SAXSdb — 4v4u

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1. Protein Identity and Related Structures Protein Identity & Related Structures

PENTON PROTEIN

HUMAN ADENOVIRUS 2

State in the Current Structure

Assembly	Physical composition	Protein state	Molecular copy count	Associated components	Data consistency
1	Protein heterocomplex	Heteromer	Protein 840	N-TERMINAL PEPTIDE OF FIBER PROTEIN × 60 HEXON PROTEIN × 720 （P04133）	Consistent with protein count
2	Protein heterocomplex	Heteromer	Protein 22	N-TERMINAL PEPTIDE OF FIBER PROTEIN × 5 HEXON PROTEIN × 12 （P04133）	Consistent with protein count
3	Protein heterocomplex	Heteromer	Protein 22	N-TERMINAL PEPTIDE OF FIBER PROTEIN × 5 HEXON PROTEIN × 12 （P04133）	Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence

UniProt name	PEN3_ADE02
Isoform	—
PDB entities	1
Chains and sequence ranges	Author chain A； PDBConstruct 1–523； UniProt 49–571 Author chain B； PDBConstruct 1–523； UniProt 49–571 Author chain C； PDBConstruct 1–523； UniProt 49–571 Author chain D； PDBConstruct 1–523； UniProt 49–571 Author chain E； PDBConstruct 1–523； UniProt 49–571

HEXON PROTEIN

HUMAN ADENOVIRUS TYPE 5

UniProt P04133

State in the Current Structure

Assembly	Physical composition	Protein state	Molecular copy count	Associated components	Data consistency
1	Protein heterocomplex	Heteromer	Protein 840	PENTON PROTEIN × 60 （P03276） N-TERMINAL PEPTIDE OF FIBER PROTEIN × 60	Consistent with protein count
2	Protein heterocomplex	Heteromer	Protein 22	PENTON PROTEIN × 5 （P03276） N-TERMINAL PEPTIDE OF FIBER PROTEIN × 5	Consistent with protein count
3	Protein heterocomplex	Heteromer	Protein 22	PENTON PROTEIN × 5 （P03276） N-TERMINAL PEPTIDE OF FIBER PROTEIN × 5	Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence

UniProt name	HEX_ADE05
Isoform	—
PDB entities	3
Chains and sequence ranges	Author chain F； PDBConstruct 1–951； UniProt 1–951 Author chain G； PDBConstruct 1–951； UniProt 1–951 Author chain H； PDBConstruct 1–951； UniProt 1–951 Author chain I； PDBConstruct 1–951； UniProt 1–951 Author chain J； PDBConstruct 1–951； UniProt 1–951 Author chain K； PDBConstruct 1–951； UniProt 1–951 Author chain L； PDBConstruct 1–951； UniProt 1–951 Author chain M； PDBConstruct 1–951； UniProt 1–951 Author chain N； PDBConstruct 1–951； UniProt 1–951 Author chain O； PDBConstruct 1–951； UniProt 1–951 Author chain P； PDBConstruct 1–951； UniProt 1–951 Author chain Q； PDBConstruct 1–951； UniProt 1–951

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id	4v4u
Deposition date deposition_date	2005-03-03
Structure title title	The quasi-atomic model of Human Adenovirus type 5 capsid
Keywords keywords	VIRUS, ADENOVIRUS, MINOR CAPSID PROTEIN, QUASI ATOMIC; VIRUS
Experimental Method method	ELECTRON MICROSCOPY

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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

4v4u__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

4v4u__assembly_1__model_1 | I(q)

100 plotted points; both axes use logarithmic scales.

4v4u__assembly_1__model_1 | P(r) · Pending

P(r) will be calculated and displayed separately for the same assembly/model.

Rg（Guinier）	0.00 Å
Rg (electron density)	392.80 Å
Total Rg	392.80 Å
Atom count	5214540
Residues	663480
Excluded volume	92051000 Å³
Maximum q	0.500 Å⁻¹

Assembly	Model	Structure unit	Oligomeric description	Status	CRYSOL	Actions
1	1	`4v4u__assembly_1__model_1`	840-meric （840）	Success	4.1.3-1-20251215 (887e7ef)	View Download
2	1	`4v4u__assembly_2__model_1`	22-meric （22）	Excluded	—	—
	Exclusion reason： Auxiliary symmetry representation; not a complete or representative biological assembly.
3	1	`4v4u__assembly_3__model_1`	22-meric （22）	Excluded	—	—
	Exclusion reason： Auxiliary symmetry representation; not a complete or representative biological assembly.

