5z85

The structure of azide-bound cytochrome c oxidase determined using the another batch crystals exposed to 20 mM azide solution for 2 days

Method: X-RAY DIFFRACTION
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Cytochrome c oxidase subunit 1

OrganismNot specified

UniProt P00396

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 13 Cytochrome c oxidase subunit 2 × 1 (P68530) Cytochrome c oxidase subunit 3 × 1 (P00415) Cytochrome c oxidase subunit 4 isoform 1, mitochondrial × 1 (P00423) Cytochrome c oxidase subunit 5A, mitochondrial × 1 (P00426) Cytochrome c oxidase subunit 5B, mitochondrial × 1 (P00428) Cytochrome c oxidase subunit 6A2, mitochondrial × 1 (P07471) Cytochrome c oxidase subunit 6B1 × 1 (P00429) Cytochrome c oxidase subunit 6C × 1 (P04038) Cytochrome c oxidase subunit 7A1, mitochondrial × 1 (P07470) Cytochrome c oxidase subunit 7B, mitochondrial × 1 (P13183) Cytochrome c oxidase subunit 7C, mitochondrial × 1 (P00430) Cytochrome c oxidase subunit 8B, mitochondrial × 1 (P10175) HEME-A × 2 COPPER (II) ION × 1 MAGNESIUM ION × 1 SODIUM ION × 1 AZIDE ION × 2 TRISTEAROYLGLYCEROL × 3 (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE × 4 1,2-ETHANEDIOL × 37 DINUCLEAR COPPER ION × 1 (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE × 1 CHOLIC ACID × 3 DECYL-BETA-D-MALTOPYRANOSIDE × 4 UNKNOWN ATOM OR ION × 1 CARDIOLIPIN × 2 (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE × 3 ZINC ION × 1 water × 13 Consistent with protein count
2 Protein heterocomplex Heteromer Protein 13 Cytochrome c oxidase subunit 2 × 1 (P68530) Cytochrome c oxidase subunit 3 × 1 (P00415) Cytochrome c oxidase subunit 4 isoform 1, mitochondrial × 1 (P00423) Cytochrome c oxidase subunit 5A, mitochondrial × 1 (P00426) Cytochrome c oxidase subunit 5B, mitochondrial × 1 (P00428) Cytochrome c oxidase subunit 6A2, mitochondrial × 1 (P07471) Cytochrome c oxidase subunit 6B1 × 1 (P00429) Cytochrome c oxidase subunit 6C × 1 (P04038) Cytochrome c oxidase subunit 7A1, mitochondrial × 1 (P07470) Cytochrome c oxidase subunit 7B, mitochondrial × 1 (P13183) Cytochrome c oxidase subunit 7C, mitochondrial × 1 (P00430) Cytochrome c oxidase subunit 8B, mitochondrial × 1 (P10175) HEME-A × 2 COPPER (II) ION × 1 MAGNESIUM ION × 1 SODIUM ION × 1 AZIDE ION × 2 TRISTEAROYLGLYCEROL × 3 (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE × 4 1,2-ETHANEDIOL × 32 DINUCLEAR COPPER ION × 1 (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE × 1 CHOLIC ACID × 3 DECYL-BETA-D-MALTOPYRANOSIDE × 4 UNKNOWN ATOM OR ION × 1 CARDIOLIPIN × 2 (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE × 3 ZINC ION × 1 water × 13 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name COX1_BOVIN
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–514; UniProt 1–514 Author chain N; PDBConstruct 1–514; UniProt 1–514

Cytochrome c oxidase subunit 2

OrganismNot specified

UniProt P68530

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 13 Cytochrome c oxidase subunit 1 × 1 (P00396) Cytochrome c oxidase subunit 3 × 1 (P00415) Cytochrome c oxidase subunit 4 isoform 1, mitochondrial × 1 (P00423) Cytochrome c oxidase subunit 5A, mitochondrial × 1 (P00426) Cytochrome c oxidase subunit 5B, mitochondrial × 1 (P00428) Cytochrome c oxidase subunit 6A2, mitochondrial × 1 (P07471) Cytochrome c oxidase subunit 6B1 × 1 (P00429) Cytochrome c oxidase subunit 6C × 1 (P04038) Cytochrome c oxidase subunit 7A1, mitochondrial × 1 (P07470) Cytochrome c oxidase subunit 7B, mitochondrial × 1 (P13183) Cytochrome c oxidase subunit 7C, mitochondrial × 1 (P00430) Cytochrome c oxidase subunit 8B, mitochondrial × 1 (P10175) HEME-A × 2 COPPER (II) ION × 1 MAGNESIUM ION × 1 SODIUM ION × 1 AZIDE ION × 2 TRISTEAROYLGLYCEROL × 3 (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE × 4 1,2-ETHANEDIOL × 37 DINUCLEAR COPPER ION × 1 (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE × 1 CHOLIC ACID × 3 DECYL-BETA-D-MALTOPYRANOSIDE × 4 UNKNOWN ATOM OR ION × 1 CARDIOLIPIN × 2 (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE × 3 ZINC ION × 1 water × 13 Consistent with protein count
2 Protein heterocomplex Heteromer Protein 13 Cytochrome c oxidase subunit 1 × 1 (P00396) Cytochrome c oxidase subunit 3 × 1 (P00415) Cytochrome c oxidase subunit 4 isoform 1, mitochondrial × 1 (P00423) Cytochrome c oxidase subunit 5A, mitochondrial × 1 (P00426) Cytochrome c oxidase subunit 5B, mitochondrial × 1 (P00428) Cytochrome c oxidase subunit 6A2, mitochondrial × 1 (P07471) Cytochrome c oxidase subunit 6B1 × 1 (P00429) Cytochrome c oxidase subunit 6C × 1 (P04038) Cytochrome c oxidase subunit 7A1, mitochondrial × 1 (P07470) Cytochrome c oxidase subunit 7B, mitochondrial × 1 (P13183) Cytochrome c oxidase subunit 7C, mitochondrial × 1 (P00430) Cytochrome c oxidase subunit 8B, mitochondrial × 1 (P10175) HEME-A × 2 COPPER (II) ION × 1 MAGNESIUM ION × 1 SODIUM ION × 1 AZIDE ION × 2 TRISTEAROYLGLYCEROL × 3 (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE × 4 1,2-ETHANEDIOL × 32 DINUCLEAR COPPER ION × 1 (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE × 1 CHOLIC ACID × 3 DECYL-BETA-D-MALTOPYRANOSIDE × 4 UNKNOWN ATOM OR ION × 1 CARDIOLIPIN × 2 (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE × 3 ZINC ION × 1 water × 13 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name COX2_BOVIN
Isoform —
PDB entities 2
Chains and sequence ranges Author chain B; PDBConstruct 1–227; UniProt 1–227 Author chain O; PDBConstruct 1–227; UniProt 1–227

