2dys
Bovine heart cytochrome C oxidase modified by DCCD
SAXS 散射曲线 SAXS Profile
暂无 SAXS 图
P(r) 距离分布 P(r) Distribution
暂无 P(r) 图
1. 结构基本信息 1. Structure Basics
| 条目编号 entry_id | 2dys |
| 沉积日期 deposition_date | 2006-09-16 |
| 结构标题 title | Bovine heart cytochrome C oxidase modified by DCCD |
| 关键词 keywords | oxidoreductase; OXIDOREDUCTASE |
| 实验方法 method | X-RAY DIFFRACTION |
2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)
该条目暂无 SAXS 数据。
3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)
该条目暂无 P(r) 分析数据。
4. 晶体学与实验 4. Crystallography & Experiment
5. 实体与聚合体信息 (29)
6. 折叠分类 (SCOP + CATH) 58 domains
SCOP 2.08 (28 domains)
| 结构域编号 domain_id | d2dysa_ |
| 类 Class class | f — Membrane and cell surface proteins and peptides |
| 折叠类型 Fold fold | f.24 — Cytochrome c oxidase subunit I-like |
| 超家族 Superfamily superfamily | f.24.1 — Cytochrome c oxidase subunit I-like |
| 家族 Family family | f.24.1.1 — Cytochrome c oxidase subunit I-like |
| 结构域编号 domain_id | d2dysb1 |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.6 — Cupredoxin-like |
| 超家族 Superfamily superfamily | b.6.1 — Cupredoxins |
| 家族 Family family | b.6.1.2 — Periplasmic domain of cytochrome c oxidase subunit II |
| 结构域编号 domain_id | d2dysb2 |
| 类 Class class | f — Membrane and cell surface proteins and peptides |
| 折叠类型 Fold fold | f.17 — Transmembrane helix hairpin |
| 超家族 Superfamily superfamily | f.17.2 — Cytochrome c oxidase subunit II-like, transmembrane region |
| 家族 Family family | f.17.2.1 — Cytochrome c oxidase subunit II-like, transmembrane region |
| 结构域编号 domain_id | d2dysc_ |
| 类 Class class | f — Membrane and cell surface proteins and peptides |
| 折叠类型 Fold fold | f.25 — Cytochrome c oxidase subunit III-like |
| 超家族 Superfamily superfamily | f.25.1 — Cytochrome c oxidase subunit III-like |
| 家族 Family family | f.25.1.1 — Cytochrome c oxidase subunit III-like |
| 结构域编号 domain_id | d2dysd_ |
| 类 Class class | f — Membrane and cell surface proteins and peptides |
| 折叠类型 Fold fold | f.23 — Single transmembrane helix |
| 超家族 Superfamily superfamily | f.23.1 — Mitochondrial cytochrome c oxidase subunit IV |
| 家族 Family family | f.23.1.1 — Mitochondrial cytochrome c oxidase subunit IV |
| 结构域编号 domain_id | d2dyse_ |
| 类 Class class | a — All alpha proteins |
| 折叠类型 Fold fold | a.118 — alpha-alpha superhelix |
| 超家族 Superfamily superfamily | a.118.11 — Cytochrome c oxidase subunit E |
| 家族 Family family | a.118.11.1 — Cytochrome c oxidase subunit E |
| 结构域编号 domain_id | d2dysf_ |
| 类 Class class | g — Small proteins |
| 折叠类型 Fold fold | g.41 — Rubredoxin-like |
| 超家族 Superfamily superfamily | g.41.5 — Rubredoxin-like |
| 家族 Family family | g.41.5.3 — Cytochrome c oxidase Subunit F |
| 结构域编号 domain_id | d2dysg_ |
| 类 Class class | f — Membrane and cell surface proteins and peptides |
| 折叠类型 Fold fold | f.23 — Single transmembrane helix |
| 超家族 Superfamily superfamily | f.23.2 — Mitochondrial cytochrome c oxidase subunit VIa |
| 家族 Family family | f.23.2.1 — Mitochondrial cytochrome c oxidase subunit VIa |
| 结构域编号 domain_id | d2dysh_ |
| 类 Class class | a — All alpha proteins |
| 折叠类型 Fold fold | a.51 — Cytochrome c oxidase subunit h |
| 超家族 Superfamily superfamily | a.51.1 — Cytochrome c oxidase subunit h |
| 家族 Family family | a.51.1.1 — Cytochrome c oxidase subunit h |
| 结构域编号 domain_id | d2dysi_ |
| 类 Class class | f — Membrane and cell surface proteins and peptides |
