8fgy

Crystal structure of mutant Androgen Receptor ligand binding domain L702H/H875Y/F877L/T878A with DHT

Method: X-RAY DIFFRACTION Dmax: 59.2 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

Androgen receptor

Homo sapiens

UniProt P10275

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein monomer Monomer Protein × 1 PDB declaration: monomeric(1) Consistent with protein copy count Chain A; UniProt 663–920 Mutation:L702H, H875Y, F877L, T878A DHT 5-ALPHA-DIHYDROTESTOSTERONE × 1 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, SITTING DROP;293 K;0.4-0.8 M sodium citrate, 0.1 M Hepes pH 7.5, 20% (v/v) ethylene glycol Resolution 2.20 Å R-free 0.246

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

94 other PDB entries and 96 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name ANDR_HUMAN
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–258; UniProt 663–920

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 8fgy

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 8fgy
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2. Structure Basics 2. Structure Basics

Entry ID entry_id8fgy
Deposition date deposition_date2022-12-13
Structure title titleCrystal structure of mutant Androgen Receptor ligand binding domain L702H/H875Y/F877L/T878A with DHT
Keywords keywordsAR, Androgen receptor, DHT, steroid receptor, GENE REGULATION; GENE REGULATION
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier19.18
Radius of gyration Rg (electron density) rg_electron17.75
Forward intensity I(0) i012927600.00
Molecular weight molecular_weight28200.0 kDa
Excluded volume excluded_volume35859 ų
Envelope volume envelope_volume40112 ų
Hydration-shell volume shell_volume18721 ų
Envelope diameter envelope_diameter61.3
Shell Rg shell_rg24.25
Envelope Rg envelope_rg18.09
Shape Rg shape_rg17.73
Total Rg total_rg18.81
Total atoms total_atoms2012
Residues n_residues241
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax59.2
Rg (real space) rg_real19.07
Rg uncertainty (real space) rg_real_error0.26
I(0) (real space) i0_real1.2930e+07
I(0) uncertainty (real space) i0_real_error1.3560e+05
Rg (reciprocal space) rg_reciprocal19.09
I(0) (reciprocal space) i0_reciprocal12930000.0000
Solution quality estimate total_estimate0.8991
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary24.7
Skewness Skewness skewness0.183
Kurtosis Kurtosis kurtosis-0.390
Angular range angular_range— – 0.4150 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha2829000.0000
Real-space data points n_real_points73
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.915; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.993; Smooth: 0.946

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (3)

7. Fold Classification (SCOP + CATH) 1 domains

CATH v4.4 (1 domains)

Domain ID domain_id8fgyA01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology565 — Retinoid X Receptor
Homologous superfamily homologous superfamily10 — Retinoid X Receptor

8. Citations (1)

9. Files and Curves (10)