SAXSdb — 1vps

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1. Protein Identity and Related Structures Protein Identity & Related Structures

POLYOMAVIRUS VP1 PENTAMER

Murine polyomavirus

State in the Current Structure

Assembly	Oligomeric State	Construct	Mutations and Modifications	Ligands, Ions and Associated Components	Method and Experimental Conditions	Structure Quality
1	Other combination Homooligomer Protein × 5 其他Polymer 5 PDB declaration: pentameric（5） Consistent with protein copy count	Chain A； UniProt 32–320 Chain B； UniProt 32–320 Chain C； UniProt 32–320 Chain D； UniProt 32–320 Chain E； UniProt 32–320	Not recorded	;N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-3)-[N-acetyl-alpha-neuraminic acid-(2-6)]2-acetamido-2-deoxy-beta-D-glucopyranose ; × 5	X-RAY DIFFRACTION X-ray crystallization conditions：pH 8；DROP: 1.0 M AMMONIUM PHOSPHATE PH 8.0 2.5 & ETHANOL 8-10 MG/ML PROTEIN RESERVOIR: 2.0 M AMMONIUM PHOSPHATE PH 8.0 5 % ETHANOL	Resolution 1.90 Å R-free 0.205
2	Other combination Homooligomer Protein × 10 其他Polymer 10 PDB declaration: decameric（10） Consistent with protein copy count	Chain A； UniProt 32–320 Chain B； UniProt 32–320 Chain C； UniProt 32–320 Chain D； UniProt 32–320 Chain E； UniProt 32–320	Not recorded	;N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-3)-[N-acetyl-alpha-neuraminic acid-(2-6)]2-acetamido-2-deoxy-beta-D-glucopyranose ; × 10	X-RAY DIFFRACTION X-ray crystallization conditions：pH 8；DROP: 1.0 M AMMONIUM PHOSPHATE PH 8.0 2.5 & ETHANOL 8-10 MG/ML PROTEIN RESERVOIR: 2.0 M AMMONIUM PHOSPHATE PH 8.0 5 % ETHANOL	Resolution 1.90 Å R-free 0.205