Cytochrome c oxidase subunit 3

OrganismNot specified

UniProt P00415

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 13 Cytochrome c oxidase subunit 1 × 1 (P00396) Cytochrome c oxidase subunit 2 × 1 (P68530) Cytochrome c oxidase subunit 4 isoform 1, mitochondrial × 1 (P00423) Cytochrome c oxidase subunit 5A, mitochondrial × 1 (P00426) Cytochrome c oxidase subunit 5B, mitochondrial × 1 (P00428) Cytochrome c oxidase subunit 6A2, mitochondrial × 1 (P07471) Cytochrome c oxidase subunit 6B1 × 1 (P00429) Cytochrome c oxidase subunit 6C × 1 (P04038) Cytochrome c oxidase subunit 7A1, mitochondrial × 1 (P07470) Cytochrome c oxidase subunit 7B, mitochondrial × 1 (P13183) Cytochrome c oxidase subunit 7C, mitochondrial × 1 (P00430) Cytochrome c oxidase subunit 8B, mitochondrial × 1 (P10175) HEME-A × 2 COPPER (II) ION × 1 MAGNESIUM ION × 1 SODIUM ION × 1 AZIDE ION × 2 TRISTEAROYLGLYCEROL × 3 (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE × 4 1,2-ETHANEDIOL × 37 DINUCLEAR COPPER ION × 1 (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE × 1 CHOLIC ACID × 3 DECYL-BETA-D-MALTOPYRANOSIDE × 4 UNKNOWN ATOM OR ION × 1 CARDIOLIPIN × 2 (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE × 3 ZINC ION × 1 water × 13 Consistent with protein count
2 Protein heterocomplex Heteromer Protein 13 Cytochrome c oxidase subunit 1 × 1 (P00396) Cytochrome c oxidase subunit 2 × 1 (P68530) Cytochrome c oxidase subunit 4 isoform 1, mitochondrial × 1 (P00423) Cytochrome c oxidase subunit 5A, mitochondrial × 1 (P00426) Cytochrome c oxidase subunit 5B, mitochondrial × 1 (P00428) Cytochrome c oxidase subunit 6A2, mitochondrial × 1 (P07471) Cytochrome c oxidase subunit 6B1 × 1 (P00429) Cytochrome c oxidase subunit 6C × 1 (P04038) Cytochrome c oxidase subunit 7A1, mitochondrial × 1 (P07470) Cytochrome c oxidase subunit 7B, mitochondrial × 1 (P13183) Cytochrome c oxidase subunit 7C, mitochondrial × 1 (P00430) Cytochrome c oxidase subunit 8B, mitochondrial × 1 (P10175) HEME-A × 2 COPPER (II) ION × 1 MAGNESIUM ION × 1 SODIUM ION × 1 AZIDE ION × 2 TRISTEAROYLGLYCEROL × 3 (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE × 4 1,2-ETHANEDIOL × 32 DINUCLEAR COPPER ION × 1 (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE × 1 CHOLIC ACID × 3 DECYL-BETA-D-MALTOPYRANOSIDE × 4 UNKNOWN ATOM OR ION × 1 CARDIOLIPIN × 2 (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE × 3 ZINC ION × 1 water × 13 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name COX3_BOVIN
Isoform —
PDB entities 3
Chains and sequence ranges Author chain C; PDBConstruct 1–261; UniProt 1–261 Author chain P; PDBConstruct 1–261; UniProt 1–261

Cytochrome c oxidase subunit 4 isoform 1, mitochondrial

OrganismNot specified

UniProt P00423

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 13 Cytochrome c oxidase subunit 1 × 1 (P00396) Cytochrome c oxidase subunit 2 × 1 (P68530) Cytochrome c oxidase subunit 3 × 1 (P00415) Cytochrome c oxidase subunit 5A, mitochondrial × 1 (P00426) Cytochrome c oxidase subunit 5B, mitochondrial × 1 (P00428) Cytochrome c oxidase subunit 6A2, mitochondrial × 1 (P07471) Cytochrome c oxidase subunit 6B1 × 1 (P00429) Cytochrome c oxidase subunit 6C × 1 (P04038) Cytochrome c oxidase subunit 7A1, mitochondrial × 1 (P07470) Cytochrome c oxidase subunit 7B, mitochondrial × 1 (P13183) Cytochrome c oxidase subunit 7C, mitochondrial × 1 (P00430) Cytochrome c oxidase subunit 8B, mitochondrial × 1 (P10175) HEME-A × 2 COPPER (II) ION × 1 MAGNESIUM ION × 1 SODIUM ION × 1 AZIDE ION × 2 TRISTEAROYLGLYCEROL × 3 (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE × 4 1,2-ETHANEDIOL × 37 DINUCLEAR COPPER ION × 1 (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE × 1 CHOLIC ACID × 3 DECYL-BETA-D-MALTOPYRANOSIDE × 4 UNKNOWN ATOM OR ION × 1 CARDIOLIPIN × 2 (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE × 3 ZINC ION × 1 water × 13 Consistent with protein count
2 Protein heterocomplex Heteromer Protein 13 Cytochrome c oxidase subunit 1 × 1 (P00396) Cytochrome c oxidase subunit 2 × 1 (P68530) Cytochrome c oxidase subunit 3 × 1 (P00415) Cytochrome c oxidase subunit 5A, mitochondrial × 1 (P00426) Cytochrome c oxidase subunit 5B, mitochondrial × 1 (P00428) Cytochrome c oxidase subunit 6A2, mitochondrial × 1 (P07471) Cytochrome c oxidase subunit 6B1 × 1 (P00429) Cytochrome c oxidase subunit 6C × 1 (P04038) Cytochrome c oxidase subunit 7A1, mitochondrial × 1 (P07470) Cytochrome c oxidase subunit 7B, mitochondrial × 1 (P13183) Cytochrome c oxidase subunit 7C, mitochondrial × 1 (P00430) Cytochrome c oxidase subunit 8B, mitochondrial × 1 (P10175) HEME-A × 2 COPPER (II) ION × 1 MAGNESIUM ION × 1 SODIUM ION × 1 AZIDE ION × 2 TRISTEAROYLGLYCEROL × 3 (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE × 4 1,2-ETHANEDIOL × 32 DINUCLEAR COPPER ION × 1 (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE × 1 CHOLIC ACID × 3 DECYL-BETA-D-MALTOPYRANOSIDE × 4 UNKNOWN ATOM OR ION × 1 CARDIOLIPIN × 2 (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE × 3 ZINC ION × 1 water × 13 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name COX41_BOVIN
Isoform —
PDB entities 4
Chains and sequence ranges Author chain D; PDBConstruct 1–147; UniProt 23–169 Author chain Q; PDBConstruct 1–147; UniProt 23–169

