1wg3

Structural analysis of yeast nucleosome-assembly factor CIA1p

Method: X-RAY DIFFRACTION Dmax: 74.8 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

Anti-silencing protein 1

Saccharomyces cerevisiae

UniProt P32447

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein monomer Monomer Protein × 1 PDB declaration: monomeric(1) Consistent with protein copy count Chain A; UniProt 1–169 Not recorded No other associated polymer X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 7.5;293 K;PEG8K, AS, Tris-HCl, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K Resolution 3.00 Å R-free 0.274

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

16 other PDB entries and 26 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name ASF1_YEAST
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 7–175; UniProt 1–169

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 1wg3

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 1wg3
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2. Structure Basics 2. Structure Basics

Entry ID entry_id1wg3
Deposition date deposition_date2004-05-27
Structure title titleStructural analysis of yeast nucleosome-assembly factor CIA1p
Keywords keywordsBETA-SANDWICH, RIKEN Structural Genomics/Proteomics Initiative, RSGI, Structural Genomics, REPLICATION; REPLICATION
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier19.78
Radius of gyration Rg (electron density) rg_electron18.55
Forward intensity I(0) i06447270.00
Molecular weight molecular_weight18501.0 kDa
Excluded volume excluded_volume23160 ų
Envelope volume envelope_volume28147 ų
Hydration-shell volume shell_volume13909 ų
Envelope diameter envelope_diameter73.5
Shell Rg shell_rg23.48
Envelope Rg envelope_rg19.22
Shape Rg shape_rg18.54
Total Rg total_rg19.47
Total atoms total_atoms1307
Residues n_residues166
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax74.8
Rg (real space) rg_real20.01
Rg uncertainty (real space) rg_real_error0.82
I(0) (real space) i0_real6.4470e+06
I(0) uncertainty (real space) i0_real_error9.8070e+04
Rg (reciprocal space) rg_reciprocal19.97
I(0) (reciprocal space) i0_reciprocal6447000.0000
Solution quality estimate total_estimate0.7567
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary18.9
Skewness Skewness skewness0.630
Kurtosis Kurtosis kurtosis0.039
Angular range angular_range— – 0.4000 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha1868000.0000
Real-space data points n_real_points72
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.473; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.442; Smooth: 0.972

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (2)

7. Fold Classification (SCOP + CATH) 3 domains

SCOP 2.08 (2 domains)

Domain ID domain_idd1wg3a1
Class classb — All beta proteins
Fold Fold foldb.1 — Immunoglobulin-like beta-sandwich
Superfamily Superfamily superfamilyb.1.22 — ASF1-like
Family Family familyb.1.22.1 — ASF1-like
Domain ID domain_idd1wg3a2
Class classl — Artifacts
Fold Fold foldl.1 — Tags
Superfamily Superfamily superfamilyl.1.1 — Tags
Family Family familyl.1.1.1 — Tags

CATH v4.4 (1 domains)

Domain ID domain_id1wg3A00
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily1490 — Histone chaperone ASF1-like

8. Citations (1)

9. Files and Curves (10)