2fc2
NO-HEME complex in a bacterial nitric oxide synthase. An Fe(III)-NO may cause nitrosation.
SAXS 散射曲线 SAXS Profile
P(r) 距离分布 P(r) Distribution
1. 结构基本信息 1. Structure Basics
| 条目编号 entry_id | 2fc2 |
| 沉积日期 deposition_date | 2005-12-10 |
| 结构标题 title | NO-HEME complex in a bacterial nitric oxide synthase. An Fe(III)-NO may cause nitrosation. |
| 关键词 keywords | N-Nitrosation, NO-heme complex, Nitric Oxide Synthase, OXIDOREDUCTASE; OXIDOREDUCTASE |
| 实验方法 method | X-RAY DIFFRACTION |
2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)
| 回转半径 Rg (Guinier) rg_guinier | 39.05 Å |
| 回转半径 Rg (电子) rg_electron | 39.28 Å |
| 零角强度 I(0) i0 | 111304000.00 |
| 分子量 molecular_weight | 84953.0 kDa |
| 排除体积 excluded_volume | 106060 ų |
| 包络体积 envelope_volume | 149170 ų |
| 水化壳体积 shell_volume | 33302 ų |
| 包络直径 envelope_diameter | 138.6 Å |
| 壳层 Rg shell_rg | 41.95 Å |
| 包络 Rg envelope_rg | 38.77 Å |
| 形状 Rg shape_rg | 39.27 Å |
| 总 Rg total_rg | 39.48 Å |
| 总原子数 total_atoms | 6008 |
| 残基数 n_residues | 724 |
| 球谐函数阶数 n_harmonics | 20 |
| q 范围 q_range | — – 0.5000 Å−1 |
| 数据点数 n_points | 101 |
| 壳层类型 shell_type | directional |
| 溶剂电子密度 solvent_density | 0.3340 e/ų |
| 壳层衬度 contrast_shell | 0.0300 e/ų |
| CRYSOL 版本 crysol_version | 4.1.3 |
3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)
| 最大尺寸 Dmax dmax | 131.5 Å |
| Rg (实空间) rg_real | 39.54 Å |
| Rg 误差 (实空间) rg_real_error | 1.48 Å |
| I(0) (实空间) i0_real | 1.1130e+08 |
| I(0) 误差 (实空间) i0_real_error | 2.1010e+06 |
| Rg (倒空间) rg_reciprocal | 39.24 Å |
| I(0) (倒空间) i0_reciprocal | 111300000.0000 |
| 解质量估计 total_estimate | 0.7818 |
| 解质量评级 solution_quality | GOOD a GOOD solution |
| P(r) 峰数 n_peaks | 2 |
| 主峰位置 r_peak_primary | 29.6 Å |
| 偏度 Skewness skewness | 0.448 |
| 峰度 Kurtosis kurtosis | -0.618 |
| 角度范围 angular_range | — – 0.2000 Å−1 |
| 当前正则化参数 α current_alpha | 0.0000 |
| 最高正则化参数 α highest_alpha | 16760000.0000 |
| 实空间数据点数 n_real_points | 41 |
| GNOM 版本 gnom_version | 4.1.3 |
| 质量判据 quality_criteria | AN1: 0.000; Oscil: 0.659; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.537; Smooth: 0.645 |
4. 晶体学与实验 4. Crystallography & Experiment
5. 实体与聚合体信息 (6)
6. 折叠分类 (SCOP + CATH) 10 domains
SCOP 2.08 (4 domains)
| 结构域编号 domain_id | d2fc2a1 |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.174 — Nitric oxide (NO) synthase oxygenase domain |
| 超家族 Superfamily superfamily | d.174.1 — Nitric oxide (NO) synthase oxygenase domain |
| 家族 Family family | d.174.1.1 — Nitric oxide (NO) synthase oxygenase domain |
| 结构域编号 domain_id | d2fc2a2 |
| 类 Class class | l — Artifacts |
| 折叠类型 Fold fold | l.1 — Tags |
| 超家族 Superfamily superfamily | l.1.1 — Tags |
| 家族 Family family | l.1.1.1 — Tags |
| 结构域编号 domain_id | d2fc2b1 |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.174 — Nitric oxide (NO) synthase oxygenase domain |
| 超家族 Superfamily superfamily | d.174.1 — Nitric oxide (NO) synthase oxygenase domain |
| 家族 Family family | d.174.1.1 — Nitric oxide (NO) synthase oxygenase domain |
| 结构域编号 domain_id | d2fc2b2 |
| 类 Class class | l — Artifacts |
| 折叠类型 Fold fold | l.1 — Tags |
| 超家族 Superfamily superfamily | l.1.1 — Tags |
| 家族 Family family | l.1.1.1 — Tags |
CATH v4.4 (6 domains)
| 结构域编号 domain_id | 2fc2A01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 90 — Alpha-Beta Complex |
| 拓扑 Topology topology | 340 — Nitric Oxide Synthase; Chain A, domain 1 |
| 同源超家族 H-superfamily homologous superfamily | 10 — Nitric Oxide Synthase; Chain A, domain 1 |
| 结构域编号 domain_id | 2fc2A02 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 90 — Alpha-Beta Complex |
| 拓扑 Topology topology | 440 — Nitric Oxide Synthase;Heme Domain; Chain A, domain 2 |
| 同源超家族 H-superfamily homologous superfamily | 10 — Nitric Oxide Synthase;Heme Domain;Chain A domain 2 |
| 结构域编号 domain_id | 2fc2A03 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 90 — Alpha-Beta Complex |
| 拓扑 Topology topology | 1230 — Bovine Endothelial Nitric Oxide Synthase Heme Domain; Chain: A,domain 3 |
| 同源超家族 H-superfamily homologous superfamily | 10 — Nitric Oxide Synthase; Chain A, domain 3 |
| 结构域编号 domain_id | 2fc2B01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 90 — Alpha-Beta Complex |
| 拓扑 Topology topology | 340 — Nitric Oxide Synthase; Chain A, domain 1 |
| 同源超家族 H-superfamily homologous superfamily | 10 — Nitric Oxide Synthase; Chain A, domain 1 |
| 结构域编号 domain_id | 2fc2B02 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 90 — Alpha-Beta Complex |
| 拓扑 Topology topology | 440 — Nitric Oxide Synthase;Heme Domain; Chain A, domain 2 |
| 同源超家族 H-superfamily homologous superfamily | 10 — Nitric Oxide Synthase;Heme Domain;Chain A domain 2 |
| 结构域编号 domain_id | 2fc2B03 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 90 — Alpha-Beta Complex |
| 拓扑 Topology topology | 1230 — Bovine Endothelial Nitric Oxide Synthase Heme Domain; Chain: A,domain 3 |
| 同源超家族 H-superfamily homologous superfamily | 10 — Nitric Oxide Synthase; Chain A, domain 3 |