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB	Difference from Current Entry 1VPS	Assembly / Oligomeric State	Construct	Mutations and Modifications	Ligands, Ions and Non-polymers	Method and Experimental Conditions	Structure Quality
1CN3 INTERACTION OF POLYOMAVIRUS INTERNAL PROTEIN VP2 WITH MAJOR CAPSID PROTEIN VP1 AND IMPLICATIONS FOR PARTICIPATION OF VP2 IN VIRAL ENTRY Deposited 1999-05-24	Different construct Different oligomeric state Different experimental conditions Different structure-quality metrics	Assembly 1 Protein heterocomplex Heteromer；Protein × 6 PDB declaration: hexameric	Chain A 34–316（283 aa） Fragment：RESIDUES 35-317 Chain B 34–316（283 aa） Fragment：RESIDUES 35-317 Chain C 34–316（283 aa） Fragment：RESIDUES 35-317 Chain D 34–316（283 aa） Fragment：RESIDUES 35-317 Chain E 34–316（283 aa） Fragment：RESIDUES 35-317	Not recorded	No recorded non-water small molecule	X-RAY DIFFRACTION X-ray crystallization conditions pH 4；pH 4.0	Resolution 2.20 Å R-free 0.260
1CN3 INTERACTION OF POLYOMAVIRUS INTERNAL PROTEIN VP2 WITH MAJOR CAPSID PROTEIN VP1 AND IMPLICATIONS FOR PARTICIPATION OF VP2 IN VIRAL ENTRY Deposited 1999-05-24	Different construct Different oligomeric state Different experimental conditions Different structure-quality metrics	Assembly 2 Protein heterocomplex Heteromer；Protein × 12 PDB declaration: dodecameric	Chain A 34–316（283 aa） Fragment：RESIDUES 35-317 Chain B 34–316（283 aa） Fragment：RESIDUES 35-317 Chain C 34–316（283 aa） Fragment：RESIDUES 35-317 Chain D 34–316（283 aa） Fragment：RESIDUES 35-317 Chain E 34–316（283 aa） Fragment：RESIDUES 35-317	Not recorded	No recorded non-water small molecule	X-RAY DIFFRACTION X-ray crystallization conditions pH 4；pH 4.0	Resolution 2.20 Å R-free 0.260
1SID MURINE POLYOMAVIRUS COMPLEXED WITH 3'SIALYL LACTOSE Deposited 1995-12-12	Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics	Assembly 1 Other combination Homooligomer；Protein × 360 PDB declaration: 360-MERIC	Chain A 1–383（383 aa） Chain B 1–383（383 aa） Chain C 1–383（383 aa） Chain D 1–383（383 aa） Chain E 1–383（383 aa） Chain F 1–383（383 aa）	Not recorded	No recorded non-water small molecule	X-RAY DIFFRACTION mmCIF provides none of the parsed conditions	Resolution 3.65 Å R-free 0.253
1SID MURINE POLYOMAVIRUS COMPLEXED WITH 3'SIALYL LACTOSE Deposited 1995-12-12	Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics	Assembly 2 Other combination Homooligomer；Protein × 6 PDB declaration: hexameric	Chain A 1–383（383 aa） Chain B 1–383（383 aa） Chain C 1–383（383 aa） Chain D 1–383（383 aa） Chain E 1–383（383 aa） Chain F 1–383（383 aa）	Not recorded	No recorded non-water small molecule	X-RAY DIFFRACTION mmCIF provides none of the parsed conditions	Resolution 3.65 Å R-free 0.253
1SID MURINE POLYOMAVIRUS COMPLEXED WITH 3'SIALYL LACTOSE Deposited 1995-12-12	Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics	Assembly 3 Other combination Homooligomer；Protein × 30 PDB declaration: 30-meric	Chain A 1–383（383 aa） Chain B 1–383（383 aa） Chain C 1–383（383 aa） Chain D 1–383（383 aa） Chain E 1–383（383 aa） Chain F 1–383（383 aa）	Not recorded	No recorded non-water small molecule	X-RAY DIFFRACTION mmCIF provides none of the parsed conditions	Resolution 3.65 Å R-free 0.253
1SID MURINE POLYOMAVIRUS COMPLEXED WITH 3'SIALYL LACTOSE Deposited 1995-12-12	Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics	Assembly 4 Other combination Homooligomer；Protein × 36 PDB declaration: 36-meric	Chain A 1–383（383 aa） Chain B 1–383（383 aa） Chain C 1–383（383 aa） Chain D 1–383（383 aa） Chain E 1–383（383 aa） Chain F 1–383（383 aa）	Not recorded	No recorded non-water small molecule	X-RAY DIFFRACTION mmCIF provides none of the parsed conditions	Resolution 3.65 Å R-free 0.253