Cytochrome c oxidase subunit 5A, mitochondrial

OrganismNot specified

UniProt P00426

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 13 Cytochrome c oxidase subunit 1 × 1 (P00396) Cytochrome c oxidase subunit 2 × 1 (P68530) Cytochrome c oxidase subunit 3 × 1 (P00415) Cytochrome c oxidase subunit 4 isoform 1, mitochondrial × 1 (P00423) Cytochrome c oxidase subunit 5B, mitochondrial × 1 (P00428) Cytochrome c oxidase subunit 6A2, mitochondrial × 1 (P07471) Cytochrome c oxidase subunit 6B1 × 1 (P00429) Cytochrome c oxidase subunit 6C × 1 (P04038) Cytochrome c oxidase subunit 7A1, mitochondrial × 1 (P07470) Cytochrome c oxidase subunit 7B, mitochondrial × 1 (P13183) Cytochrome c oxidase subunit 7C, mitochondrial × 1 (P00430) Cytochrome c oxidase subunit 8B, mitochondrial × 1 (P10175) HEME-A × 2 COPPER (II) ION × 1 MAGNESIUM ION × 1 SODIUM ION × 1 AZIDE ION × 2 TRISTEAROYLGLYCEROL × 3 (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE × 4 1,2-ETHANEDIOL × 37 DINUCLEAR COPPER ION × 1 (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE × 1 CHOLIC ACID × 3 DECYL-BETA-D-MALTOPYRANOSIDE × 4 UNKNOWN ATOM OR ION × 1 CARDIOLIPIN × 2 (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE × 3 ZINC ION × 1 water × 13 Consistent with protein count
2 Protein heterocomplex Heteromer Protein 13 Cytochrome c oxidase subunit 1 × 1 (P00396) Cytochrome c oxidase subunit 2 × 1 (P68530) Cytochrome c oxidase subunit 3 × 1 (P00415) Cytochrome c oxidase subunit 4 isoform 1, mitochondrial × 1 (P00423) Cytochrome c oxidase subunit 5B, mitochondrial × 1 (P00428) Cytochrome c oxidase subunit 6A2, mitochondrial × 1 (P07471) Cytochrome c oxidase subunit 6B1 × 1 (P00429) Cytochrome c oxidase subunit 6C × 1 (P04038) Cytochrome c oxidase subunit 7A1, mitochondrial × 1 (P07470) Cytochrome c oxidase subunit 7B, mitochondrial × 1 (P13183) Cytochrome c oxidase subunit 7C, mitochondrial × 1 (P00430) Cytochrome c oxidase subunit 8B, mitochondrial × 1 (P10175) HEME-A × 2 COPPER (II) ION × 1 MAGNESIUM ION × 1 SODIUM ION × 1 AZIDE ION × 2 TRISTEAROYLGLYCEROL × 3 (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE × 4 1,2-ETHANEDIOL × 32 DINUCLEAR COPPER ION × 1 (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE × 1 CHOLIC ACID × 3 DECYL-BETA-D-MALTOPYRANOSIDE × 4 UNKNOWN ATOM OR ION × 1 CARDIOLIPIN × 2 (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE × 3 ZINC ION × 1 water × 13 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name COX5A_BOVIN
Isoform —
PDB entities 5
Chains and sequence ranges Author chain E; PDBConstruct 1–109; UniProt 44–152 Author chain R; PDBConstruct 1–109; UniProt 44–152

Cytochrome c oxidase subunit 5B, mitochondrial

OrganismNot specified

UniProt P00428

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 13 Cytochrome c oxidase subunit 1 × 1 (P00396) Cytochrome c oxidase subunit 2 × 1 (P68530) Cytochrome c oxidase subunit 3 × 1 (P00415) Cytochrome c oxidase subunit 4 isoform 1, mitochondrial × 1 (P00423) Cytochrome c oxidase subunit 5A, mitochondrial × 1 (P00426) Cytochrome c oxidase subunit 6A2, mitochondrial × 1 (P07471) Cytochrome c oxidase subunit 6B1 × 1 (P00429) Cytochrome c oxidase subunit 6C × 1 (P04038) Cytochrome c oxidase subunit 7A1, mitochondrial × 1 (P07470) Cytochrome c oxidase subunit 7B, mitochondrial × 1 (P13183) Cytochrome c oxidase subunit 7C, mitochondrial × 1 (P00430) Cytochrome c oxidase subunit 8B, mitochondrial × 1 (P10175) HEME-A × 2 COPPER (II) ION × 1 MAGNESIUM ION × 1 SODIUM ION × 1 AZIDE ION × 2 TRISTEAROYLGLYCEROL × 3 (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE × 4 1,2-ETHANEDIOL × 37 DINUCLEAR COPPER ION × 1 (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE × 1 CHOLIC ACID × 3 DECYL-BETA-D-MALTOPYRANOSIDE × 4 UNKNOWN ATOM OR ION × 1 CARDIOLIPIN × 2 (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE × 3 ZINC ION × 1 water × 13 Consistent with protein count
2 Protein heterocomplex Heteromer Protein 13 Cytochrome c oxidase subunit 1 × 1 (P00396) Cytochrome c oxidase subunit 2 × 1 (P68530) Cytochrome c oxidase subunit 3 × 1 (P00415) Cytochrome c oxidase subunit 4 isoform 1, mitochondrial × 1 (P00423) Cytochrome c oxidase subunit 5A, mitochondrial × 1 (P00426) Cytochrome c oxidase subunit 6A2, mitochondrial × 1 (P07471) Cytochrome c oxidase subunit 6B1 × 1 (P00429) Cytochrome c oxidase subunit 6C × 1 (P04038) Cytochrome c oxidase subunit 7A1, mitochondrial × 1 (P07470) Cytochrome c oxidase subunit 7B, mitochondrial × 1 (P13183) Cytochrome c oxidase subunit 7C, mitochondrial × 1 (P00430) Cytochrome c oxidase subunit 8B, mitochondrial × 1 (P10175) HEME-A × 2 COPPER (II) ION × 1 MAGNESIUM ION × 1 SODIUM ION × 1 AZIDE ION × 2 TRISTEAROYLGLYCEROL × 3 (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE × 4 1,2-ETHANEDIOL × 32 DINUCLEAR COPPER ION × 1 (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE × 1 CHOLIC ACID × 3 DECYL-BETA-D-MALTOPYRANOSIDE × 4 UNKNOWN ATOM OR ION × 1 CARDIOLIPIN × 2 (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE × 3 ZINC ION × 1 water × 13 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name COX5B_BOVIN
Isoform —
PDB entities 6
Chains and sequence ranges Author chain F; PDBConstruct 1–98; UniProt 32–129 Author chain S; PDBConstruct 1–98; UniProt 32–129

Cytochrome c oxidase subunit 6A2, mitochondrial

OrganismNot specified

UniProt P07471

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 13 Cytochrome c oxidase subunit 1 × 1 (P00396) Cytochrome c oxidase subunit 2 × 1 (P68530) Cytochrome c oxidase subunit 3 × 1 (P00415) Cytochrome c oxidase subunit 4 isoform 1, mitochondrial × 1 (P00423) Cytochrome c oxidase subunit 5A, mitochondrial × 1 (P00426) Cytochrome c oxidase subunit 5B, mitochondrial × 1 (P00428) Cytochrome c oxidase subunit 6B1 × 1 (P00429) Cytochrome c oxidase subunit 6C × 1 (P04038) Cytochrome c oxidase subunit 7A1, mitochondrial × 1 (P07470) Cytochrome c oxidase subunit 7B, mitochondrial × 1 (P13183) Cytochrome c oxidase subunit 7C, mitochondrial × 1 (P00430) Cytochrome c oxidase subunit 8B, mitochondrial × 1 (P10175) HEME-A × 2 COPPER (II) ION × 1 MAGNESIUM ION × 1 SODIUM ION × 1 AZIDE ION × 2 TRISTEAROYLGLYCEROL × 3 (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE × 4 1,2-ETHANEDIOL × 37 DINUCLEAR COPPER ION × 1 (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE × 1 CHOLIC ACID × 3 DECYL-BETA-D-MALTOPYRANOSIDE × 4 UNKNOWN ATOM OR ION × 1 CARDIOLIPIN × 2 (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE × 3 ZINC ION × 1 water × 13 Consistent with protein count
2 Protein heterocomplex Heteromer Protein 13 Cytochrome c oxidase subunit 1 × 1 (P00396) Cytochrome c oxidase subunit 2 × 1 (P68530) Cytochrome c oxidase subunit 3 × 1 (P00415) Cytochrome c oxidase subunit 4 isoform 1, mitochondrial × 1 (P00423) Cytochrome c oxidase subunit 5A, mitochondrial × 1 (P00426) Cytochrome c oxidase subunit 5B, mitochondrial × 1 (P00428) Cytochrome c oxidase subunit 6B1 × 1 (P00429) Cytochrome c oxidase subunit 6C × 1 (P04038) Cytochrome c oxidase subunit 7A1, mitochondrial × 1 (P07470) Cytochrome c oxidase subunit 7B, mitochondrial × 1 (P13183) Cytochrome c oxidase subunit 7C, mitochondrial × 1 (P00430) Cytochrome c oxidase subunit 8B, mitochondrial × 1 (P10175) HEME-A × 2 COPPER (II) ION × 1 MAGNESIUM ION × 1 SODIUM ION × 1 AZIDE ION × 2 TRISTEAROYLGLYCEROL × 3 (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE × 4 1,2-ETHANEDIOL × 32 DINUCLEAR COPPER ION × 1 (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE × 1 CHOLIC ACID × 3 DECYL-BETA-D-MALTOPYRANOSIDE × 4 UNKNOWN ATOM OR ION × 1 CARDIOLIPIN × 2 (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE × 3 ZINC ION × 1 water × 13 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name CX6A2_BOVIN
Isoform —
PDB entities 7
Chains and sequence ranges Author chain G; PDBConstruct 1–85; UniProt 13–97 Author chain T; PDBConstruct 1–85; UniProt 13–97

