1zsh

Crystal structure of bovine arrestin-2 in complex with inositol hexakisphosphate (IP6)

Method: X-RAY DIFFRACTION Dmax: 74.0 Å Quality: REASONABLE

1. Protein Identity and Related Structures Protein Identity & Related Structures

Beta-arrestin 1

Bos taurus

UniProt P17870

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein monomer Monomer Protein × 1 PDB declaration: monomeric(1) Consistent with protein copy count Chain A; UniProt 1–418 Not recorded MG MAGNESIUM ION × 1 IHP INOSITOL HEXAKISPHOSPHATE × 1 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 7.2;298 K;Magnesium Formate, HEPES, Polypropylene glycol 400, pH 7.2, VAPOR DIFFUSION, HANGING DROP, temperature 298K Resolution 2.90 Å R-free 0.260

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

23 other PDB entries and 26 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name ARRB1_BOVIN
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–418; UniProt 1–418

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 1zsh

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 1zsh
Download Download

2. Structure Basics 2. Structure Basics

Entry ID entry_id1zsh
Deposition date deposition_date2005-05-24
Structure title titleCrystal structure of bovine arrestin-2 in complex with inositol hexakisphosphate (IP6)
Keywords keywordsNonvisual arrestins, beta-arrestins, signal transduction, SIGNALING PROTEIN; SIGNALING PROTEIN
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier25.74
Radius of gyration Rg (electron density) rg_electron25.38
Forward intensity I(0) i027655600.00
Molecular weight molecular_weight40475.0 kDa
Excluded volume excluded_volume50807 ų
Envelope volume envelope_volume62693 ų
Hydration-shell volume shell_volume22761 ų
Envelope diameter envelope_diameter97.1
Shell Rg shell_rg29.97
Envelope Rg envelope_rg25.63
Shape Rg shape_rg25.36
Total Rg total_rg25.98
Total atoms total_atoms2841
Residues n_residues354
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax74.0
Rg (real space) rg_real24.36
Rg uncertainty (real space) rg_real_error0.19
I(0) (real space) i0_real2.6560e+07
I(0) uncertainty (real space) i0_real_error2.8630e+05
Rg (reciprocal space) rg_reciprocal25.95
I(0) (reciprocal space) i0_reciprocal27650000.0000
Solution quality estimate total_estimate0.6710
Solution quality rating solution_quality REASONABLE a REASONABLE solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary25.1
Skewness Skewness skewness0.469
Kurtosis Kurtosis kurtosis-0.271
Angular range angular_range— – 0.3100 −1
Current regularization parameter α current_alpha2.1910
Highest regularization parameter α highest_alpha5872000.0000
Real-space data points n_real_points63
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.935; Stabil: 0.980; Sysdev: 0.000; Positv: 1.000; Valcen: 0.986; Smooth: 0.000

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (4)

7. Fold Classification (SCOP + CATH) 4 domains

SCOP 2.08 (2 domains)

Domain ID domain_idd1zsha1
Class classb — All beta proteins
Fold Fold foldb.1 — Immunoglobulin-like beta-sandwich
Superfamily Superfamily superfamilyb.1.18 — E set domains
Family Family familyb.1.18.11 — Arrestin/Vps26-like
Domain ID domain_idd1zsha2
Class classb — All beta proteins
Fold Fold foldb.1 — Immunoglobulin-like beta-sandwich
Superfamily Superfamily superfamilyb.1.18 — E set domains
Family Family familyb.1.18.11 — Arrestin/Vps26-like

CATH v4.4 (2 domains)

Domain ID domain_id1zshA01
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily840
Domain ID domain_id1zshA02
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily640

8. Citations (1)

9. Files and Curves (10)