1SID MURINE POLYOMAVIRUS COMPLEXED WITH 3'SIALYL LACTOSE Deposited 1995-12-12	Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics	Assembly 5 Other combination Homooligomer；Protein × 6 PDB declaration: hexameric	Chain A 1–383（383 aa） Chain B 1–383（383 aa） Chain C 1–383（383 aa） Chain D 1–383（383 aa） Chain E 1–383（383 aa） Chain F 1–383（383 aa）	Not recorded	No recorded non-water small molecule	X-RAY DIFFRACTION mmCIF provides none of the parsed conditions	Resolution 3.65 Å R-free 0.253
1SID MURINE POLYOMAVIRUS COMPLEXED WITH 3'SIALYL LACTOSE Deposited 1995-12-12	Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics	Assembly 6 Other combination Homooligomer；Protein × 30 PDB declaration: 30-meric	Chain A 1–383（383 aa） Chain B 1–383（383 aa） Chain C 1–383（383 aa） Chain D 1–383（383 aa） Chain E 1–383（383 aa） Chain F 1–383（383 aa）	Not recorded	No recorded non-water small molecule	X-RAY DIFFRACTION mmCIF provides none of the parsed conditions	Resolution 3.65 Å R-free 0.253
1SIE MURINE POLYOMAVIRUS COMPLEXED WITH A DISIALYLATED OLIGOSACCHARIDE Deposited 1995-12-12	Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics	Assembly 1 Other combination Homooligomer；Protein × 360 PDB declaration: 360-MERIC	Chain A 1–383（383 aa） Chain B 1–383（383 aa） Chain C 1–383（383 aa） Chain D 1–383（383 aa） Chain E 1–383（383 aa） Chain F 1–383（383 aa）	Not recorded	No recorded non-water small molecule	X-RAY DIFFRACTION mmCIF provides none of the parsed conditions	Resolution 3.65 Å R-free 0.264
1SIE MURINE POLYOMAVIRUS COMPLEXED WITH A DISIALYLATED OLIGOSACCHARIDE Deposited 1995-12-12	Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics	Assembly 2 Other combination Homooligomer；Protein × 6 PDB declaration: hexameric	Chain A 1–383（383 aa） Chain B 1–383（383 aa） Chain C 1–383（383 aa） Chain D 1–383（383 aa） Chain E 1–383（383 aa） Chain F 1–383（383 aa）	Not recorded	No recorded non-water small molecule	X-RAY DIFFRACTION mmCIF provides none of the parsed conditions	Resolution 3.65 Å R-free 0.264
1SIE MURINE POLYOMAVIRUS COMPLEXED WITH A DISIALYLATED OLIGOSACCHARIDE Deposited 1995-12-12	Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics	Assembly 3 Other combination Homooligomer；Protein × 30 PDB declaration: 30-meric	Chain A 1–383（383 aa） Chain B 1–383（383 aa） Chain C 1–383（383 aa） Chain D 1–383（383 aa） Chain E 1–383（383 aa） Chain F 1–383（383 aa）	Not recorded	No recorded non-water small molecule	X-RAY DIFFRACTION mmCIF provides none of the parsed conditions	Resolution 3.65 Å R-free 0.264
1SIE MURINE POLYOMAVIRUS COMPLEXED WITH A DISIALYLATED OLIGOSACCHARIDE Deposited 1995-12-12	Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics	Assembly 4 Other combination Homooligomer；Protein × 36 PDB declaration: 36-meric	Chain A 1–383（383 aa） Chain B 1–383（383 aa） Chain C 1–383（383 aa） Chain D 1–383（383 aa） Chain E 1–383（383 aa） Chain F 1–383（383 aa）	Not recorded	No recorded non-water small molecule	X-RAY DIFFRACTION mmCIF provides none of the parsed conditions	Resolution 3.65 Å R-free 0.264