Cytochrome c oxidase subunit 6B1

OrganismNot specified

UniProt P00429

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 13 Cytochrome c oxidase subunit 1 × 1 (P00396) Cytochrome c oxidase subunit 2 × 1 (P68530) Cytochrome c oxidase subunit 3 × 1 (P00415) Cytochrome c oxidase subunit 4 isoform 1, mitochondrial × 1 (P00423) Cytochrome c oxidase subunit 5A, mitochondrial × 1 (P00426) Cytochrome c oxidase subunit 5B, mitochondrial × 1 (P00428) Cytochrome c oxidase subunit 6A2, mitochondrial × 1 (P07471) Cytochrome c oxidase subunit 6C × 1 (P04038) Cytochrome c oxidase subunit 7A1, mitochondrial × 1 (P07470) Cytochrome c oxidase subunit 7B, mitochondrial × 1 (P13183) Cytochrome c oxidase subunit 7C, mitochondrial × 1 (P00430) Cytochrome c oxidase subunit 8B, mitochondrial × 1 (P10175) HEME-A × 2 COPPER (II) ION × 1 MAGNESIUM ION × 1 SODIUM ION × 1 AZIDE ION × 2 TRISTEAROYLGLYCEROL × 3 (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE × 4 1,2-ETHANEDIOL × 37 DINUCLEAR COPPER ION × 1 (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE × 1 CHOLIC ACID × 3 DECYL-BETA-D-MALTOPYRANOSIDE × 4 UNKNOWN ATOM OR ION × 1 CARDIOLIPIN × 2 (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE × 3 ZINC ION × 1 water × 13 Consistent with protein count
2 Protein heterocomplex Heteromer Protein 13 Cytochrome c oxidase subunit 1 × 1 (P00396) Cytochrome c oxidase subunit 2 × 1 (P68530) Cytochrome c oxidase subunit 3 × 1 (P00415) Cytochrome c oxidase subunit 4 isoform 1, mitochondrial × 1 (P00423) Cytochrome c oxidase subunit 5A, mitochondrial × 1 (P00426) Cytochrome c oxidase subunit 5B, mitochondrial × 1 (P00428) Cytochrome c oxidase subunit 6A2, mitochondrial × 1 (P07471) Cytochrome c oxidase subunit 6C × 1 (P04038) Cytochrome c oxidase subunit 7A1, mitochondrial × 1 (P07470) Cytochrome c oxidase subunit 7B, mitochondrial × 1 (P13183) Cytochrome c oxidase subunit 7C, mitochondrial × 1 (P00430) Cytochrome c oxidase subunit 8B, mitochondrial × 1 (P10175) HEME-A × 2 COPPER (II) ION × 1 MAGNESIUM ION × 1 SODIUM ION × 1 AZIDE ION × 2 TRISTEAROYLGLYCEROL × 3 (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE × 4 1,2-ETHANEDIOL × 32 DINUCLEAR COPPER ION × 1 (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE × 1 CHOLIC ACID × 3 DECYL-BETA-D-MALTOPYRANOSIDE × 4 UNKNOWN ATOM OR ION × 1 CARDIOLIPIN × 2 (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE × 3 ZINC ION × 1 water × 13 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name CX6B1_BOVIN
Isoform —
PDB entities 8
Chains and sequence ranges Author chain H; PDBConstruct 1–85; UniProt 2–86 Author chain U; PDBConstruct 1–85; UniProt 2–86

Cytochrome c oxidase subunit 6C

OrganismNot specified

UniProt P04038

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 13 Cytochrome c oxidase subunit 1 × 1 (P00396) Cytochrome c oxidase subunit 2 × 1 (P68530) Cytochrome c oxidase subunit 3 × 1 (P00415) Cytochrome c oxidase subunit 4 isoform 1, mitochondrial × 1 (P00423) Cytochrome c oxidase subunit 5A, mitochondrial × 1 (P00426) Cytochrome c oxidase subunit 5B, mitochondrial × 1 (P00428) Cytochrome c oxidase subunit 6A2, mitochondrial × 1 (P07471) Cytochrome c oxidase subunit 6B1 × 1 (P00429) Cytochrome c oxidase subunit 7A1, mitochondrial × 1 (P07470) Cytochrome c oxidase subunit 7B, mitochondrial × 1 (P13183) Cytochrome c oxidase subunit 7C, mitochondrial × 1 (P00430) Cytochrome c oxidase subunit 8B, mitochondrial × 1 (P10175) HEME-A × 2 COPPER (II) ION × 1 MAGNESIUM ION × 1 SODIUM ION × 1 AZIDE ION × 2 TRISTEAROYLGLYCEROL × 3 (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE × 4 1,2-ETHANEDIOL × 37 DINUCLEAR COPPER ION × 1 (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE × 1 CHOLIC ACID × 3 DECYL-BETA-D-MALTOPYRANOSIDE × 4 UNKNOWN ATOM OR ION × 1 CARDIOLIPIN × 2 (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE × 3 ZINC ION × 1 water × 13 Consistent with protein count
2 Protein heterocomplex Heteromer Protein 13 Cytochrome c oxidase subunit 1 × 1 (P00396) Cytochrome c oxidase subunit 2 × 1 (P68530) Cytochrome c oxidase subunit 3 × 1 (P00415) Cytochrome c oxidase subunit 4 isoform 1, mitochondrial × 1 (P00423) Cytochrome c oxidase subunit 5A, mitochondrial × 1 (P00426) Cytochrome c oxidase subunit 5B, mitochondrial × 1 (P00428) Cytochrome c oxidase subunit 6A2, mitochondrial × 1 (P07471) Cytochrome c oxidase subunit 6B1 × 1 (P00429) Cytochrome c oxidase subunit 7A1, mitochondrial × 1 (P07470) Cytochrome c oxidase subunit 7B, mitochondrial × 1 (P13183) Cytochrome c oxidase subunit 7C, mitochondrial × 1 (P00430) Cytochrome c oxidase subunit 8B, mitochondrial × 1 (P10175) HEME-A × 2 COPPER (II) ION × 1 MAGNESIUM ION × 1 SODIUM ION × 1 AZIDE ION × 2 TRISTEAROYLGLYCEROL × 3 (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE × 4 1,2-ETHANEDIOL × 32 DINUCLEAR COPPER ION × 1 (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE × 1 CHOLIC ACID × 3 DECYL-BETA-D-MALTOPYRANOSIDE × 4 UNKNOWN ATOM OR ION × 1 CARDIOLIPIN × 2 (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE × 3 ZINC ION × 1 water × 13 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name COX6C_BOVIN
Isoform —
PDB entities 9
Chains and sequence ranges Author chain I; PDBConstruct 1–73; UniProt 2–74 Author chain V; PDBConstruct 1–73; UniProt 2–74

