1v54
Bovine heart cytochrome c oxidase at the fully oxidized state
SAXS 散射曲线 SAXS Profile
暂无 SAXS 图
P(r) 距离分布 P(r) Distribution
暂无 P(r) 图
1. 结构基本信息 1. Structure Basics
| 条目编号 entry_id | 1v54 |
| 沉积日期 deposition_date | 2003-11-21 |
| 结构标题 title | Bovine heart cytochrome c oxidase at the fully oxidized state |
| 关键词 keywords | OXIDOREDUCTASE; OXIDOREDUCTASE |
| 实验方法 method | X-RAY DIFFRACTION |
2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)
该条目暂无 SAXS 数据。
3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)
该条目暂无 P(r) 分析数据。
4. 晶体学与实验 4. Crystallography & Experiment
5. 实体与聚合体信息 (28)
6. 折叠分类 (SCOP + CATH) 58 domains
SCOP 2.08 (28 domains)
| 结构域编号 domain_id | d1v54a_ |
| 类 Class class | f — Membrane and cell surface proteins and peptides |
| 折叠类型 Fold fold | f.24 — Cytochrome c oxidase subunit I-like |
| 超家族 Superfamily superfamily | f.24.1 — Cytochrome c oxidase subunit I-like |
| 家族 Family family | f.24.1.1 — Cytochrome c oxidase subunit I-like |
| 结构域编号 domain_id | d1v54b1 |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.6 — Cupredoxin-like |
| 超家族 Superfamily superfamily | b.6.1 — Cupredoxins |
| 家族 Family family | b.6.1.2 — Periplasmic domain of cytochrome c oxidase subunit II |
| 结构域编号 domain_id | d1v54b2 |
| 类 Class class | f — Membrane and cell surface proteins and peptides |
| 折叠类型 Fold fold | f.17 — Transmembrane helix hairpin |
| 超家族 Superfamily superfamily | f.17.2 — Cytochrome c oxidase subunit II-like, transmembrane region |
| 家族 Family family | f.17.2.1 — Cytochrome c oxidase subunit II-like, transmembrane region |
| 结构域编号 domain_id | d1v54c_ |
| 类 Class class | f — Membrane and cell surface proteins and peptides |
| 折叠类型 Fold fold | f.25 — Cytochrome c oxidase subunit III-like |
| 超家族 Superfamily superfamily | f.25.1 — Cytochrome c oxidase subunit III-like |
| 家族 Family family | f.25.1.1 — Cytochrome c oxidase subunit III-like |
| 结构域编号 domain_id | d1v54d_ |
| 类 Class class | f — Membrane and cell surface proteins and peptides |
| 折叠类型 Fold fold | f.23 — Single transmembrane helix |
| 超家族 Superfamily superfamily | f.23.1 — Mitochondrial cytochrome c oxidase subunit IV |
| 家族 Family family | f.23.1.1 — Mitochondrial cytochrome c oxidase subunit IV |
| 结构域编号 domain_id | d1v54e_ |
| 类 Class class | a — All alpha proteins |
| 折叠类型 Fold fold | a.118 — alpha-alpha superhelix |
| 超家族 Superfamily superfamily | a.118.11 — Cytochrome c oxidase subunit E |
| 家族 Family family | a.118.11.1 — Cytochrome c oxidase subunit E |
| 结构域编号 domain_id | d1v54f_ |
| 类 Class class | g — Small proteins |
| 折叠类型 Fold fold | g.41 — Rubredoxin-like |
| 超家族 Superfamily superfamily | g.41.5 — Rubredoxin-like |
| 家族 Family family | g.41.5.3 — Cytochrome c oxidase Subunit F |
| 结构域编号 domain_id | d1v54g_ |
| 类 Class class | f — Membrane and cell surface proteins and peptides |
| 折叠类型 Fold fold | f.23 — Single transmembrane helix |
| 超家族 Superfamily superfamily | f.23.2 — Mitochondrial cytochrome c oxidase subunit VIa |
| 家族 Family family | f.23.2.1 — Mitochondrial cytochrome c oxidase subunit VIa |
| 结构域编号 domain_id | d1v54h_ |
| 类 Class class | a — All alpha proteins |
| 折叠类型 Fold fold | a.51 — Cytochrome c oxidase subunit h |
| 超家族 Superfamily superfamily | a.51.1 — Cytochrome c oxidase subunit h |
| 家族 Family family | a.51.1.1 — Cytochrome c oxidase subunit h |
| 结构域编号 domain_id | d1v54i_ |
| 类 Class class | f — Membrane and cell surface proteins and peptides |