1SIE MURINE POLYOMAVIRUS COMPLEXED WITH A DISIALYLATED OLIGOSACCHARIDE Deposited 1995-12-12	Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics	Assembly 5 Other combination Homooligomer；Protein × 6 PDB declaration: hexameric	Chain A 1–383（383 aa） Chain B 1–383（383 aa） Chain C 1–383（383 aa） Chain D 1–383（383 aa） Chain E 1–383（383 aa） Chain F 1–383（383 aa）	Not recorded	No recorded non-water small molecule	X-RAY DIFFRACTION mmCIF provides none of the parsed conditions	Resolution 3.65 Å R-free 0.264
1SIE MURINE POLYOMAVIRUS COMPLEXED WITH A DISIALYLATED OLIGOSACCHARIDE Deposited 1995-12-12	Different construct Different mutation/modification Different oligomeric state Different experimental conditions Different structure-quality metrics	Assembly 6 Other combination Homooligomer；Protein × 30 PDB declaration: 30-meric	Chain A 1–383（383 aa） Chain B 1–383（383 aa） Chain C 1–383（383 aa） Chain D 1–383（383 aa） Chain E 1–383（383 aa） Chain F 1–383（383 aa）	Not recorded	No recorded non-water small molecule	X-RAY DIFFRACTION mmCIF provides none of the parsed conditions	Resolution 3.65 Å R-free 0.264
1VPN UNASSEMBLED POLYOMAVIRUS VP1 PENTAMER Deposited 1997-03-07	Different oligomeric state Different structure-quality metrics	Assembly 1 Protein homooligomer Homooligomer；Protein × 5 PDB declaration: pentameric	Chain A 32–320（289 aa） Chain B 32–320（289 aa） Chain C 32–320（289 aa） Chain D 32–320（289 aa） Chain E 32–320（289 aa）	Not recorded	No recorded non-water small molecule	X-RAY DIFFRACTION X-ray crystallization conditions pH 8；DROP: 1.0 M AMMONIUM PHOSPHATE PH 8.0 2.5 & ETHANOL 8-10 MG/ML PROTEIN RESERVOIR: 2.0 M AMMONIUM PHOSPHATE PH 8.0 5 % ETHANOL	Resolution 2.00 Å R-free 0.199
1VPN UNASSEMBLED POLYOMAVIRUS VP1 PENTAMER Deposited 1997-03-07	Different oligomeric state Different structure-quality metrics	Assembly 2 Protein homooligomer Homooligomer；Protein × 10 PDB declaration: decameric	Chain A 32–320（289 aa） Chain B 32–320（289 aa） Chain C 32–320（289 aa） Chain D 32–320（289 aa） Chain E 32–320（289 aa）	Not recorded	No recorded non-water small molecule	X-RAY DIFFRACTION X-ray crystallization conditions pH 8；DROP: 1.0 M AMMONIUM PHOSPHATE PH 8.0 2.5 & ETHANOL 8-10 MG/ML PROTEIN RESERVOIR: 2.0 M AMMONIUM PHOSPHATE PH 8.0 5 % ETHANOL	Resolution 2.00 Å R-free 0.199
5CPZ Crystal structure of murine polyomavirus RA strain VP1 in complex with the GT1a glycan Deposited 2015-07-21	Different construct Different ligand/ion Different experimental conditions Different structure-quality metrics	Assembly 1 Other combination Homooligomer；Protein × 5 PDB declaration: pentameric	Chain A 34–317（284 aa） Fragment：UNP residues 34-317 Chain B 34–317（284 aa） Fragment：UNP residues 34-317 Chain C 34–317（284 aa） Fragment：UNP residues 34-317 Chain D 34–317（284 aa） Fragment：UNP residues 34-317 Chain E 34–317（284 aa） Fragment：UNP residues 34-317	Not recorded	SO4 SULFATE ION × 14 GOL GLYCEROL × 20	X-RAY DIFFRACTION X-ray crystallization conditions VAPOR DIFFUSION, SITTING DROP；293.15 K；1.7 M ammonium sulfate 4.9% (v/v) isopropanol	Resolution 1.71 Å R-free 0.172
5CQ0 Crystal structure of murine polyomavirus RA strain VP1 in complex with the GD1a glycan Deposited 2015-07-21	Different construct Different ligand/ion Different experimental conditions Different structure-quality metrics	Assembly 1 Other combination Homooligomer；Protein × 5 PDB declaration: pentameric	Chain A 34–317（284 aa） Chain B 34–317（284 aa） Chain C 34–317（284 aa） Chain D 34–317（284 aa） Chain E 34–317（284 aa）	Not recorded	SO4 SULFATE ION × 14 GOL GLYCEROL × 21	X-RAY DIFFRACTION X-ray crystallization conditions VAPOR DIFFUSION, SITTING DROP；293.15 K；1.5 M ammonium sulfate, 6% (v/v) isopropanol	Resolution 1.90 Å R-free 0.178