Cytochrome c oxidase subunit 7A1, mitochondrial

OrganismNot specified

UniProt P07470

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 13 Cytochrome c oxidase subunit 1 × 1 (P00396) Cytochrome c oxidase subunit 2 × 1 (P68530) Cytochrome c oxidase subunit 3 × 1 (P00415) Cytochrome c oxidase subunit 4 isoform 1, mitochondrial × 1 (P00423) Cytochrome c oxidase subunit 5A, mitochondrial × 1 (P00426) Cytochrome c oxidase subunit 5B, mitochondrial × 1 (P00428) Cytochrome c oxidase subunit 6A2, mitochondrial × 1 (P07471) Cytochrome c oxidase subunit 6B1 × 1 (P00429) Cytochrome c oxidase subunit 6C × 1 (P04038) Cytochrome c oxidase subunit 7B, mitochondrial × 1 (P13183) Cytochrome c oxidase subunit 7C, mitochondrial × 1 (P00430) Cytochrome c oxidase subunit 8B, mitochondrial × 1 (P10175) HEME-A × 2 COPPER (II) ION × 1 MAGNESIUM ION × 1 SODIUM ION × 1 AZIDE ION × 2 TRISTEAROYLGLYCEROL × 3 (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE × 4 1,2-ETHANEDIOL × 37 DINUCLEAR COPPER ION × 1 (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE × 1 CHOLIC ACID × 3 DECYL-BETA-D-MALTOPYRANOSIDE × 4 UNKNOWN ATOM OR ION × 1 CARDIOLIPIN × 2 (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE × 3 ZINC ION × 1 water × 13 Consistent with protein count
2 Protein heterocomplex Heteromer Protein 13 Cytochrome c oxidase subunit 1 × 1 (P00396) Cytochrome c oxidase subunit 2 × 1 (P68530) Cytochrome c oxidase subunit 3 × 1 (P00415) Cytochrome c oxidase subunit 4 isoform 1, mitochondrial × 1 (P00423) Cytochrome c oxidase subunit 5A, mitochondrial × 1 (P00426) Cytochrome c oxidase subunit 5B, mitochondrial × 1 (P00428) Cytochrome c oxidase subunit 6A2, mitochondrial × 1 (P07471) Cytochrome c oxidase subunit 6B1 × 1 (P00429) Cytochrome c oxidase subunit 6C × 1 (P04038) Cytochrome c oxidase subunit 7B, mitochondrial × 1 (P13183) Cytochrome c oxidase subunit 7C, mitochondrial × 1 (P00430) Cytochrome c oxidase subunit 8B, mitochondrial × 1 (P10175) HEME-A × 2 COPPER (II) ION × 1 MAGNESIUM ION × 1 SODIUM ION × 1 AZIDE ION × 2 TRISTEAROYLGLYCEROL × 3 (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE × 4 1,2-ETHANEDIOL × 32 DINUCLEAR COPPER ION × 1 (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE × 1 CHOLIC ACID × 3 DECYL-BETA-D-MALTOPYRANOSIDE × 4 UNKNOWN ATOM OR ION × 1 CARDIOLIPIN × 2 (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE × 3 ZINC ION × 1 water × 13 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name CX7A1_BOVIN
Isoform —
PDB entities 10
Chains and sequence ranges Author chain J; PDBConstruct 1–59; UniProt 22–80 Author chain W; PDBConstruct 1–59; UniProt 22–80

Cytochrome c oxidase subunit 7B, mitochondrial

OrganismNot specified

UniProt P13183

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 13 Cytochrome c oxidase subunit 1 × 1 (P00396) Cytochrome c oxidase subunit 2 × 1 (P68530) Cytochrome c oxidase subunit 3 × 1 (P00415) Cytochrome c oxidase subunit 4 isoform 1, mitochondrial × 1 (P00423) Cytochrome c oxidase subunit 5A, mitochondrial × 1 (P00426) Cytochrome c oxidase subunit 5B, mitochondrial × 1 (P00428) Cytochrome c oxidase subunit 6A2, mitochondrial × 1 (P07471) Cytochrome c oxidase subunit 6B1 × 1 (P00429) Cytochrome c oxidase subunit 6C × 1 (P04038) Cytochrome c oxidase subunit 7A1, mitochondrial × 1 (P07470) Cytochrome c oxidase subunit 7C, mitochondrial × 1 (P00430) Cytochrome c oxidase subunit 8B, mitochondrial × 1 (P10175) HEME-A × 2 COPPER (II) ION × 1 MAGNESIUM ION × 1 SODIUM ION × 1 AZIDE ION × 2 TRISTEAROYLGLYCEROL × 3 (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE × 4 1,2-ETHANEDIOL × 37 DINUCLEAR COPPER ION × 1 (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE × 1 CHOLIC ACID × 3 DECYL-BETA-D-MALTOPYRANOSIDE × 4 UNKNOWN ATOM OR ION × 1 CARDIOLIPIN × 2 (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE × 3 ZINC ION × 1 water × 13 Consistent with protein count
2 Protein heterocomplex Heteromer Protein 13 Cytochrome c oxidase subunit 1 × 1 (P00396) Cytochrome c oxidase subunit 2 × 1 (P68530) Cytochrome c oxidase subunit 3 × 1 (P00415) Cytochrome c oxidase subunit 4 isoform 1, mitochondrial × 1 (P00423) Cytochrome c oxidase subunit 5A, mitochondrial × 1 (P00426) Cytochrome c oxidase subunit 5B, mitochondrial × 1 (P00428) Cytochrome c oxidase subunit 6A2, mitochondrial × 1 (P07471) Cytochrome c oxidase subunit 6B1 × 1 (P00429) Cytochrome c oxidase subunit 6C × 1 (P04038) Cytochrome c oxidase subunit 7A1, mitochondrial × 1 (P07470) Cytochrome c oxidase subunit 7C, mitochondrial × 1 (P00430) Cytochrome c oxidase subunit 8B, mitochondrial × 1 (P10175) HEME-A × 2 COPPER (II) ION × 1 MAGNESIUM ION × 1 SODIUM ION × 1 AZIDE ION × 2 TRISTEAROYLGLYCEROL × 3 (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE × 4 1,2-ETHANEDIOL × 32 DINUCLEAR COPPER ION × 1 (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE × 1 CHOLIC ACID × 3 DECYL-BETA-D-MALTOPYRANOSIDE × 4 UNKNOWN ATOM OR ION × 1 CARDIOLIPIN × 2 (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE × 3 ZINC ION × 1 water × 13 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name COX7B_BOVIN
Isoform —
PDB entities 11
Chains and sequence ranges Author chain K; PDBConstruct 1–56; UniProt 25–80 Author chain X; PDBConstruct 1–56; UniProt 25–80

