1xow

Crystal structure of the human androgen receptor ligand binding domain bound with an androgen receptor NH2-terminal peptide, AR20-30, and R1881

Method: X-RAY DIFFRACTION Dmax: 60.7 Å Quality: REASONABLE

1. Protein Identity and Related Structures Protein Identity & Related Structures

androgen receptor

Homo sapiens

UniProt P10275

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein homooligomer Homooligomer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain A; UniProt 671–919 Chain B; UniProt 20–30 Fragment:ligand binding domain Fragment:N-terminal FXXLF domain R18 (17BETA)-17-HYDROXY-17-METHYLESTRA-4,9,11-TRIEN-3-ONE × 1 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 7.5;293 K;100mM BTP, 0.6-1.2M Li2SO4, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K Resolution 1.80 Å R-free 0.213

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

94 other PDB entries and 96 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name ANDR_HUMAN
Isoform
PDB entities 1, 2
Chains and sequence ranges Author chain A; PDBConstruct 1–249; UniProt 671–919 Author chain B; PDBConstruct 1–11; UniProt 20–30

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 1xow

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 1xow
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2. Structure Basics 2. Structure Basics

Entry ID entry_id1xow
Deposition date deposition_date2004-10-07
Structure title titleCrystal structure of the human androgen receptor ligand binding domain bound with an androgen receptor NH2-terminal peptide, AR20-30, and R1881
Keywords keywords;crystal structure; human androgen receptor ligand binding domain; androgen receptor NH2-terminal peptide AR20-30; R1881, TRANSCRIPTION ;; TRANSCRIPTION
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier19.28
Radius of gyration Rg (electron density) rg_electron17.84
Forward intensity I(0) i014190100.00
Molecular weight molecular_weight29680.0 kDa
Excluded volume excluded_volume37711 ų
Envelope volume envelope_volume41853 ų
Hydration-shell volume shell_volume19315 ų
Envelope diameter envelope_diameter62.1
Shell Rg shell_rg24.42
Envelope Rg envelope_rg18.17
Shape Rg shape_rg17.82
Total Rg total_rg18.88
Total atoms total_atoms2088
Residues n_residues253
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax60.7
Rg (real space) rg_real19.15
Rg uncertainty (real space) rg_real_error0.41
I(0) (real space) i0_real1.4190e+07
I(0) uncertainty (real space) i0_real_error1.9190e+05
Rg (reciprocal space) rg_reciprocal19.17
I(0) (reciprocal space) i0_reciprocal14190000.0000
Solution quality estimate total_estimate0.6662
Solution quality rating solution_quality REASONABLE a REASONABLE solution
P(r) peaks n_peaks3
Primary peak position r_peak_primary24.8
Skewness Skewness skewness0.155
Kurtosis Kurtosis kurtosis-0.388
Angular range angular_range— – 0.4100 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha3340000.0000
Real-space data points n_real_points72
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.866; Stabil: 0.999; Sysdev: 0.356; Positv: 1.000; Valcen: 0.995; Smooth: 0.000

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (4)

7. Fold Classification (SCOP + CATH) 2 domains

SCOP 2.08 (1 domains)

Domain ID domain_idd1xowa_
Class classa — All alpha proteins
Fold Fold folda.123 — Nuclear receptor ligand-binding domain
Superfamily Superfamily superfamilya.123.1 — Nuclear receptor ligand-binding domain
Family Family familya.123.1.1 — Nuclear receptor ligand-binding domain

CATH v4.4 (1 domains)

Domain ID domain_id1xowA00
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology565 — Retinoid X Receptor
Homologous superfamily homologous superfamily10 — Retinoid X Receptor

8. Citations (1)

9. Files and Curves (10)