2sge

GLU 18 VARIANT OF TURKEY OVOMUCOID INHIBITOR THIRD DOMAIN COMPLEXED WITH STREPTOMYCES GRISEUS PROTEINASE B AT PH 10.7

Method: X-RAY DIFFRACTION Dmax: 60.7 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

Streptogrisin B

OrganismNot specified

UniProt P00777

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain E; UniProt 115–299 Not recorded Ovomucoid × 1 (P68390) PO4 PHOSPHATE ION × 1 K POTASSIUM ION × 1 X-RAY DIFFRACTION X-ray crystallization conditions:pH 10.7;0.4M SODIUM/POTASSIUM PHOSPHATE BUFFER AT PH 10.7 Resolution 1.80 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

27 other PDB entries and 30 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name PRTB_STRGR
Isoform
PDB entities 1
Chains and sequence ranges Author chain E; PDBConstruct 1–185; UniProt 115–299

Ovomucoid

Meleagris gallopavo

UniProt P68390

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain I; UniProt 135–185 Fragment:THIRD DOMAIN Mutation:DEL(1-5), L18E Streptogrisin B × 1 (P00777) PO4 PHOSPHATE ION × 1 K POTASSIUM ION × 1 X-RAY DIFFRACTION X-ray crystallization conditions:pH 10.7;0.4M SODIUM/POTASSIUM PHOSPHATE BUFFER AT PH 10.7 Resolution 1.80 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

36 other PDB entries and 38 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name IOVO_MELGA
Isoform
PDB entities 2
Chains and sequence ranges Author chain I; PDBConstruct 1–51; UniProt 135–185

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 2sge

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 2sge
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2. Structure Basics 2. Structure Basics

Entry ID entry_id2sge
Deposition date deposition_date1999-03-25
Structure title titleGLU 18 VARIANT OF TURKEY OVOMUCOID INHIBITOR THIRD DOMAIN COMPLEXED WITH STREPTOMYCES GRISEUS PROTEINASE B AT PH 10.7
Keywords keywordsCOMPLEX (SERINE PROTEASE-INHIBITOR), SERINE PROTEINASE, PROTEIN INHIBITOR, HYDROLASE-HYDROLASE INHIBITOR COMPLEX; HYDROLASE/HYDROLASE INHIBITOR
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier17.79
Radius of gyration Rg (electron density) rg_electron16.92
Forward intensity I(0) i012356900.00
Molecular weight molecular_weight24371.0 kDa
Excluded volume excluded_volume29626 ų
Envelope volume envelope_volume33054 ų
Hydration-shell volume shell_volume16481 ų
Envelope diameter envelope_diameter61.4
Shell Rg shell_rg23.01
Envelope Rg envelope_rg17.24
Shape Rg shape_rg16.90
Total Rg total_rg17.84
Total atoms total_atoms1703
Residues n_residues229
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax60.7
Rg (real space) rg_real17.73
Rg uncertainty (real space) rg_real_error0.45
I(0) (real space) i0_real1.2360e+07
I(0) uncertainty (real space) i0_real_error1.3940e+05
Rg (reciprocal space) rg_reciprocal17.74
I(0) (reciprocal space) i0_reciprocal12360000.0000
Solution quality estimate total_estimate0.8615
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary22.1
Skewness Skewness skewness0.297
Kurtosis Kurtosis kurtosis-0.216
Angular range angular_range— – 0.4450 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha2941000.0000
Real-space data points n_real_points75
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.737; Stabil: 0.999; Sysdev: 1.000; Positv: 1.000; Valcen: 0.999; Smooth: 0.988

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (5)

7. Fold Classification (SCOP + CATH) 5 domains

SCOP 2.08 (2 domains)

Domain ID domain_idd2sgee_
Class classb — All beta proteins
Fold Fold foldb.47 — Trypsin-like serine proteases
Superfamily Superfamily superfamilyb.47.1 — Trypsin-like serine proteases
Family Family familyb.47.1.1 — Prokaryotic proteases
Domain ID domain_idd2sgei_
Class classg — Small proteins
Fold Fold foldg.68 — Kazal-type serine protease inhibitors
Superfamily Superfamily superfamilyg.68.1 — Kazal-type serine protease inhibitors
Family Family familyg.68.1.1 — Ovomucoid domain III-like

CATH v4.4 (3 domains)

Domain ID domain_id2sgeE01
Class class2 — Mainly Beta
Architecture architecture40 — Beta Barrel
Topology topology10 — Thrombin, subunit H
Homologous superfamily homologous superfamily10 — Trypsin-like serine proteases
Domain ID domain_id2sgeE02
Class class2 — Mainly Beta
Architecture architecture40 — Beta Barrel
Topology topology10 — Thrombin, subunit H
Homologous superfamily homologous superfamily10 — Trypsin-like serine proteases
Domain ID domain_id2sgeI00
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology60 — Wheat Germ Agglutinin (Isolectin 2); domain 1
Homologous superfamily homologous superfamily30

8. Citations (2)

9. Files and Curves (10)