Cytochrome c oxidase subunit 7C, mitochondrial

OrganismNot specified

UniProt P00430

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 13 Cytochrome c oxidase subunit 1 × 1 (P00396) Cytochrome c oxidase subunit 2 × 1 (P68530) Cytochrome c oxidase subunit 3 × 1 (P00415) Cytochrome c oxidase subunit 4 isoform 1, mitochondrial × 1 (P00423) Cytochrome c oxidase subunit 5A, mitochondrial × 1 (P00426) Cytochrome c oxidase subunit 5B, mitochondrial × 1 (P00428) Cytochrome c oxidase subunit 6A2, mitochondrial × 1 (P07471) Cytochrome c oxidase subunit 6B1 × 1 (P00429) Cytochrome c oxidase subunit 6C × 1 (P04038) Cytochrome c oxidase subunit 7A1, mitochondrial × 1 (P07470) Cytochrome c oxidase subunit 7B, mitochondrial × 1 (P13183) Cytochrome c oxidase subunit 8B, mitochondrial × 1 (P10175) HEME-A × 2 COPPER (II) ION × 1 MAGNESIUM ION × 1 SODIUM ION × 1 AZIDE ION × 2 TRISTEAROYLGLYCEROL × 3 (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE × 4 1,2-ETHANEDIOL × 37 DINUCLEAR COPPER ION × 1 (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE × 1 CHOLIC ACID × 3 DECYL-BETA-D-MALTOPYRANOSIDE × 4 UNKNOWN ATOM OR ION × 1 CARDIOLIPIN × 2 (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE × 3 ZINC ION × 1 water × 13 Consistent with protein count
2 Protein heterocomplex Heteromer Protein 13 Cytochrome c oxidase subunit 1 × 1 (P00396) Cytochrome c oxidase subunit 2 × 1 (P68530) Cytochrome c oxidase subunit 3 × 1 (P00415) Cytochrome c oxidase subunit 4 isoform 1, mitochondrial × 1 (P00423) Cytochrome c oxidase subunit 5A, mitochondrial × 1 (P00426) Cytochrome c oxidase subunit 5B, mitochondrial × 1 (P00428) Cytochrome c oxidase subunit 6A2, mitochondrial × 1 (P07471) Cytochrome c oxidase subunit 6B1 × 1 (P00429) Cytochrome c oxidase subunit 6C × 1 (P04038) Cytochrome c oxidase subunit 7A1, mitochondrial × 1 (P07470) Cytochrome c oxidase subunit 7B, mitochondrial × 1 (P13183) Cytochrome c oxidase subunit 8B, mitochondrial × 1 (P10175) HEME-A × 2 COPPER (II) ION × 1 MAGNESIUM ION × 1 SODIUM ION × 1 AZIDE ION × 2 TRISTEAROYLGLYCEROL × 3 (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE × 4 1,2-ETHANEDIOL × 32 DINUCLEAR COPPER ION × 1 (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE × 1 CHOLIC ACID × 3 DECYL-BETA-D-MALTOPYRANOSIDE × 4 UNKNOWN ATOM OR ION × 1 CARDIOLIPIN × 2 (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE × 3 ZINC ION × 1 water × 13 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name COX7C_BOVIN
Isoform —
PDB entities 12
Chains and sequence ranges Author chain L; PDBConstruct 1–47; UniProt 17–63 Author chain Y; PDBConstruct 1–47; UniProt 17–63

Cytochrome c oxidase subunit 8B, mitochondrial

OrganismNot specified

UniProt P10175

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 13 Cytochrome c oxidase subunit 1 × 1 (P00396) Cytochrome c oxidase subunit 2 × 1 (P68530) Cytochrome c oxidase subunit 3 × 1 (P00415) Cytochrome c oxidase subunit 4 isoform 1, mitochondrial × 1 (P00423) Cytochrome c oxidase subunit 5A, mitochondrial × 1 (P00426) Cytochrome c oxidase subunit 5B, mitochondrial × 1 (P00428) Cytochrome c oxidase subunit 6A2, mitochondrial × 1 (P07471) Cytochrome c oxidase subunit 6B1 × 1 (P00429) Cytochrome c oxidase subunit 6C × 1 (P04038) Cytochrome c oxidase subunit 7A1, mitochondrial × 1 (P07470) Cytochrome c oxidase subunit 7B, mitochondrial × 1 (P13183) Cytochrome c oxidase subunit 7C, mitochondrial × 1 (P00430) HEME-A × 2 COPPER (II) ION × 1 MAGNESIUM ION × 1 SODIUM ION × 1 AZIDE ION × 2 TRISTEAROYLGLYCEROL × 3 (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE × 4 1,2-ETHANEDIOL × 37 DINUCLEAR COPPER ION × 1 (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE × 1 CHOLIC ACID × 3 DECYL-BETA-D-MALTOPYRANOSIDE × 4 UNKNOWN ATOM OR ION × 1 CARDIOLIPIN × 2 (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE × 3 ZINC ION × 1 water × 13 Consistent with protein count
2 Protein heterocomplex Heteromer Protein 13 Cytochrome c oxidase subunit 1 × 1 (P00396) Cytochrome c oxidase subunit 2 × 1 (P68530) Cytochrome c oxidase subunit 3 × 1 (P00415) Cytochrome c oxidase subunit 4 isoform 1, mitochondrial × 1 (P00423) Cytochrome c oxidase subunit 5A, mitochondrial × 1 (P00426) Cytochrome c oxidase subunit 5B, mitochondrial × 1 (P00428) Cytochrome c oxidase subunit 6A2, mitochondrial × 1 (P07471) Cytochrome c oxidase subunit 6B1 × 1 (P00429) Cytochrome c oxidase subunit 6C × 1 (P04038) Cytochrome c oxidase subunit 7A1, mitochondrial × 1 (P07470) Cytochrome c oxidase subunit 7B, mitochondrial × 1 (P13183) Cytochrome c oxidase subunit 7C, mitochondrial × 1 (P00430) HEME-A × 2 COPPER (II) ION × 1 MAGNESIUM ION × 1 SODIUM ION × 1 AZIDE ION × 2 TRISTEAROYLGLYCEROL × 3 (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE × 4 1,2-ETHANEDIOL × 32 DINUCLEAR COPPER ION × 1 (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE × 1 CHOLIC ACID × 3 DECYL-BETA-D-MALTOPYRANOSIDE × 4 UNKNOWN ATOM OR ION × 1 CARDIOLIPIN × 2 (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE × 3 ZINC ION × 1 water × 13 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name COX8B_BOVIN
Isoform —
PDB entities 13
Chains and sequence ranges Author chain M; PDBConstruct 1–46; UniProt 25–70 Author chain Z; PDBConstruct 1–46; UniProt 25–70

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id5z85
Deposition date deposition_date2018-01-31
Structure title titleThe structure of azide-bound cytochrome c oxidase determined using the another batch crystals exposed to 20 mM azide solution for 2 days
Keywords keywordsmetalloenzyme cytochrome c oxidase proton pump bioenergetics heme copper, MEMBRANE PROTEIN, OXIDOREDUCTASE; OXIDOREDUCTASE
Experimental Method methodX-RAY DIFFRACTION
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 5z85__assembly_1__model_1 tridecameric (13) Excluded — —
Exclusion reason: The source record does not identify the atom or ion element unambiguously, so a reliable calculation is not possible.
2 1 5z85__assembly_2__model_1 tridecameric (13) Excluded — —
Exclusion reason: The source record does not identify the atom or ion element unambiguously, so a reliable calculation is not possible.
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (30)

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6. Fold Classification (SCOP + CATH) 58 domains

SCOP 2.08 (28 domains)

