000; Valcen: 0.994; Smooth: 0.000

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (2)

7. Fold Classification (SCOP + CATH) 2 domains

SCOP 2.08 (1 domains)

Domain ID domain_idd1sw8a_
Class classa — All alpha proteins
Fold Fold folda.39 — EF Hand-like
Superfamily Superfamily superfamilya.39.1 — EF-hand
Family Family familya.39.1.5 — Calmodulin-like

CATH v4.4 (1 domains)

Domain ID domain_id1sw8A00
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology238 — Recoverin; domain 1
Homologous superfamily homologous superfamily10 — EF-hand

8. Citations (1)

9. Files and Curves (10)