| 折叠类型 Fold fold | f.23 — Single transmembrane helix |
| 超家族 Superfamily superfamily | f.23.3 — Mitochondrial cytochrome c oxidase subunit VIc |
| 家族 Family family | f.23.3.1 — Mitochondrial cytochrome c oxidase subunit VIc |
| 结构域编号 domain_id | d2dysj_ |
| 类 Class class | f — Membrane and cell surface proteins and peptides |
| 折叠类型 Fold fold | f.23 — Single transmembrane helix |
| 超家族 Superfamily superfamily | f.23.4 — Mitochondrial cytochrome c oxidase subunit VIIa |
| 家族 Family family | f.23.4.1 — Mitochondrial cytochrome c oxidase subunit VIIa |
| 结构域编号 domain_id | d2dysk_ |
| 类 Class class | f — Membrane and cell surface proteins and peptides |
| 折叠类型 Fold fold | f.23 — Single transmembrane helix |
| 超家族 Superfamily superfamily | f.23.5 — Mitochondrial cytochrome c oxidase subunit VIIb |
| 家族 Family family | f.23.5.1 — Mitochondrial cytochrome c oxidase subunit VIIb |
| 结构域编号 domain_id | d2dysl_ |
| 类 Class class | f — Membrane and cell surface proteins and peptides |
| 折叠类型 Fold fold | f.23 — Single transmembrane helix |
| 超家族 Superfamily superfamily | f.23.6 — Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) |
| 家族 Family family | f.23.6.1 — Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) |
| 结构域编号 domain_id | d2dysm_ |
| 类 Class class | f — Membrane and cell surface proteins and peptides |
| 折叠类型 Fold fold | f.23 — Single transmembrane helix |
| 超家族 Superfamily superfamily | f.23.7 — Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) |
| 家族 Family family | f.23.7.1 — Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) |
| 结构域编号 domain_id | d2dysn_ |
| 类 Class class | f — Membrane and cell surface proteins and peptides |
| 折叠类型 Fold fold | f.24 — Cytochrome c oxidase subunit I-like |
| 超家族 Superfamily superfamily | f.24.1 — Cytochrome c oxidase subunit I-like |
| 家族 Family family | f.24.1.1 — Cytochrome c oxidase subunit I-like |
| 结构域编号 domain_id | d2dyso1 |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.6 — Cupredoxin-like |
| 超家族 Superfamily superfamily | b.6.1 — Cupredoxins |
| 家族 Family family | b.6.1.2 — Periplasmic domain of cytochrome c oxidase subunit II |
| 结构域编号 domain_id | d2dyso2 |
| 类 Class class | f — Membrane and cell surface proteins and peptides |
| 折叠类型 Fold fold | f.17 — Transmembrane helix hairpin |
| 超家族 Superfamily superfamily | f.17.2 — Cytochrome c oxidase subunit II-like, transmembrane region |
| 家族 Family family | f.17.2.1 — Cytochrome c oxidase subunit II-like, transmembrane region |
| 结构域编号 domain_id | d2dysp_ |
| 类 Class class | f — Membrane and cell surface proteins and peptides |
| 折叠类型 Fold fold | f.25 — Cytochrome c oxidase subunit III-like |
| 超家族 Superfamily superfamily | f.25.1 — Cytochrome c oxidase subunit III-like |
| 家族 Family family | f.25.1.1 — Cytochrome c oxidase subunit III-like |
| 结构域编号 domain_id | d2dysq_ |
| 类 Class class | f — Membrane and cell surface proteins and peptides |
| 折叠类型 Fold fold | f.23 — Single transmembrane helix |
| 超家族 Superfamily superfamily | f.23.1 — Mitochondrial cytochrome c oxidase subunit IV |
| 家族 Family family | f.23.1.1 — Mitochondrial cytochrome c oxidase subunit IV |
| 结构域编号 domain_id | d2dysr_ |
| 类 Class class | a — All alpha proteins |
| 折叠类型 Fold fold | a.118 — alpha-alpha superhelix |
| 超家族 Superfamily superfamily | a.118.11 — Cytochrome c oxidase subunit E |
