2gkv

Crystal structure of the SGPB:P14'-Ala32 OMTKY3-del(1-5) complex

Method: X-RAY DIFFRACTION
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Streptogrisin B

OrganismNot specified

UniProt P00777

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 2 Ovomucoid × 1 (P68390) water × 2 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PRTB_STRGR
Isoform —
PDB entities 1
Chains and sequence ranges Author chain E; PDBConstruct 1–146; UniProt 115–299

Ovomucoid

Meleagris gallopavo

UniProt P68390

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 2 Streptogrisin B × 1 (P00777) water × 2 Consistent with protein count
2 Protein monomer Monomer Protein 1 water × 1 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name IOVO_MELGA
Isoform —
PDB entities 2
Chains and sequence ranges Author chain A; PDBConstruct 1–51; UniProt 135–185 Author chain B; PDBConstruct 1–51; UniProt 135–185

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id2gkv
Deposition date deposition_date2006-04-03
Structure title titleCrystal structure of the SGPB:P14'-Ala32 OMTKY3-del(1-5) complex
Keywords keywords;beta-barrels, catalytic triad, substrate-binding region, reactive-site loop, alpha-helix, beta-sheet, HYDROLASE-HYDROLASE INHIBITOR COMPLEX ;; HYDROLASE/HYDROLASE INHIBITOR
Experimental Method methodX-RAY DIFFRACTION
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

2gkv__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

2gkv__assembly_1__model_1 | I(q)

10-2 10-1 105 106 107 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

2gkv__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)17.88 Å
Rg (electron density)16.97 Å
Total Rg17.90 Å
Atom count1697
Residues236
Excluded volume29548 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 2gkv__assembly_1__model_1 dimeric (2) Success 4.1.3-1-20251215 (887e7ef) View Download
2 1 2gkv__assembly_2__model_1 monomeric (1) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (3)

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6. Fold Classification (SCOP + CATH) 7 domains

SCOP 2.08 (3 domains)

Domain ID domain_idd2gkva_
Class classg — Small proteins
Fold Fold foldg.68 — Kazal-type serine protease inhibitors
Superfamily Superfamily superfamilyg.68.1 — Kazal-type serine protease inhibitors
Family Family familyg.68.1.1 — Ovomucoid domain III-like
Domain ID domain_idd2gkvb_
Class classg — Small proteins
Fold Fold foldg.68 — Kazal-type serine protease inhibitors
Superfamily Superfamily superfamilyg.68.1 — Kazal-type serine protease inhibitors
Family Family familyg.68.1.1 — Ovomucoid domain III-like
Domain ID domain_idd2gkve_
Class classb — All beta proteins
Fold Fold foldb.47 — Trypsin-like serine proteases
Superfamily Superfamily superfamilyb.47.1 — Trypsin-like serine proteases
Family Family familyb.47.1.1 — Prokaryotic proteases

CATH v4.4 (4 domains)

Domain ID domain_id2gkvA00
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology60 — Wheat Germ Agglutinin (Isolectin 2); domain 1
Homologous superfamily homologous superfamily30 —
Domain ID domain_id2gkvB00
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology60 — Wheat Germ Agglutinin (Isolectin 2); domain 1
Homologous superfamily homologous superfamily30 —
Domain ID domain_id2gkvE01
Class class2 — Mainly Beta
Architecture architecture40 — Beta Barrel
Topology topology10 — Thrombin, subunit H
Homologous superfamily homologous superfamily10 — Trypsin-like serine proteases
Domain ID domain_id2gkvE02
Class class2 — Mainly Beta
Architecture architecture40 — Beta Barrel
Topology topology10 — Thrombin, subunit H
Homologous superfamily homologous superfamily10 — Trypsin-like serine proteases
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7. Citations (1)