Homo sapiens
| Assembly | Physical composition | Protein state | Molecular copy count | Associated components | Data consistency |
|---|---|---|---|---|---|
| 1 | Protein heterocomplex | Heteromer | Protein 2 | Neddylin × 1 （Q15843） water × 2 | Consistent with protein count |
| UniProt name | SENP8_HUMAN |
| Isoform | — |
| PDB entities | 1 |
| Chains and sequence ranges | Author chain A； PDBConstruct 1–212； UniProt 1–212 |
Homo sapiens
| Assembly | Physical composition | Protein state | Molecular copy count | Associated components | Data consistency |
|---|---|---|---|---|---|
| 1 | Protein heterocomplex | Heteromer | Protein 2 | Sentrin-specific protease 8 × 1 （Q96LD8） water × 2 | Consistent with protein count |
| UniProt name | NEDD8_HUMAN |
| Isoform | — |
| PDB entities | 2 |
| Chains and sequence ranges | Author chain B； PDBConstruct 1–76； UniProt 1–76 |
The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.
| Entry ID entry_id | 1xt9 |
| Deposition date deposition_date | 2004-10-21 |
| Structure title title | Crystal Structure of Den1 in complex with Nedd8 |
| Keywords keywords | Cysteine protease, ubiquitin-like, HYDROLASE-HYDROLASE INHIBITOR COMPLEX; HYDROLASE/HYDROLASE INHIBITOR |
| Experimental Method method | X-RAY DIFFRACTION |
This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.
Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)
| Rg（Guinier） | 19.46 Å |
| Rg (electron density) | 18.28 Å |
| Total Rg | 19.30 Å |
| Atom count | 2268 |
| Residues | 284 |
| Excluded volume | 40445 ų |
| Maximum q | 0.500 Å⁻¹ |
| Domain ID domain_id | d1xt9a_ |
| Class class | d — Alpha and beta proteins (a+b) |
| Fold Fold fold | d.3 — Cysteine proteinases |
| Superfamily Superfamily superfamily | d.3.1 — Cysteine proteinases |
| Family Family family | d.3.1.7 — Adenain-like |
| Domain ID domain_id | d1xt9b_ |
| Class class | d — Alpha and beta proteins (a+b) |
| Fold Fold fold | d.15 — beta-Grasp (ubiquitin-like) |
| Superfamily Superfamily superfamily | d.15.1 — Ubiquitin-like |
| Family Family family | d.15.1.1 — Ubiquitin-related |
| Domain ID domain_id | 1xt9A00 |
| Class class | 3 — Alpha Beta |
| Architecture architecture | 40 — 3-Layer(aba) Sandwich |
| Topology topology | 395 — Adenoviral Proteinase; Chain |
| Homologous superfamily homologous superfamily | 10 — Adenoviral Proteinase; Chain A |
| Domain ID domain_id | 1xt9B00 |
| Class class | 3 — Alpha Beta |
| Architecture architecture | 10 — Roll |
| Topology topology | 20 — Ubiquitin-like (UB roll) |
| Homologous superfamily homologous superfamily | 90 — Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 |