SAXSdb — 9uco

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1. Structure Basics

entry_id	9uco
deposition_date	2025-04-04
title	Cryo-EM structure of ADGRE1-beta arrestin1-scFv30 complex
keywords	complex, membrane protein, ADGRE1; MEMBRANE PROTEIN
method	ELECTRON MICROSCOPY

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	46.81 Å
rg_electron	46.38 Å
i0	394667000.00
molecular_weight	171850.0 kDa
excluded_volume	218250 Å³
envelope_volume	322470 Å³
shell_volume	59253 Å³
envelope_diameter	169.7 Å
shell_rg	49.73 Å
envelope_rg	44.80 Å
shape_rg	46.37 Å
total_rg	46.58 Å
total_atoms	12144
n_residues	1653
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	158.5 Å
rg_real	46.74 Å
rg_real_error	1.94 Å
i0_real	3.9470e+08
i0_real_error	9.0570e+06
rg_reciprocal	46.81 Å
i0_reciprocal	394700000.0000
total_estimate	0.8169
solution_quality	GOOD a GOOD solution
n_peaks	3
r_peak_primary	55.9 Å
skewness	0.176
kurtosis	-0.492
angular_range	— – 0.1700 Å⁻¹
current_alpha	0.0000
highest_alpha	23240000.0000
n_real_points	35
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.872; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 1.000; Smooth: 0.000

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4. Crystallography & Experiment

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5. Entities & Polymer Info (4)

Entity 1 polymer

description	Beta-arrestin-1
formula_weight	42177.2 kDa
src_method	man
entity_count	2

Polymer

type	polypeptide(L)
strand_id	A,C
atom_count	12144

MGDKGTRVFKKASPNGKLTVYLGKRDFVDHIDLVEPVDGVVLVDPEYLKERRVYVTLTAAFRYGREDLDVLGLTFRKDLFVANVQSFPPAPEDKKPLTRLQERLIKKLGEHAYPFTFEIPPNLPSSVTLQPGPEDTGKAIGVDYEVKAFVAENLEEKIHKRNSVRLVIEKVQYAPERPGPQPTAETTRQFLMSDKPLHLEASLDKEIYYHGEPISVNVHVTNNTNKTVKKIKISVRQYADIVLFNTAQYKVPVAMEEADDTVAPSSTFSKVYTLTPFLANNREKRGLALDGKLKHEDTNLASSTLLREGANREILGIIVSYKVKVKLVVSRGGLLGDLASSSVAVELPFTLMHPKPKEEPPHREVPEHETPVDTNL

Source

organism	Mus musculus
common_name	house mouse
ncbi_taxonomy_id	10090
host_organism	Spodoptera frugiperda

Entity 2 polymer

description	scFv30
formula_weight	26986.7 kDa
src_method	man
entity_count	4

Polymer

type	polypeptide(L)
strand_id	B,F,D,E

SDIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQYKYVPVTFGQGTKVEIKGTTAASGSSGGSSSGAEVQLVESGGGLVQPGGSLRLSCAASGFNVYSSSIHWVRQAPGKGLEWVASISSYYGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARSRQFWYSGLDYWGQGTLVTVSSAHHHHHH

Source

organism	Bos taurus
ncbi_taxonomy_id	9913
host_organism	Spodoptera frugiperda

Entity 3 polymer

description	Adhesion G protein-coupled receptor E1
formula_weight	1563.8 kDa
src_method	man
entity_count	2

Polymer

type	polypeptide(L)
strand_id	L,G

ANLAIIMASGELTME

Source

organism	Mus musculus
common_name	house mouse
ncbi_taxonomy_id	10090
host_organism	Spodoptera frugiperda

Entity 4 polymer

description	Adhesion G protein-coupled receptor E1
formula_weight	32333.8 kDa
src_method	man
entity_count	2

Polymer

type	polypeptide(L)
strand_id	R,H

FSLYIISHVGTVISLVCLALAIATFLLCRAVQNHNTYMHLHLCVCLFLAKILFLTGIDKTDNQTACAIIAGFLHYLFLACFFWMLVEAVMLFLMVRNLKVVNYFSSRNIKMLHLCAFGYGLPVLVVIISASVQPRGYGMHNRCWLNTETGFIWSFLGPVCMIITINSVLLAWTLWVLRQKLCSVSSEVSKLKDTRLLTFKAIAQIFILGCSWVLGIFQIGPLASIMAWLFTIINSLQGAFIFLIHCLLNRQVRDEYKKLLTRKTDLSSHSQTSGILLSSMPSTSKMG

Source

organism	Mus musculus
common_name	house mouse
ncbi_taxonomy_id	10090
host_organism	Spodoptera frugiperda

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6. Citations (1)

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length_a	1.000 Å
length_b	1.000 Å
length_c	1.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	—

space_group	P 1
int_tables_number	1
crystal_system	—

resolution	3.580 Å
resolution_low	— Å
r_factor	—
r_work	—
r_free	—

resolution	3.58 Å
resolution_method	—
num_particles	140558

fit	/app/data/saxs_computation/uc/9uco/9uco.fit
pddf	/app/data/pr_computation/uc/9uco/9uco.pr.out
profile	/app/data/saxs_computation/uc/9uco/9uco.dat

Cryo-EM structure of ADGRE1-beta arrestin1-scFv30 complex

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

EM 3D

5. Entities & Polymer Info (4)

Entity 1 polymer

Polymer

Source

Entity 2 polymer

Polymer

Source

Entity 3 polymer

Polymer

Source

Entity 4 polymer

Polymer

Source

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)