6 other PDB entries and 18 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence

UniProt name	COA1_POVMP
Isoform	—
PDB entities	1
Chains and sequence ranges	Author chain A； PDBConstruct 1–289； UniProt 32–320 Author chain B； PDBConstruct 1–289； UniProt 32–320 Author chain C； PDBConstruct 1–289； UniProt 32–320 Author chain D； PDBConstruct 1–289； UniProt 32–320 Author chain E； PDBConstruct 1–289； UniProt 32–320

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id	1vps
Deposition date deposition_date	1997-03-07
Structure title title	POLYOMAVIRUS VP1 PENTAMER COMPLEXED WITH A DISIALYLATED HEXASACCHARIDE
Keywords keywords	VIRUS COAT PROTEIN, OLIGOSACCHARIDE BINDING, VIRUS ASSEMBLY, SIALIC ACID, Viral protein; VIRAL PROTEIN
Experimental Method method	X-RAY DIFFRACTION

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3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier	34.63 Å
Radius of gyration Rg (electron density) rg_electron	33.53 Å
Forward intensity I(0) i0	411570000.00
Molecular weight molecular_weight	163110.0 kDa
Excluded volume excluded_volume	203790 Å³
Envelope volume envelope_volume	258690 Å³
Hydration-shell volume shell_volume	59968 Å³
Envelope diameter envelope_diameter	105.3 Å
Shell Rg shell_rg	43.26 Å
Envelope Rg envelope_rg	33.41 Å
Shape Rg shape_rg	33.46 Å
Total Rg total_rg	34.45 Å
Total atoms total_atoms	11464
Residues n_residues	1429
Spherical-harmonic order n_harmonics	20
q range q_range	— – 0.5000 Å⁻¹
Data points n_points	101
Shell type shell_type	directional
Solvent electron density solvent_density	0.3340 e/Å³
Shell contrast contrast_shell	0.0300 e/Å³
CRYSOL version crysol_version	4.1.3

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4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax	103.1 Å
Rg (real space) rg_real	34.37 Å
Rg uncertainty (real space) rg_real_error	0.54 Å
I(0) (real space) i0_real	4.1160e+08
I(0) uncertainty (real space) i0_real_error	6.3890e+06
Rg (reciprocal space) rg_reciprocal	34.53 Å
I(0) (reciprocal space) i0_reciprocal	411600000.0000
Solution quality estimate total_estimate	0.8973
Solution quality rating solution_quality	GOOD a GOOD solution
P(r) peaks n_peaks	1
Primary peak position r_peak_primary	49.3 Å
Skewness Skewness skewness	0.003
Kurtosis Kurtosis kurtosis	-0.540
Angular range angular_range	— – 0.2300 Å⁻¹
Current regularization parameter α current_alpha	0.0000
Highest regularization parameter α highest_alpha	117500000.0000
Real-space data points n_real_points	47
GNOM version gnom_version	4.1.3
Quality Criteria quality_criteria	AN1: 0.000; Oscil: 0.928; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.967; Smooth: 0.910

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5. Crystallography and Experiment 5. Crystallography & Experiment

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6. Entities and Polymers Entities & Polymers (3)

Entity 1 Entity 1 polymer

Description description	POLYOMAVIRUS VP1 PENTAMER
Molecular weight formula_weight	32087.2 kDa
Source method src_method	man
Copy count entity_count	5

Polymer Polymer

Polymer type type	polypeptide(L)
Chain IDs strand_id	A,B,C,D,E
Atom count atom_count	13591

GGMEVLDLVTGPDSVTEIEAFLNPRMGQPPTPESLTEGGQYYGWSRGINLATSDTEDSPGNNTLPTWSMAKLQLPMLNEDLTCDTLQMWEAVSVKTEVVGSGSLLDVHGFNKPTDTVNTKGISTPVEGSQYHVFAVGGEPLDLQGLVTDARTKYKEEGVVTIKTITKKDMVNKDQVLNPISKAKLDKDGMYPVEIWHPDPAKNENTRYFGNYTGGTTTPPVLQFTNTLTTVLLDENGVGPLCKGEGLYLSCVDIMGWRVTRNYDVHHWRGLPRYFKITLRKRWVKNPYP

来源 Source

来源生物 organism	Murine polyomavirus
NCBI Class编号 ncbi_taxonomy_id	10634
宿主生物 host_organism	Escherichia coli

Entity 2 Entity 2 branched

Description description	;N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-3)-[N-acetyl-alpha-neuraminic acid-(2-6)]2-acetamido-2-deoxy-beta-D-glucopyranose ;
Molecular weight formula_weight	965.9 kDa
Source method src_method	man
Copy count entity_count	5

Entity 3 Entity 3 water

Description description	water
Molecular weight formula_weight	18.0 kDa
Source method src_method	nat
Copy count entity_count	2127

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7. Fold Classification (SCOP + CATH) 10 domains

SCOP 2.08 (5 domains)