| 家族 Family family | a.118.11.1 — Cytochrome c oxidase subunit E |
| 结构域编号 domain_id | d2dyss_ |
| 类 Class class | g — Small proteins |
| 折叠类型 Fold fold | g.41 — Rubredoxin-like |
| 超家族 Superfamily superfamily | g.41.5 — Rubredoxin-like |
| 家族 Family family | g.41.5.3 — Cytochrome c oxidase Subunit F |
| 结构域编号 domain_id | d2dyst_ |
| 类 Class class | f — Membrane and cell surface proteins and peptides |
| 折叠类型 Fold fold | f.23 — Single transmembrane helix |
| 超家族 Superfamily superfamily | f.23.2 — Mitochondrial cytochrome c oxidase subunit VIa |
| 家族 Family family | f.23.2.1 — Mitochondrial cytochrome c oxidase subunit VIa |
| 结构域编号 domain_id | d2dysu_ |
| 类 Class class | a — All alpha proteins |
| 折叠类型 Fold fold | a.51 — Cytochrome c oxidase subunit h |
| 超家族 Superfamily superfamily | a.51.1 — Cytochrome c oxidase subunit h |
| 家族 Family family | a.51.1.1 — Cytochrome c oxidase subunit h |
| 结构域编号 domain_id | d2dysv_ |
| 类 Class class | f — Membrane and cell surface proteins and peptides |
| 折叠类型 Fold fold | f.23 — Single transmembrane helix |
| 超家族 Superfamily superfamily | f.23.3 — Mitochondrial cytochrome c oxidase subunit VIc |
| 家族 Family family | f.23.3.1 — Mitochondrial cytochrome c oxidase subunit VIc |
| 结构域编号 domain_id | d2dysw_ |
| 类 Class class | f — Membrane and cell surface proteins and peptides |
| 折叠类型 Fold fold | f.23 — Single transmembrane helix |
| 超家族 Superfamily superfamily | f.23.4 — Mitochondrial cytochrome c oxidase subunit VIIa |
| 家族 Family family | f.23.4.1 — Mitochondrial cytochrome c oxidase subunit VIIa |
| 结构域编号 domain_id | d2dysx_ |
| 类 Class class | f — Membrane and cell surface proteins and peptides |
| 折叠类型 Fold fold | f.23 — Single transmembrane helix |
| 超家族 Superfamily superfamily | f.23.5 — Mitochondrial cytochrome c oxidase subunit VIIb |
| 家族 Family family | f.23.5.1 — Mitochondrial cytochrome c oxidase subunit VIIb |
| 结构域编号 domain_id | d2dysy_ |
| 类 Class class | f — Membrane and cell surface proteins and peptides |
| 折叠类型 Fold fold | f.23 — Single transmembrane helix |
| 超家族 Superfamily superfamily | f.23.6 — Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) |
| 家族 Family family | f.23.6.1 — Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) |
| 结构域编号 domain_id | d2dysz_ |
| 类 Class class | f — Membrane and cell surface proteins and peptides |
| 折叠类型 Fold fold | f.23 — Single transmembrane helix |
| 超家族 Superfamily superfamily | f.23.7 — Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) |
| 家族 Family family | f.23.7.1 — Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) |
CATH v4.4 (30 domains)
| 结构域编号 domain_id | 2dysA00 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 20 — Up-down Bundle |
| 拓扑 Topology topology | 210 — Cytochrome C Oxidase; Chain A |
| 同源超家族 H-superfamily homologous superfamily | 10 — Cytochrome c oxidase-like, subunit I domain |
| 结构域编号 domain_id | 2dysB01 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 10 — Orthogonal Bundle |
| 拓扑 Topology topology | 287 — Helix Hairpins |
| 同源超家族 H-superfamily homologous superfamily | 90 — |
| 结构域编号 domain_id | 2dysB02 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 420 — Cupredoxins - blue copper proteins |
| 结构域编号 domain_id | 2dysC01 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 10 — Orthogonal Bundle |
| 拓扑 Topology topology | 287 — Helix Hairpins |
| 同源超家族 H-superfamily homologous superfamily | 70 — |