Domain ID domain_idd5z85a_
Class classf — Membrane and cell surface proteins and peptides
Fold Fold foldf.24 — Cytochrome c oxidase subunit I-like
Superfamily Superfamily superfamilyf.24.1 — Cytochrome c oxidase subunit I-like
Family Family familyf.24.1.1 — Cytochrome c oxidase subunit I-like
Domain ID domain_idd5z85b1
Class classf — Membrane and cell surface proteins and peptides
Fold Fold foldf.17 — Transmembrane helix hairpin
Superfamily Superfamily superfamilyf.17.2 — Cytochrome c oxidase subunit II-like, transmembrane region
Family Family familyf.17.2.0 — automated matches
Domain ID domain_idd5z85b2
Class classb — All beta proteins
Fold Fold foldb.6 — Cupredoxin-like
Superfamily Superfamily superfamilyb.6.1 — Cupredoxins
Family Family familyb.6.1.2 — Periplasmic domain of cytochrome c oxidase subunit II
Domain ID domain_idd5z85c_
Class classf — Membrane and cell surface proteins and peptides
Fold Fold foldf.25 — Cytochrome c oxidase subunit III-like
Superfamily Superfamily superfamilyf.25.1 — Cytochrome c oxidase subunit III-like
Family Family familyf.25.1.1 — Cytochrome c oxidase subunit III-like
Domain ID domain_idd5z85d_
Class classf — Membrane and cell surface proteins and peptides
Fold Fold foldf.23 — Single transmembrane helix
Superfamily Superfamily superfamilyf.23.1 — Mitochondrial cytochrome c oxidase subunit IV
Family Family familyf.23.1.1 — Mitochondrial cytochrome c oxidase subunit IV
Domain ID domain_idd5z85e_
Class classa — All alpha proteins
Fold Fold folda.118 — alpha-alpha superhelix
Superfamily Superfamily superfamilya.118.11 — Cytochrome c oxidase subunit E
Family Family familya.118.11.1 — Cytochrome c oxidase subunit E
Domain ID domain_idd5z85f_
Class classg — Small proteins
Fold Fold foldg.41 — Rubredoxin-like
Superfamily Superfamily superfamilyg.41.5 — Rubredoxin-like
Family Family familyg.41.5.3 — Cytochrome c oxidase Subunit F
Domain ID domain_idd5z85g_
Class classf — Membrane and cell surface proteins and peptides
Fold Fold foldf.23 — Single transmembrane helix
Superfamily Superfamily superfamilyf.23.2 — Mitochondrial cytochrome c oxidase subunit VIa
Family Family familyf.23.2.1 — Mitochondrial cytochrome c oxidase subunit VIa
Domain ID domain_idd5z85h_
Class classa — All alpha proteins
Fold Fold folda.51 — Cytochrome c oxidase subunit h
Superfamily Superfamily superfamilya.51.1 — Cytochrome c oxidase subunit h
Family Family familya.51.1.1 — Cytochrome c oxidase subunit h
Domain ID domain_idd5z85i_
Class classf — Membrane and cell surface proteins and peptides
Fold Fold foldf.23 — Single transmembrane helix
Superfamily Superfamily superfamilyf.23.3 — Mitochondrial cytochrome c oxidase subunit VIc
Family Family familyf.23.3.1 — Mitochondrial cytochrome c oxidase subunit VIc
Domain ID domain_idd5z85j_
Class classf — Membrane and cell surface proteins and peptides
Fold Fold foldf.23 — Single transmembrane helix
Superfamily Superfamily superfamilyf.23.4 — Mitochondrial cytochrome c oxidase subunit VIIa
Family Family familyf.23.4.1 — Mitochondrial cytochrome c oxidase subunit VIIa
Domain ID domain_idd5z85k_
Class classf — Membrane and cell surface proteins and peptides
Fold Fold foldf.23 — Single transmembrane helix
Superfamily Superfamily superfamilyf.23.5 — Mitochondrial cytochrome c oxidase subunit VIIb
Family Family familyf.23.5.1 — Mitochondrial cytochrome c oxidase subunit VIIb
Domain ID domain_idd5z85l_
Class classf — Membrane and cell surface proteins and peptides
Fold Fold foldf.23 — Single transmembrane helix
Superfamily Superfamily superfamilyf.23.6 — Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa)
Family Family familyf.23.6.1 — Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa)
Domain ID domain_idd5z85m_
Class classf — Membrane and cell surface proteins and peptides
Fold Fold foldf.23 — Single transmembrane helix
Superfamily Superfamily superfamilyf.23.7 — Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX)
Family Family familyf.23.7.1 — Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX)
Domain ID domain_idd5z85n_
Class classf — Membrane and cell surface proteins and peptides
Fold Fold foldf.24 — Cytochrome c oxidase subunit I-like
Superfamily Superfamily superfamilyf.24.1 — Cytochrome c oxidase subunit I-like
Family Family familyf.24.1.1 — Cytochrome c oxidase subunit I-like
Domain ID domain_idd5z85o1
Class classf — Membrane and cell surface proteins and peptides
Fold Fold foldf.17 — Transmembrane helix hairpin
Superfamily Superfamily superfamilyf.17.2 — Cytochrome c oxidase subunit II-like, transmembrane region
Family Family familyf.17.2.0 — automated matches
Domain ID domain_idd5z85o2
Class classb — All beta proteins
Fold Fold foldb.6 — Cupredoxin-like
Superfamily Superfamily superfamilyb.6.1 — Cupredoxins
Family Family familyb.6.1.2 — Periplasmic domain of cytochrome c oxidase subunit II
Domain ID domain_idd5z85p_
Class classf — Membrane and cell surface proteins and peptides
Fold Fold foldf.25 — Cytochrome c oxidase subunit III-like
Superfamily Superfamily superfamilyf.25.1 — Cytochrome c oxidase subunit III-like
Family Family familyf.25.1.1 — Cytochrome c oxidase subunit III-like
Domain ID domain_idd5z85q_
Class classf — Membrane and cell surface proteins and peptides
Fold Fold foldf.23 — Single transmembrane helix
Superfamily Superfamily superfamilyf.23.1 — Mitochondrial cytochrome c oxidase subunit IV
Family Family familyf.23.1.1 — Mitochondrial cytochrome c oxidase subunit IV
Domain ID domain_idd5z85r_
Class classa — All alpha proteins
Fold Fold folda.118 — alpha-alpha superhelix
Superfamily Superfamily superfamilya.118.11 — Cytochrome c oxidase subunit E
Family Family familya.118.11.1 — Cytochrome c oxidase subunit E
Domain ID domain_idd5z85s_
Class classg — Small proteins
Fold Fold foldg.41 — Rubredoxin-like
Superfamily Superfamily superfamilyg.41.5 — Rubredoxin-like
Family Family familyg.41.5.3 — Cytochrome c oxidase Subunit F
Domain ID domain_idd5z85t_
Class classf — Membrane and cell surface proteins and peptides
Fold Fold foldf.23 — Single transmembrane helix
Superfamily Superfamily superfamilyf.23.2 — Mitochondrial cytochrome c oxidase subunit VIa
Family Family familyf.23.2.1 — Mitochondrial cytochrome c oxidase subunit VIa
Domain ID domain_idd5z85u_
Class classa — All alpha proteins
Fold Fold folda.51 — Cytochrome c oxidase subunit h
Superfamily Superfamily superfamilya.51.1 — Cytochrome c oxidase subunit h
Family Family familya.51.1.1 — Cytochrome c oxidase subunit h
Domain ID domain_idd5z85v_
Class classf — Membrane and cell surface proteins and peptides
Fold Fold foldf.23 — Single transmembrane helix
Superfamily Superfamily superfamilyf.23.3 — Mitochondrial cytochrome c oxidase subunit VIc
Family Family familyf.23.3.1 — Mitochondrial cytochrome c oxidase subunit VIc
Domain ID domain_idd5z85w_
Class classf — Membrane and cell surface proteins and peptides
Fold Fold foldf.23 — Single transmembrane helix
Superfamily Superfamily superfamilyf.23.4 — Mitochondrial cytochrome c oxidase subunit VIIa
Family Family familyf.23.4.1 — Mitochondrial cytochrome c oxidase subunit VIIa
Domain ID domain_idd5z85x_
Class classf — Membrane and cell surface proteins and peptides
Fold Fold foldf.23 — Single transmembrane helix
Superfamily Superfamily superfamilyf.23.5 — Mitochondrial cytochrome c oxidase subunit VIIb
Family Family familyf.23.5.1 — Mitochondrial cytochrome c oxidase subunit VIIb
Domain ID domain_idd5z85y_
Class classf — Membrane and cell surface proteins and peptides
Fold Fold foldf.23 — Single transmembrane helix
Superfamily Superfamily superfamilyf.23.6 — Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa)
Family Family familyf.23.6.1 — Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa)
Domain ID domain_idd5z85z_
Class classf — Membrane and cell surface proteins and peptides
Fold Fold foldf.23 — Single transmembrane helix
Superfamily Superfamily superfamilyf.23.7 — Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX)
Family Family familyf.23.7.1 — Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX)