Domain ID domain_id	d1vpsa_
Class class	b — All beta proteins
Fold Fold fold	b.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily Superfamily superfamily	b.121.6 — Group I dsDNA viruses
Family Family family	b.121.6.1 — Papovaviridae-like VP

Domain ID domain_id	d1vpsb_
Class class	b — All beta proteins
Fold Fold fold	b.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily Superfamily superfamily	b.121.6 — Group I dsDNA viruses
Family Family family	b.121.6.1 — Papovaviridae-like VP

Domain ID domain_id	d1vpsc_
Class class	b — All beta proteins
Fold Fold fold	b.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily Superfamily superfamily	b.121.6 — Group I dsDNA viruses
Family Family family	b.121.6.1 — Papovaviridae-like VP

Domain ID domain_id	d1vpsd_
Class class	b — All beta proteins
Fold Fold fold	b.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily Superfamily superfamily	b.121.6 — Group I dsDNA viruses
Family Family family	b.121.6.1 — Papovaviridae-like VP

Domain ID domain_id	d1vpse_
Class class	b — All beta proteins
Fold Fold fold	b.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily Superfamily superfamily	b.121.6 — Group I dsDNA viruses
Family Family family	b.121.6.1 — Papovaviridae-like VP

CATH v4.4 (5 domains)

Domain ID domain_id	1vpsA00
Class class	2 — Mainly Beta
Architecture architecture	60 — Sandwich
Topology topology	175 — Polyomavirus Vp1; Chain A
Homologous superfamily homologous superfamily	10 — Capsid protein VP1,Polyomavirus

Domain ID domain_id	1vpsB00
Class class	2 — Mainly Beta
Architecture architecture	60 — Sandwich
Topology topology	175 — Polyomavirus Vp1; Chain A
Homologous superfamily homologous superfamily	10 — Capsid protein VP1,Polyomavirus

Domain ID domain_id	1vpsC00
Class class	2 — Mainly Beta
Architecture architecture	60 — Sandwich
Topology topology	175 — Polyomavirus Vp1; Chain A
Homologous superfamily homologous superfamily	10 — Capsid protein VP1,Polyomavirus

Domain ID domain_id	1vpsD00
Class class	2 — Mainly Beta
Architecture architecture	60 — Sandwich
Topology topology	175 — Polyomavirus Vp1; Chain A
Homologous superfamily homologous superfamily	10 — Capsid protein VP1,Polyomavirus

Domain ID domain_id	1vpsE00
Class class	2 — Mainly Beta
Architecture architecture	60 — Sandwich
Topology topology	175 — Polyomavirus Vp1; Chain A
Homologous superfamily homologous superfamily	10 — Capsid protein VP1,Polyomavirus

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8. Citations (4)

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Unit-cell length a length_a	221.500 Å
Unit-cell length b length_b	221.500 Å
Unit-cell length c length_c	99.800 Å
Unit-cell angle α angle_alpha	90.00 °
Unit-cell angle β angle_beta	90.00 °
Unit-cell angle γ angle_gamma	120.00 °
Molecules per unit cell Z z_pdb	30

Space group space_group	P 31 2 1
Space-group number int_tables_number	152
Crystal system crystal_system	—

Resolution resolution	1.900 Å
Low-resolution limit resolution_low	20.000 Å
R factor r_factor	0.1770
R_work r_work	0.1770
R_free r_free	0.2050

fit	/app/data/saxs_computation/vp/1vps/1vps.fit
pddf	/app/data/pr_computation/vp/1vps/1vps.pr.out
profile	/app/data/saxs_computation/vp/1vps/1vps.dat

POLYOMAVIRUS VP1 PENTAMER COMPLEXED WITH A DISIALYLATED HEXASACCHARIDE

1. Protein Identity and Related Structures Protein Identity & Related Structures

POLYOMAVIRUS VP1 PENTAMER

State in the Current Structure

Other States of the Same Protein in the Database

SAXS scattering curve SAXS Profile

P(r) Distance Distribution P(r) Distribution

2. Structure Basics 2. Structure Basics

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

5. Crystallography and Experiment 5. Crystallography & Experiment

Unit cell Unit Cell

Symmetry Symmetry

Refinement Refinement

Diffraction experiment Diffraction