| 结构域编号 domain_id | 2dysC02 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 20 — Up-down Bundle |
| 拓扑 Topology topology | 120 — Four Helix Bundle (Hemerythrin (Met), subunit A) |
| 同源超家族 H-superfamily homologous superfamily | 80 — Cytochrome c oxidase, subunit III, four-helix bundle |
| 结构域编号 domain_id | 2dysD00 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 10 — Orthogonal Bundle |
| 拓扑 Topology topology | 442 — Cytochrome C Oxidase; Chain D |
| 同源超家族 H-superfamily homologous superfamily | 10 — Cytochrome c oxidase subunit IV |
| 结构域编号 domain_id | 2dysE00 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 25 — Alpha Horseshoe |
| 拓扑 Topology topology | 40 — Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat |
| 同源超家族 H-superfamily homologous superfamily | 40 — Cytochrome c oxidase, subunit Va/VI |
| 结构域编号 domain_id | 2dysF00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 11 — Cytochrome C Oxidase; Chain F |
| 同源超家族 H-superfamily homologous superfamily | 10 — Cytochrome c oxidase, subunit Vb |
| 结构域编号 domain_id | 2dysG00 |
| 类 Class class | 4 — Few Secondary Structures |
| 架构 Architecture architecture | 10 — Irregular |
| 拓扑 Topology topology | 95 — Cytochrome C Oxidase; Chain G |
| 同源超家族 H-superfamily homologous superfamily | 10 — Cytochrome c oxidase, subunit VIa |
| 结构域编号 domain_id | 2dysH00 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 10 — Orthogonal Bundle |
| 拓扑 Topology topology | 10 — Arc Repressor Mutant, subunit A |
| 同源超家族 H-superfamily homologous superfamily | 140 — Cytochrome c oxidase, subunit VIb |
| 结构域编号 domain_id | 2dysI00 |
| 类 Class class | 4 — Few Secondary Structures |
| 架构 Architecture architecture | 10 — Irregular |
| 拓扑 Topology topology | 93 — Cytochrome C Oxidase; Chain I |
| 同源超家族 H-superfamily homologous superfamily | 10 — Mitochondrial cytochrome c oxidase subunit VIc/VIIs |
| 结构域编号 domain_id | 2dysJ00 |
| 类 Class class | 4 — Few Secondary Structures |
| 架构 Architecture architecture | 10 — Irregular |
| 拓扑 Topology topology | 91 — Cytochrome C Oxidase; Chain J |
| 同源超家族 H-superfamily homologous superfamily | 10 — Cytochrome c oxidase, subunit VIIa |
| 结构域编号 domain_id | 2dysK00 |
| 类 Class class | 4 — Few Secondary Structures |
| 架构 Architecture architecture | 10 — Irregular |
| 拓扑 Topology topology | 51 — Cytochrome C Oxidase; Chain K |
| 同源超家族 H-superfamily homologous superfamily | 10 — Cytochrome C Oxidase, chain K |
| 结构域编号 domain_id | 2dysL00 |
| 类 Class class | 4 — Few Secondary Structures |
| 架构 Architecture architecture | 10 — Irregular |
| 拓扑 Topology topology | 49 — Cytochrome C Oxidase; Chain L |
| 同源超家族 H-superfamily homologous superfamily | 10 — Cytochrome c oxidase subunit VIIc |
| 结构域编号 domain_id | 2dysM00 |
| 类 Class class | 4 — Few Secondary Structures |
| 架构 Architecture architecture | 10 — Irregular |
| 拓扑 Topology topology | 81 — Cytochrome C Oxidase; Chain M |
| 同源超家族 H-superfamily homologous superfamily | 10 — Cytochrome c oxidase, subunit 8 |
| 结构域编号 domain_id | 2dysN00 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 20 — Up-down Bundle |
| 拓扑 Topology topology | 210 — Cytochrome C Oxidase; Chain A |
| 同源超家族 H-superfamily homologous superfamily | 10 — Cytochrome c oxidase-like, subunit I domain |
| 结构域编号 domain_id | 2dysO01 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 10 — Orthogonal Bundle |
| 拓扑 Topology topology | 287 — Helix Hairpins |
