4sgb

STRUCTURE OF THE COMPLEX OF STREPTOMYCES GRISEUS PROTEINASE B AND POLYPEPTIDE CHYMOTRYPSIN INHIBITOR-1 FROM RUSSET BURBANK POTATO TUBERS AT 2.1 ANGSTROMS RESOLUTION

Method: X-RAY DIFFRACTION Dmax: 61.5 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

SERINE PROTEINASE B

Streptomyces griseus

UniProt P00777

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain E; UniProt 115–299 Not recorded POTATO INHIBITOR, PCI-1 × 1 (P01080) SO4 SULFATE ION × 2 CA CALCIUM ION × 1 X-RAY DIFFRACTION mmCIF provides none of the parsed experimental conditions Resolution 2.10 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

27 other PDB entries and 30 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name PRTB_STRGR
Isoform
PDB entities 1
Chains and sequence ranges Author chain E; PDBConstruct 1–185; UniProt 115–299

POTATO INHIBITOR, PCI-1

OrganismNot specified

UniProt P01080

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain I; UniProt 55–105 Not recorded SERINE PROTEINASE B × 1 (P00777) SO4 SULFATE ION × 2 CA CALCIUM ION × 1 X-RAY DIFFRACTION mmCIF provides none of the parsed experimental conditions Resolution 2.10 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

No other PDB entry for the same UniProt protein was found.

View Construct and Data Evidence
UniProt name IP2K_SOLTU
Isoform
PDB entities 2
Chains and sequence ranges Author chain I; PDBConstruct 1–51; UniProt 55–105

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 4sgb

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 4sgb
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2. Structure Basics 2. Structure Basics

Entry ID entry_id4sgb
Deposition date deposition_date1989-09-21
Structure title titleSTRUCTURE OF THE COMPLEX OF STREPTOMYCES GRISEUS PROTEINASE B AND POLYPEPTIDE CHYMOTRYPSIN INHIBITOR-1 FROM RUSSET BURBANK POTATO TUBERS AT 2.1 ANGSTROMS RESOLUTION
Keywords keywordsCOMPLEX(SERINE PROTEINASE-INHIBITOR); COMPLEX(SERINE PROTEINASE-INHIBITOR)
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier17.69
Radius of gyration Rg (electron density) rg_electron16.92
Forward intensity I(0) i012459000.00
Molecular weight molecular_weight24392.0 kDa
Excluded volume excluded_volume29635 ų
Envelope volume envelope_volume33389 ų
Hydration-shell volume shell_volume16572 ų
Envelope diameter envelope_diameter62.8
Shell Rg shell_rg23.14
Envelope Rg envelope_rg17.35
Shape Rg shape_rg16.91
Total Rg total_rg17.87
Total atoms total_atoms1701
Residues n_residues220
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax61.5
Rg (real space) rg_real17.62
Rg uncertainty (real space) rg_real_error0.47
I(0) (real space) i0_real1.2460e+07
I(0) uncertainty (real space) i0_real_error1.7990e+05
Rg (reciprocal space) rg_reciprocal17.63
I(0) (reciprocal space) i0_reciprocal12460000.0000
Solution quality estimate total_estimate0.7748
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks3
Primary peak position r_peak_primary22.1
Skewness Skewness skewness0.304
Kurtosis Kurtosis kurtosis-0.167
Angular range angular_range— – 0.4500 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha3071000.0000
Real-space data points n_real_points76
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.696; Stabil: 0.999; Sysdev: 1.000; Positv: 1.000; Valcen: 0.985; Smooth: 0.000

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (5)

7. Fold Classification (SCOP + CATH) 5 domains

SCOP 2.08 (2 domains)

Domain ID domain_idd4sgbe_
Class classb — All beta proteins
Fold Fold foldb.47 — Trypsin-like serine proteases
Superfamily Superfamily superfamilyb.47.1 — Trypsin-like serine proteases
Family Family familyb.47.1.1 — Prokaryotic proteases
Domain ID domain_idd4sgbi_
Class classg — Small proteins
Fold Fold foldg.69 — Plant proteinase inhibitors
Superfamily Superfamily superfamilyg.69.1 — Plant proteinase inhibitors
Family Family familyg.69.1.1 — Plant proteinase inhibitors

CATH v4.4 (3 domains)

Domain ID domain_id4sgbE01
Class class2 — Mainly Beta
Architecture architecture40 — Beta Barrel
Topology topology10 — Thrombin, subunit H
Homologous superfamily homologous superfamily10 — Trypsin-like serine proteases
Domain ID domain_id4sgbE02
Class class2 — Mainly Beta
Architecture architecture40 — Beta Barrel
Topology topology10 — Thrombin, subunit H
Homologous superfamily homologous superfamily10 — Trypsin-like serine proteases
Domain ID domain_id4sgbI00
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology60 — Wheat Germ Agglutinin (Isolectin 2); domain 1
Homologous superfamily homologous superfamily30

8. Citations (1)

9. Files and Curves (10)