2ala

Crystal structure of the Semliki Forest Virus envelope protein E1 in its monomeric conformation.

Method: X-RAY DIFFRACTION Dmax: 129.3 Å Quality: REASONABLE

1. Protein Identity and Related Structures Protein Identity & Related Structures

Structural polyprotein (P130)

OrganismNot specified

UniProt P03315

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein monomer Monomer Protein × 1 PDB declaration: monomeric(1) Consistent with protein copy count Chain A; UniProt 816–1206 Fragment:Spike glycoprotein E1 No other associated polymer X-RAY DIFFRACTION X-ray crystallization conditions:EVAPORATION;pH 8.1;293 K;PEG 8K, pH 8.1, EVAPORATION, temperature 293K Resolution 3.00 Å R-free 0.319

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

13 other PDB entries and 21 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name POLS_SFV
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–391; UniProt 816–1206

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 2ala

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 2ala
Download Download

2. Structure Basics 2. Structure Basics

Entry ID entry_id2ala
Deposition date deposition_date2005-08-05
Structure title titleCrystal structure of the Semliki Forest Virus envelope protein E1 in its monomeric conformation.
Keywords keywordsEnvelope glycoprotein, Membrane Fusion, Viral protein; VIRAL PROTEIN
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier35.43
Radius of gyration Rg (electron density) rg_electron36.37
Forward intensity I(0) i029197700.00
Molecular weight molecular_weight41833.0 kDa
Excluded volume excluded_volume52059 ų
Envelope volume envelope_volume70399 ų
Hydration-shell volume shell_volume20009 ų
Envelope diameter envelope_diameter133.5
Shell Rg shell_rg33.89
Envelope Rg envelope_rg36.33
Shape Rg shape_rg36.30
Total Rg total_rg36.40
Total atoms total_atoms2935
Residues n_residues384
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax129.3
Rg (real space) rg_real36.28
Rg uncertainty (real space) rg_real_error1.70
I(0) (real space) i0_real2.9200e+07
I(0) uncertainty (real space) i0_real_error5.1490e+05
Rg (reciprocal space) rg_reciprocal35.75
I(0) (reciprocal space) i0_reciprocal29180000.0000
Solution quality estimate total_estimate0.6388
Solution quality rating solution_quality REASONABLE a REASONABLE solution
P(r) peaks n_peaks1
Primary peak position r_peak_primary20.1
Skewness Skewness skewness0.676
Kurtosis Kurtosis kurtosis-0.353
Angular range angular_range— – 0.2250 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha1362000.0000
Real-space data points n_real_points46
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.245; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.062; Smooth: 0.504

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (2)

7. Fold Classification (SCOP + CATH) 4 domains

SCOP 2.08 (2 domains)

Domain ID domain_idd2alaa1
Class classb — All beta proteins
Fold Fold foldb.1 — Immunoglobulin-like beta-sandwich
Superfamily Superfamily superfamilyb.1.18 — E set domains
Family Family familyb.1.18.0 — automated matches
Domain ID domain_idd2alaa2
Class classf — Membrane and cell surface proteins and peptides
Fold Fold foldf.10 — Viral glycoprotein, central and dimerisation domains
Superfamily Superfamily superfamilyf.10.1 — Viral glycoprotein, central and dimerisation domains
Family Family familyf.10.1.1 — Viral glycoprotein, central and dimerisation domains

CATH v4.4 (2 domains)

Domain ID domain_id2alaA01
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology98 — Tick-borne Encephalitis virus Glycoprotein; domain 1
Homologous superfamily homologous superfamily10 — Tick-borne Encephalitis virus Glycoprotein, domain 1
Domain ID domain_id2alaA03
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily350

8. Citations (3)

9. Files and Curves (10)