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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (3)

Entity 1 Entity 1 polymer

Description description	PENTON PROTEIN
Molecular weight formula_weight	58218.7 kDa
Source method src_method	man
Copy count entity_count	5

Polymer Polymer

Polymer type type	polypeptide(L)
Chain IDs strand_id	A,B,C,D,E
Atom count atom_count	101329

TGGRNSIRYSELAPLFDTTRVYLVDNKSTDVASLNYQNDHSNFLTTVIQNNDYSPGEASTQTINLDDRSHWGGDLKTILHTNMPNVNEFMFTNKFKARVMVSRSLTKDKQVELKYEWVEFTLPEGNYSETMTIDLMNNAIVEHYLKVGRQNGVLESDIGVKFDTRNFRLGFDPVTGLVMPGVYTNEAFHPDIILLPGCGVDFTHSRLSNLLGIRKRQPFQEGFRITYDDLEGGNIPALLDVDAYQASLKDDTEQGGDGAGGGNNSGSGAEENSNAAAAAMQPVEDMNDHAIRGDTFATRAEEKRAEAEAAAEAAAPAAQPEVEKPQKKPVIKPLTEDSKKRSYNLISNDSTFTQYRSWYLAYNYGDPQTGIRSWTLLCTPDVTCGSEQVYWSLPDMMQDPVTFRSTSQISNFPVVGAELLPVHSKSFYNDQAVYSQLIRQFTSLTHVFNRFPENQILARPPAPTITTVSENVPALTDHGTLPLRNSIGGVQRVTITDARRRTCPYVYKALGIVSPRVLSSRTF

Source Source

Source organism organism	HUMAN ADENOVIRUS 2
NCBI taxonomy ID ncbi_taxonomy_id	10515
Host organism host_organism	TRICHOPLUSIA NI

Entity 2 Entity 2 polymer

Description description	N-TERMINAL PEPTIDE OF FIBER PROTEIN
Molecular weight formula_weight	1216.3 kDa
Source method src_method	syn
Copy count entity_count	5

Polymer Polymer

Polymer type type	polypeptide(L)
Chain IDs strand_id	S,T,U,V,W

TFNPVYPYDT

Entity 3 Entity 3 polymer

Description description	HEXON PROTEIN
Molecular weight formula_weight	107976.4 kDa
Source method src_method	man
Copy count entity_count	12

Polymer Polymer

Polymer type type	polypeptide(L)
Chain IDs strand_id	F,G,H,I,J,K,L,M,N,O,P,Q

ATPSMMPQWSYMHISGQDASEYLSPGLVQFARATETYFSLNNKFRNPTVAPTHDVTTDRSQRLTLRFIPVDREDTAYSYKARFTLAVGDNRVLDMASTYFDIRGVLDRGPTFKPYSGTAYNALAPKGAPNPCEWDEAATALEINLEEEDDDNEDEVDEQAEQQKTHVFGQAPYSGINITKEGIQIGVEGQTPKYADKTFQPEPQIGESQWYETEINHAAGRVLKKTTPMKPCYGSYAKPTNENGGQGILVKQQNGKLESQVEMQFFSTTEATAGNGDNLTPKVVLYSEDVDIETPDTHISYMPTIKEGNSRELMGQQSMPNRPNYIAFRDNFIGLMYYNSTGNMGVLAGQASQLNAVVDLQDRNTELSYQLLLDSIGDRTRYFSMWNQAVDSYDPDVRIIENHGTEDELPNYCFPLGGVINTETLTKVKPKTGQENGWEKDATEFSDKNEIRVGNNFAMEINLNANLWRNFLYSNIALYLPDKLKYSPSNVKISDNPNTYDYMNKRVVAPGLVDCYINLGARWSLDYMDNVNPFNHHRNAGLRYRSMLLGNGRYVPFHIQVPQKFFAIKNLLLLPGSYTYEWNFRKDVNMVLQSSLGNDLRVDGASIKFDSICLYATFFPMAHNTASTLEAMLRNDTNDQSFNDYLSAANMLYPIPANATNVPISIPSRNWAAFRGWAFTRLKTKETPSLGSGYDPYYTYSGSIPYLDGTFYLNHTFKKVAITFDSSVSWPGNDRLLTPNEFEIKRSVDGEGYNVAQCNMTKDWFLVQMLANYNIGYQGFYIPESYKDRMYSFFRNFQPMSRQVVDDTKYKDYQQVGILHQHNNSGFVGYLAPTMREGQAYPANFPYPLIGKTAVDSITQKKFLCDRTLWRIPFSSNFMSMGALTDLGQNLLYANSAHALDMTFEVDPMDEPTLLYVLFEVFDVVRVHRPHRGVIETVYLRTPFSAGNATT