| 折叠类型 Fold fold | f.23 — Single transmembrane helix |
| 超家族 Superfamily superfamily | f.23.3 — Mitochondrial cytochrome c oxidase subunit VIc |
| 家族 Family family | f.23.3.1 — Mitochondrial cytochrome c oxidase subunit VIc |
| 结构域编号 domain_id | d1v54j_ |
| 类 Class class | f — Membrane and cell surface proteins and peptides |
| 折叠类型 Fold fold | f.23 — Single transmembrane helix |
| 超家族 Superfamily superfamily | f.23.4 — Mitochondrial cytochrome c oxidase subunit VIIa |
| 家族 Family family | f.23.4.1 — Mitochondrial cytochrome c oxidase subunit VIIa |
| 结构域编号 domain_id | d1v54k_ |
| 类 Class class | f — Membrane and cell surface proteins and peptides |
| 折叠类型 Fold fold | f.23 — Single transmembrane helix |
| 超家族 Superfamily superfamily | f.23.5 — Mitochondrial cytochrome c oxidase subunit VIIb |
| 家族 Family family | f.23.5.1 — Mitochondrial cytochrome c oxidase subunit VIIb |
| 结构域编号 domain_id | d1v54l_ |
| 类 Class class | f — Membrane and cell surface proteins and peptides |
| 折叠类型 Fold fold | f.23 — Single transmembrane helix |
| 超家族 Superfamily superfamily | f.23.6 — Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) |
| 家族 Family family | f.23.6.1 — Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) |
| 结构域编号 domain_id | d1v54m_ |
| 类 Class class | f — Membrane and cell surface proteins and peptides |
| 折叠类型 Fold fold | f.23 — Single transmembrane helix |
| 超家族 Superfamily superfamily | f.23.7 — Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) |
| 家族 Family family | f.23.7.1 — Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) |
| 结构域编号 domain_id | d1v54n_ |
| 类 Class class | f — Membrane and cell surface proteins and peptides |
| 折叠类型 Fold fold | f.24 — Cytochrome c oxidase subunit I-like |
| 超家族 Superfamily superfamily | f.24.1 — Cytochrome c oxidase subunit I-like |
| 家族 Family family | f.24.1.1 — Cytochrome c oxidase subunit I-like |
| 结构域编号 domain_id | d1v54o1 |
| 类 Class class | b — All beta proteins |
| 折叠类型 Fold fold | b.6 — Cupredoxin-like |
| 超家族 Superfamily superfamily | b.6.1 — Cupredoxins |
| 家族 Family family | b.6.1.2 — Periplasmic domain of cytochrome c oxidase subunit II |
| 结构域编号 domain_id | d1v54o2 |
| 类 Class class | f — Membrane and cell surface proteins and peptides |
| 折叠类型 Fold fold | f.17 — Transmembrane helix hairpin |
| 超家族 Superfamily superfamily | f.17.2 — Cytochrome c oxidase subunit II-like, transmembrane region |
| 家族 Family family | f.17.2.1 — Cytochrome c oxidase subunit II-like, transmembrane region |
| 结构域编号 domain_id | d1v54p_ |
| 类 Class class | f — Membrane and cell surface proteins and peptides |
| 折叠类型 Fold fold | f.25 — Cytochrome c oxidase subunit III-like |
| 超家族 Superfamily superfamily | f.25.1 — Cytochrome c oxidase subunit III-like |
| 家族 Family family | f.25.1.1 — Cytochrome c oxidase subunit III-like |
| 结构域编号 domain_id | d1v54q_ |
| 类 Class class | f — Membrane and cell surface proteins and peptides |
| 折叠类型 Fold fold | f.23 — Single transmembrane helix |
| 超家族 Superfamily superfamily | f.23.1 — Mitochondrial cytochrome c oxidase subunit IV |
| 家族 Family family | f.23.1.1 — Mitochondrial cytochrome c oxidase subunit IV |
| 结构域编号 domain_id | d1v54r_ |
| 类 Class class | a — All alpha proteins |
| 折叠类型 Fold fold | a.118 — alpha-alpha superhelix |
| 超家族 Superfamily superfamily | a.118.11 — Cytochrome c oxidase subunit E |
| 家族 Family family | a.118.11.1 — Cytochrome c oxidase subunit E |
