9uco

Cryo-EM structure of ADGRE1-beta arrestin1-scFv30 complex

Method: ELECTRON MICROSCOPY Dmax: 158.5 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

Beta-arrestin-1

Mus musculus

UniProt P17870

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 10 PDB declaration: decameric(10) Consistent with protein copy count Chain A; UniProt 1–376 Chain C; UniProt 1–376 Not recorded scFv30 × 4 Adhesion G protein-coupled receptor E1 × 2 (Q61549) Adhesion G protein-coupled receptor E1 × 2 (Q61549) ELECTRON MICROSCOPY cryo-EM buffer:pH 7.4 cryo-EM vitrification conditions:Cryogen ETHANE Resolution 3.58 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

23 other PDB entries and 26 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name ARRB1_BOVIN
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–376; UniProt 1–376 Author chain C; PDBConstruct 1–376; UniProt 1–376

Adhesion G protein-coupled receptor E1

Mus musculus

UniProt Q61549

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 10 PDB declaration: decameric(10) Consistent with protein copy count Chain G; UniProt 630–644 Chain H; UniProt 645–931 Chain L; UniProt 630–644 Chain R; UniProt 645–931 Not recorded Beta-arrestin-1 × 2 (P17870) scFv30 × 4 ELECTRON MICROSCOPY cryo-EM buffer:pH 7.4 cryo-EM vitrification conditions:Cryogen ETHANE Resolution 3.58 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

No other PDB entry for the same UniProt protein was found.

View Construct and Data Evidence
UniProt name AGRE1_MOUSE
Isoform
PDB entities 3, 4
Chains and sequence ranges Author chain G; PDBConstruct 1–15; UniProt 630–644 Author chain L; PDBConstruct 1–15; UniProt 630–644 Author chain H; PDBConstruct 1–287; UniProt 645–931 Author chain R; PDBConstruct 1–287; UniProt 645–931

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 9uco

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 9uco
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2. Structure Basics 2. Structure Basics

Entry ID entry_id9uco
Deposition date deposition_date2025-04-04
Structure title titleCryo-EM structure of ADGRE1-beta arrestin1-scFv30 complex
Keywords keywordscomplex, membrane protein, ADGRE1; MEMBRANE PROTEIN
Experimental Method methodELECTRON MICROSCOPY

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier46.81
Radius of gyration Rg (electron density) rg_electron46.38
Forward intensity I(0) i0394667000.00
Molecular weight molecular_weight171850.0 kDa
Excluded volume excluded_volume218250 ų
Envelope volume envelope_volume322470 ų
Hydration-shell volume shell_volume59253 ų
Envelope diameter envelope_diameter169.7
Shell Rg shell_rg49.73
Envelope Rg envelope_rg44.80
Shape Rg shape_rg46.37
Total Rg total_rg46.58
Total atoms total_atoms12144
Residues n_residues1653
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax158.5
Rg (real space) rg_real46.74
Rg uncertainty (real space) rg_real_error1.94
I(0) (real space) i0_real3.9470e+08
I(0) uncertainty (real space) i0_real_error9.0570e+06
Rg (reciprocal space) rg_reciprocal46.81
I(0) (reciprocal space) i0_reciprocal394700000.0000
Solution quality estimate total_estimate0.8169
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks3
Primary peak position r_peak_primary55.9
Skewness Skewness skewness0.176
Kurtosis Kurtosis kurtosis-0.492
Angular range angular_range— – 0.1700 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha23240000.0000
Real-space data points n_real_points35
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.872; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 1.000; Smooth: 0.000

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (4)

8. Citations (1)

9. Files and Curves (10)