Source Source

Source organism organism	HUMAN ADENOVIRUS TYPE 5
NCBI taxonomy ID ncbi_taxonomy_id	28285
Host organism host_organism	HOMO SAPIENS

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Unit-cell length a length_a	1.000 Å
Unit-cell length b length_b	1.000 Å
Unit-cell length c length_c	1.000 Å
Unit-cell angle α angle_alpha	90.00 °
Unit-cell angle β angle_beta	90.00 °
Unit-cell angle γ angle_gamma	90.00 °
Molecules per unit cell Z z_pdb	1

Space group space_group	P 1
Space-group number int_tables_number	1
Crystal system crystal_system	—

Resolution resolution	10.000 Å
Low-resolution limit resolution_low	— Å
R factor r_factor	—
R_work r_work	—
R_free r_free	—

Resolution resolution	10.00 Å
Resolution测定Method resolution_method	POLAR FOURIER TRANSFORM, FOURIER BESSELS RECONSTRUCTION
颗粒数 num_particles	4100

The quasi-atomic model of Human Adenovirus type 5 capsid

1. Protein Identity and Related Structures Protein Identity & Related Structures

PENTON PROTEIN

State in the Current Structure

Other States of the Same Protein in the Database

HEXON PROTEIN

State in the Current Structure

Other States of the Same Protein in the Database

2. Structure Basics 2. Structure Basics

3. Official assembly/model SAXS Official SAXS Profiles

4v4u__assembly_1__model_1

4v4u__assembly_1__model_1 | I(q)

4v4u__assembly_1__model_1 | P(r) · Pending

4. Crystallography and Experiment 4. Crystallography & Experiment

Unit cell Unit Cell

Symmetry Symmetry

Refinement Refinement

冷冻电镜 EM 3D

5. Entities and Polymers Entities & Polymers (3)

Entity 1 Entity 1 polymer

Polymer Polymer

Source Source

Entity 2 Entity 2 polymer

Polymer Polymer

Entity 3 Entity 3 polymer

Polymer Polymer

Source Source

7. Citations (1)

The quasi-atomic model of Human Adenovirus type 5 capsid

1. Protein Identity and Related Structures Protein Identity & Related Structures

PENTON PROTEIN

State in the Current Structure

Other States of the Same Protein in the Database

Monomer

Homodimer

Homotetramer

Other homooligomers

Heteromeric or nucleic-acid complex

HEXON PROTEIN

State in the Current Structure

Other States of the Same Protein in the Database

Monomer

Homodimer

Homotetramer

Other homooligomers

Heteromeric or nucleic-acid complex

2. Structure Basics 2. Structure Basics

3. Official assembly/model SAXS Official SAXS Profiles

4v4u__assembly_1__model_1

4v4u__assembly_1__model_1 | I(q)

4v4u__assembly_1__model_1 | P(r) · Pending

4. Crystallography and Experiment 4. Crystallography & Experiment

Unit cell Unit Cell

Symmetry Symmetry

Refinement Refinement

冷冻电镜 EM 3D

5. Entities and Polymers Entities & Polymers (3)

Entity 1 Entity 1 polymer

Polymer Polymer

Source Source

Entity 2 Entity 2 polymer

Polymer Polymer

Entity 3 Entity 3 polymer

Polymer Polymer

Source Source

7. Citations (1)