| 结构域编号 domain_id | d1v54s_ |
| 类 Class class | g — Small proteins |
| 折叠类型 Fold fold | g.41 — Rubredoxin-like |
| 超家族 Superfamily superfamily | g.41.5 — Rubredoxin-like |
| 家族 Family family | g.41.5.3 — Cytochrome c oxidase Subunit F |
| 结构域编号 domain_id | d1v54t_ |
| 类 Class class | f — Membrane and cell surface proteins and peptides |
| 折叠类型 Fold fold | f.23 — Single transmembrane helix |
| 超家族 Superfamily superfamily | f.23.2 — Mitochondrial cytochrome c oxidase subunit VIa |
| 家族 Family family | f.23.2.1 — Mitochondrial cytochrome c oxidase subunit VIa |
| 结构域编号 domain_id | d1v54u_ |
| 类 Class class | a — All alpha proteins |
| 折叠类型 Fold fold | a.51 — Cytochrome c oxidase subunit h |
| 超家族 Superfamily superfamily | a.51.1 — Cytochrome c oxidase subunit h |
| 家族 Family family | a.51.1.1 — Cytochrome c oxidase subunit h |
| 结构域编号 domain_id | d1v54v_ |
| 类 Class class | f — Membrane and cell surface proteins and peptides |
| 折叠类型 Fold fold | f.23 — Single transmembrane helix |
| 超家族 Superfamily superfamily | f.23.3 — Mitochondrial cytochrome c oxidase subunit VIc |
| 家族 Family family | f.23.3.1 — Mitochondrial cytochrome c oxidase subunit VIc |
| 结构域编号 domain_id | d1v54w_ |
| 类 Class class | f — Membrane and cell surface proteins and peptides |
| 折叠类型 Fold fold | f.23 — Single transmembrane helix |
| 超家族 Superfamily superfamily | f.23.4 — Mitochondrial cytochrome c oxidase subunit VIIa |
| 家族 Family family | f.23.4.1 — Mitochondrial cytochrome c oxidase subunit VIIa |
| 结构域编号 domain_id | d1v54x_ |
| 类 Class class | f — Membrane and cell surface proteins and peptides |
| 折叠类型 Fold fold | f.23 — Single transmembrane helix |
| 超家族 Superfamily superfamily | f.23.5 — Mitochondrial cytochrome c oxidase subunit VIIb |
| 家族 Family family | f.23.5.1 — Mitochondrial cytochrome c oxidase subunit VIIb |
| 结构域编号 domain_id | d1v54y_ |
| 类 Class class | f — Membrane and cell surface proteins and peptides |
| 折叠类型 Fold fold | f.23 — Single transmembrane helix |
| 超家族 Superfamily superfamily | f.23.6 — Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) |
| 家族 Family family | f.23.6.1 — Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) |
| 结构域编号 domain_id | d1v54z_ |
| 类 Class class | f — Membrane and cell surface proteins and peptides |
| 折叠类型 Fold fold | f.23 — Single transmembrane helix |
| 超家族 Superfamily superfamily | f.23.7 — Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) |
| 家族 Family family | f.23.7.1 — Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) |
CATH v4.4 (30 domains)
| 结构域编号 domain_id | 1v54A00 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 20 — Up-down Bundle |
| 拓扑 Topology topology | 210 — Cytochrome C Oxidase; Chain A |
| 同源超家族 H-superfamily homologous superfamily | 10 — Cytochrome c oxidase-like, subunit I domain |
| 结构域编号 domain_id | 1v54B01 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 10 — Orthogonal Bundle |
| 拓扑 Topology topology | 287 — Helix Hairpins |
| 同源超家族 H-superfamily homologous superfamily | 90 — |
| 结构域编号 domain_id | 1v54B02 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 420 — Cupredoxins - blue copper proteins |
| 结构域编号 domain_id | 1v54C01 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 10 — Orthogonal Bundle |
| 拓扑 Topology topology | 287 — Helix Hairpins |
| 同源超家族 H-superfamily homologous superfamily | 70 — |
| 结构域编号 domain_id | 1v54C02 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 20 — Up-down Bundle |