CATH v4.4 (30 domains)

Domain ID domain_id5z85A00
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology210 — Cytochrome C Oxidase; Chain A
Homologous superfamily homologous superfamily10 — Cytochrome c oxidase-like, subunit I domain
Domain ID domain_id5z85B01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology287 — Helix Hairpins
Homologous superfamily homologous superfamily90 —
Domain ID domain_id5z85B02
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily420 — Cupredoxins - blue copper proteins
Domain ID domain_id5z85C01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology287 — Helix Hairpins
Homologous superfamily homologous superfamily70 —
Domain ID domain_id5z85C02
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology120 — Four Helix Bundle (Hemerythrin (Met), subunit A)
Homologous superfamily homologous superfamily80 — Cytochrome c oxidase, subunit III, four-helix bundle
Domain ID domain_id5z85D00
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology442 — Cytochrome C Oxidase; Chain D
Homologous superfamily homologous superfamily10 — Cytochrome c oxidase subunit IV
Domain ID domain_id5z85E00
Class class1 — Mainly Alpha
Architecture architecture25 — Alpha Horseshoe
Topology topology40 — Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat
Homologous superfamily homologous superfamily40 — Cytochrome c oxidase, subunit Va/VI
Domain ID domain_id5z85F00
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology11 — Cytochrome C Oxidase; Chain F
Homologous superfamily homologous superfamily10 — Cytochrome c oxidase, subunit Vb
Domain ID domain_id5z85G00
Class class4 — Few Secondary Structures
Architecture architecture10 — Irregular
Topology topology95 — Cytochrome C Oxidase; Chain G
Homologous superfamily homologous superfamily10 — Cytochrome c oxidase, subunit VIa
Domain ID domain_id5z85H00
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology10 — Arc Repressor Mutant, subunit A
Homologous superfamily homologous superfamily140 — Cytochrome c oxidase, subunit VIb
Domain ID domain_id5z85I00
Class class4 — Few Secondary Structures
Architecture architecture10 — Irregular
Topology topology93 — Cytochrome C Oxidase; Chain I
Homologous superfamily homologous superfamily10 — Mitochondrial cytochrome c oxidase subunit VIc/VIIs
Domain ID domain_id5z85J00
Class class4 — Few Secondary Structures
Architecture architecture10 — Irregular
Topology topology91 — Cytochrome C Oxidase; Chain J
Homologous superfamily homologous superfamily10 — Cytochrome c oxidase, subunit VIIa
Domain ID domain_id5z85K00
Class class4 — Few Secondary Structures
Architecture architecture10 — Irregular
Topology topology51 — Cytochrome C Oxidase; Chain K
Homologous superfamily homologous superfamily10 — Cytochrome C Oxidase, chain K
Domain ID domain_id5z85L00
Class class4 — Few Secondary Structures
Architecture architecture10 — Irregular
Topology topology49 — Cytochrome C Oxidase; Chain L
Homologous superfamily homologous superfamily10 — Cytochrome c oxidase subunit VIIc
Domain ID domain_id5z85M00
Class class4 — Few Secondary Structures
Architecture architecture10 — Irregular
Topology topology81 — Cytochrome C Oxidase; Chain M
Homologous superfamily homologous superfamily10 — Cytochrome c oxidase, subunit 8
Domain ID domain_id5z85N00
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology210 — Cytochrome C Oxidase; Chain A
Homologous superfamily homologous superfamily10 — Cytochrome c oxidase-like, subunit I domain
Domain ID domain_id5z85O01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology287 — Helix Hairpins
Homologous superfamily homologous superfamily90 —
Domain ID domain_id5z85O02
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily420 — Cupredoxins - blue copper proteins
Domain ID domain_id5z85P01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology287 — Helix Hairpins
Homologous superfamily homologous superfamily70 —
Domain ID domain_id5z85P02
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology120 — Four Helix Bundle (Hemerythrin (Met), subunit A)
Homologous superfamily homologous superfamily80 — Cytochrome c oxidase, subunit III, four-helix bundle
Domain ID domain_id5z85Q00
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology442 — Cytochrome C Oxidase; Chain D
Homologous superfamily homologous superfamily10 — Cytochrome c oxidase subunit IV
Domain ID domain_id5z85R00
Class class1 — Mainly Alpha
Architecture architecture25 — Alpha Horseshoe
Topology topology40 — Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat
Homologous superfamily homologous superfamily40 — Cytochrome c oxidase, subunit Va/VI
Domain ID domain_id5z85S00
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology11 — Cytochrome C Oxidase; Chain F
Homologous superfamily homologous superfamily10 — Cytochrome c oxidase, subunit Vb
Domain ID domain_id5z85T00
Class class4 — Few Secondary Structures
Architecture architecture10 — Irregular
Topology topology95 — Cytochrome C Oxidase; Chain G
Homologous superfamily homologous superfamily10 — Cytochrome c oxidase, subunit VIa
Domain ID domain_id5z85U00
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology10 — Arc Repressor Mutant, subunit A
Homologous superfamily homologous superfamily140 — Cytochrome c oxidase, subunit VIb
Domain ID domain_id5z85V00
Class class4 — Few Secondary Structures
Architecture architecture10 — Irregular
Topology topology93 — Cytochrome C Oxidase; Chain I
Homologous superfamily homologous superfamily10 — Mitochondrial cytochrome c oxidase subunit VIc/VIIs
Domain ID domain_id5z85W00
Class class4 — Few Secondary Structures
Architecture architecture10 — Irregular
Topology topology91 — Cytochrome C Oxidase; Chain J
Homologous superfamily homologous superfamily10 — Cytochrome c oxidase, subunit VIIa
Domain ID domain_id5z85X00
Class class4 — Few Secondary Structures
Architecture architecture10 — Irregular
Topology topology51 — Cytochrome C Oxidase; Chain K
Homologous superfamily homologous superfamily10 — Cytochrome C Oxidase, chain K
Domain ID domain_id5z85Y00
Class class4 — Few Secondary Structures
Architecture architecture10 — Irregular
Topology topology49 — Cytochrome C Oxidase; Chain L
Homologous superfamily homologous superfamily10 — Cytochrome c oxidase subunit VIIc
Domain ID domain_id5z85Z00
Class class4 — Few Secondary Structures
Architecture architecture10 — Irregular
Topology topology81 — Cytochrome C Oxidase; Chain M
Homologous superfamily homologous superfamily10 — Cytochrome c oxidase, subunit 8
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7. Citations (1)