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2c9f

THE QUASI-ATOMIC MODEL OF THE ADENOVIRUS TYPE 3 PENTON DODECAHEDRON

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

PENTON PROTEIN

HUMAN ADENOVIRUS TYPE 2

UniProt P03276

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 120 FIBER × 60 （Q64831） Consistent with protein count
2 Protein heterocomplex Heteromer Protein 2 FIBER × 1 （Q64831） Consistent with protein count
3 Protein heterocomplex Heteromer Protein 10 FIBER × 5 （Q64831） Consistent with protein count
4 Protein heterocomplex Heteromer Protein 12 FIBER × 6 （Q64831） Consistent with protein count
5 Protein heterocomplex Heteromer Protein 2 FIBER × 1 （Q64831） Consistent with protein count

Other States of the Same Protein in the Database

Monomer
1x9p 1x9p 2c9g 2c9g

4 assemblies

Homodimer

None

Homotetramer

None

Other homooligomers
1x9p 1x9p 1x9p 1x9p 2c6s 2c9g 2c9g 2c9g

8 assemblies

Heteromeric or nucleic-acid complex
1x9t 1x9t 1x9t 1x9t 1x9t 1x9t 2c9f 2c9f 2c9f 2c9f 2c9f 4v4u

14 assemblies; showing the first 12

View Construct and Data Evidence
UniProt name PEN3_ADE02
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A； PDBConstruct 1–248； UniProt 49–296 Author chain A； PDBConstruct 249–326； UniProt 297–374 Author chain A； PDBConstruct 327–523； UniProt 375–571 Author chain B； PDBConstruct 1–248； UniProt 49–296 Author chain B； PDBConstruct 249–326； UniProt 297–374 Author chain B； PDBConstruct 327–523； UniProt 375–571 Author chain C； PDBConstruct 1–248； UniProt 49–296 Author chain C； PDBConstruct 249–326； UniProt 297–374 Author chain C； PDBConstruct 327–523； UniProt 375–571 Author chain D； PDBConstruct 1–248； UniProt 49–296 Author chain D； PDBConstruct 249–326； UniProt 297–374 Author chain D； PDBConstruct 327–523； UniProt 375–571 Author chain E； PDBConstruct 1–248； UniProt 49–296 Author chain E； PDBConstruct 249–326； UniProt 297–374 Author chain E； PDBConstruct 327–523； UniProt 375–571

FIBER

OrganismNot specified

UniProt Q64831

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 120 PENTON PROTEIN × 60 （P03276） Consistent with protein count
2 Protein heterocomplex Heteromer Protein 2 PENTON PROTEIN × 1 （P03276） Consistent with protein count
3 Protein heterocomplex Heteromer Protein 10 PENTON PROTEIN × 5 （P03276） Consistent with protein count
4 Protein heterocomplex Heteromer Protein 12 PENTON PROTEIN × 6 （P03276） Consistent with protein count
5 Protein heterocomplex Heteromer Protein 2 PENTON PROTEIN × 1 （P03276） Consistent with protein count

Other States of the Same Protein in the Database

Monomer

None

Homodimer

None

Homotetramer

None

Other homooligomers

None

Heteromeric or nucleic-acid complex
2c9f 2c9f 2c9f 2c9f 2c9f

5 assemblies

View Construct and Data Evidence
UniProt name Q64831_ADE05
Isoform —
PDB entities 2
Chains and sequence ranges Author chain S； PDBConstruct 1–19； UniProt 1–19 Author chain T； PDBConstruct 1–19； UniProt 1–19 Author chain U； PDBConstruct 1–19； UniProt 1–19 Author chain V； PDBConstruct 1–19； UniProt 1–19 Author chain W； PDBConstruct 1–19； UniProt 1–19

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id2c9f
Deposition date deposition_date2005-12-12
Structure title titleTHE QUASI-ATOMIC MODEL OF THE ADENOVIRUS TYPE 3 PENTON DODECAHEDRON
Keywords keywordsVIRUS-VIRAL PROTEIN COMPLEX, DODECAHEDRON, PENTON, FIBRE; VIRUS/VIRAL PROTEIN
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

2c9f__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

2c9f__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 1010 1011 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

2c9f__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg（Guinier）96.71 Å
Rg (electron density)96.30 Å
Total Rg96.36 Å
Atom count216300
Residues27000
Excluded volume3832100 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 2c9f__assembly_1__model_1 120-MERIC （120） Success 4.1.3-1-20251215 (887e7ef) View Download
2 1 2c9f__assembly_2__model_1 dimeric （2） Excluded — —
Exclusion reason： Auxiliary symmetry representation; not a complete or representative biological assembly.
3 1 2c9f__assembly_3__model_1 decameric （10） Excluded — —
Exclusion reason： Auxiliary symmetry representation; not a complete or representative biological assembly.
4 1 2c9f__assembly_4__model_1 dodecameric （12） Excluded — —
Exclusion reason： Auxiliary symmetry representation; not a complete or representative biological assembly.
5 1 2c9f__assembly_5__model_1 dimeric （2） Excluded — —
Exclusion reason： Auxiliary symmetry representation; not a complete or representative biological assembly.
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (2)

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7. Citations (1)