| 拓扑 Topology topology | 120 — Four Helix Bundle (Hemerythrin (Met), subunit A) |
| 同源超家族 H-superfamily homologous superfamily | 80 — Cytochrome c oxidase, subunit III, four-helix bundle |
| 结构域编号 domain_id | 1v54D00 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 10 — Orthogonal Bundle |
| 拓扑 Topology topology | 442 — Cytochrome C Oxidase; Chain D |
| 同源超家族 H-superfamily homologous superfamily | 10 — Cytochrome c oxidase subunit IV |
| 结构域编号 domain_id | 1v54E00 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 25 — Alpha Horseshoe |
| 拓扑 Topology topology | 40 — Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat |
| 同源超家族 H-superfamily homologous superfamily | 40 — Cytochrome c oxidase, subunit Va/VI |
| 结构域编号 domain_id | 1v54F00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 11 — Cytochrome C Oxidase; Chain F |
| 同源超家族 H-superfamily homologous superfamily | 10 — Cytochrome c oxidase, subunit Vb |
| 结构域编号 domain_id | 1v54G00 |
| 类 Class class | 4 — Few Secondary Structures |
| 架构 Architecture architecture | 10 — Irregular |
| 拓扑 Topology topology | 95 — Cytochrome C Oxidase; Chain G |
| 同源超家族 H-superfamily homologous superfamily | 10 — Cytochrome c oxidase, subunit VIa |
| 结构域编号 domain_id | 1v54H00 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 10 — Orthogonal Bundle |
| 拓扑 Topology topology | 10 — Arc Repressor Mutant, subunit A |
| 同源超家族 H-superfamily homologous superfamily | 140 — Cytochrome c oxidase, subunit VIb |
| 结构域编号 domain_id | 1v54I00 |
| 类 Class class | 4 — Few Secondary Structures |
| 架构 Architecture architecture | 10 — Irregular |
| 拓扑 Topology topology | 93 — Cytochrome C Oxidase; Chain I |
| 同源超家族 H-superfamily homologous superfamily | 10 — Mitochondrial cytochrome c oxidase subunit VIc/VIIs |
| 结构域编号 domain_id | 1v54J00 |
| 类 Class class | 4 — Few Secondary Structures |
| 架构 Architecture architecture | 10 — Irregular |
| 拓扑 Topology topology | 91 — Cytochrome C Oxidase; Chain J |
| 同源超家族 H-superfamily homologous superfamily | 10 — Cytochrome c oxidase, subunit VIIa |
| 结构域编号 domain_id | 1v54K00 |
| 类 Class class | 4 — Few Secondary Structures |
| 架构 Architecture architecture | 10 — Irregular |
| 拓扑 Topology topology | 51 — Cytochrome C Oxidase; Chain K |
| 同源超家族 H-superfamily homologous superfamily | 10 — Cytochrome C Oxidase, chain K |
| 结构域编号 domain_id | 1v54L00 |
| 类 Class class | 4 — Few Secondary Structures |
| 架构 Architecture architecture | 10 — Irregular |
| 拓扑 Topology topology | 49 — Cytochrome C Oxidase; Chain L |
| 同源超家族 H-superfamily homologous superfamily | 10 — Cytochrome c oxidase subunit VIIc |
| 结构域编号 domain_id | 1v54M00 |
| 类 Class class | 4 — Few Secondary Structures |
| 架构 Architecture architecture | 10 — Irregular |
| 拓扑 Topology topology | 81 — Cytochrome C Oxidase; Chain M |
| 同源超家族 H-superfamily homologous superfamily | 10 — Cytochrome c oxidase, subunit 8 |
| 结构域编号 domain_id | 1v54N00 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 20 — Up-down Bundle |
| 拓扑 Topology topology | 210 — Cytochrome C Oxidase; Chain A |
| 同源超家族 H-superfamily homologous superfamily | 10 — Cytochrome c oxidase-like, subunit I domain |
| 结构域编号 domain_id | 1v54O01 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 10 — Orthogonal Bundle |
| 拓扑 Topology topology | 287 — Helix Hairpins |
| 同源超家族 H-superfamily homologous superfamily | 90 — |