| 同源超家族 H-superfamily homologous superfamily | 90 — |
| 结构域编号 domain_id | 2dysO02 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 420 — Cupredoxins - blue copper proteins |
| 结构域编号 domain_id | 2dysP01 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 10 — Orthogonal Bundle |
| 拓扑 Topology topology | 287 — Helix Hairpins |
| 同源超家族 H-superfamily homologous superfamily | 70 — |
| 结构域编号 domain_id | 2dysP02 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 20 — Up-down Bundle |
| 拓扑 Topology topology | 120 — Four Helix Bundle (Hemerythrin (Met), subunit A) |
| 同源超家族 H-superfamily homologous superfamily | 80 — Cytochrome c oxidase, subunit III, four-helix bundle |
| 结构域编号 domain_id | 2dysQ00 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 10 — Orthogonal Bundle |
| 拓扑 Topology topology | 442 — Cytochrome C Oxidase; Chain D |
| 同源超家族 H-superfamily homologous superfamily | 10 — Cytochrome c oxidase subunit IV |
| 结构域编号 domain_id | 2dysR00 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 25 — Alpha Horseshoe |
| 拓扑 Topology topology | 40 — Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat |
| 同源超家族 H-superfamily homologous superfamily | 40 — Cytochrome c oxidase, subunit Va/VI |
| 结构域编号 domain_id | 2dysS00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 11 — Cytochrome C Oxidase; Chain F |
| 同源超家族 H-superfamily homologous superfamily | 10 — Cytochrome c oxidase, subunit Vb |
| 结构域编号 domain_id | 2dysT00 |
| 类 Class class | 4 — Few Secondary Structures |
| 架构 Architecture architecture | 10 — Irregular |
| 拓扑 Topology topology | 95 — Cytochrome C Oxidase; Chain G |
| 同源超家族 H-superfamily homologous superfamily | 10 — Cytochrome c oxidase, subunit VIa |
| 结构域编号 domain_id | 2dysU00 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 10 — Orthogonal Bundle |
| 拓扑 Topology topology | 10 — Arc Repressor Mutant, subunit A |
| 同源超家族 H-superfamily homologous superfamily | 140 — Cytochrome c oxidase, subunit VIb |
| 结构域编号 domain_id | 2dysV00 |
| 类 Class class | 4 — Few Secondary Structures |
| 架构 Architecture architecture | 10 — Irregular |
| 拓扑 Topology topology | 93 — Cytochrome C Oxidase; Chain I |
| 同源超家族 H-superfamily homologous superfamily | 10 — Mitochondrial cytochrome c oxidase subunit VIc/VIIs |
| 结构域编号 domain_id | 2dysW00 |
| 类 Class class | 4 — Few Secondary Structures |
| 架构 Architecture architecture | 10 — Irregular |
| 拓扑 Topology topology | 91 — Cytochrome C Oxidase; Chain J |
| 同源超家族 H-superfamily homologous superfamily | 10 — Cytochrome c oxidase, subunit VIIa |
| 结构域编号 domain_id | 2dysX00 |
| 类 Class class | 4 — Few Secondary Structures |
| 架构 Architecture architecture | 10 — Irregular |
| 拓扑 Topology topology | 51 — Cytochrome C Oxidase; Chain K |
| 同源超家族 H-superfamily homologous superfamily | 10 — Cytochrome C Oxidase, chain K |
| 结构域编号 domain_id | 2dysY00 |
| 类 Class class | 4 — Few Secondary Structures |
| 架构 Architecture architecture | 10 — Irregular |
| 拓扑 Topology topology | 49 — Cytochrome C Oxidase; Chain L |
| 同源超家族 H-superfamily homologous superfamily | 10 — Cytochrome c oxidase subunit VIIc |
| 结构域编号 domain_id | 2dysZ00 |
| 类 Class class | 4 — Few Secondary Structures |
| 架构 Architecture architecture | 10 — Irregular |
| 拓扑 Topology topology | 81 — Cytochrome C Oxidase; Chain M |
| 同源超家族 H-superfamily homologous superfamily | 10 — Cytochrome c oxidase, subunit 8 |