| 结构域编号 domain_id | 1v54O02 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 40 — Immunoglobulin-like |
| 同源超家族 H-superfamily homologous superfamily | 420 — Cupredoxins - blue copper proteins |
| 结构域编号 domain_id | 1v54P01 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 10 — Orthogonal Bundle |
| 拓扑 Topology topology | 287 — Helix Hairpins |
| 同源超家族 H-superfamily homologous superfamily | 70 — |
| 结构域编号 domain_id | 1v54P02 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 20 — Up-down Bundle |
| 拓扑 Topology topology | 120 — Four Helix Bundle (Hemerythrin (Met), subunit A) |
| 同源超家族 H-superfamily homologous superfamily | 80 — Cytochrome c oxidase, subunit III, four-helix bundle |
| 结构域编号 domain_id | 1v54Q00 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 10 — Orthogonal Bundle |
| 拓扑 Topology topology | 442 — Cytochrome C Oxidase; Chain D |
| 同源超家族 H-superfamily homologous superfamily | 10 — Cytochrome c oxidase subunit IV |
| 结构域编号 domain_id | 1v54R00 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 25 — Alpha Horseshoe |
| 拓扑 Topology topology | 40 — Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat |
| 同源超家族 H-superfamily homologous superfamily | 40 — Cytochrome c oxidase, subunit Va/VI |
| 结构域编号 domain_id | 1v54S00 |
| 类 Class class | 2 — Mainly Beta |
| 架构 Architecture architecture | 60 — Sandwich |
| 拓扑 Topology topology | 11 — Cytochrome C Oxidase; Chain F |
| 同源超家族 H-superfamily homologous superfamily | 10 — Cytochrome c oxidase, subunit Vb |
| 结构域编号 domain_id | 1v54T00 |
| 类 Class class | 4 — Few Secondary Structures |
| 架构 Architecture architecture | 10 — Irregular |
| 拓扑 Topology topology | 95 — Cytochrome C Oxidase; Chain G |
| 同源超家族 H-superfamily homologous superfamily | 10 — Cytochrome c oxidase, subunit VIa |
| 结构域编号 domain_id | 1v54U00 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 10 — Orthogonal Bundle |
| 拓扑 Topology topology | 10 — Arc Repressor Mutant, subunit A |
| 同源超家族 H-superfamily homologous superfamily | 140 — Cytochrome c oxidase, subunit VIb |
| 结构域编号 domain_id | 1v54V00 |
| 类 Class class | 4 — Few Secondary Structures |
| 架构 Architecture architecture | 10 — Irregular |
| 拓扑 Topology topology | 93 — Cytochrome C Oxidase; Chain I |
| 同源超家族 H-superfamily homologous superfamily | 10 — Mitochondrial cytochrome c oxidase subunit VIc/VIIs |
| 结构域编号 domain_id | 1v54W00 |
| 类 Class class | 4 — Few Secondary Structures |
| 架构 Architecture architecture | 10 — Irregular |
| 拓扑 Topology topology | 91 — Cytochrome C Oxidase; Chain J |
| 同源超家族 H-superfamily homologous superfamily | 10 — Cytochrome c oxidase, subunit VIIa |
| 结构域编号 domain_id | 1v54X00 |
| 类 Class class | 4 — Few Secondary Structures |
| 架构 Architecture architecture | 10 — Irregular |
| 拓扑 Topology topology | 51 — Cytochrome C Oxidase; Chain K |
| 同源超家族 H-superfamily homologous superfamily | 10 — Cytochrome C Oxidase, chain K |
| 结构域编号 domain_id | 1v54Y00 |
| 类 Class class | 4 — Few Secondary Structures |
| 架构 Architecture architecture | 10 — Irregular |
| 拓扑 Topology topology | 49 — Cytochrome C Oxidase; Chain L |
| 同源超家族 H-superfamily homologous superfamily | 10 — Cytochrome c oxidase subunit VIIc |
| 结构域编号 domain_id | 1v54Z00 |
| 类 Class class | 4 — Few Secondary Structures |
| 架构 Architecture architecture | 10 — Irregular |
| 拓扑 Topology topology | 81 — Cytochrome C Oxidase; Chain M |
| 同源超家族 H-superfamily homologous superfamily | 10 — Cytochrome c oxidase, subunit 8 |