2gtt

Crystal structure of the rabies virus nucleoprotein-RNA complex

Method: X-RAY DIFFRACTION Dmax: 217.3 Å Quality: GOOD

SAXS 散射曲线 SAXS Profile

SAXS profile for 2gtt

P(r) 距离分布 P(r) Distribution

P(r) distribution for 2gtt
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1. 结构基本信息 1. Structure Basics

条目编号 entry_id2gtt
沉积日期 deposition_date2006-04-28
结构标题 titleCrystal structure of the rabies virus nucleoprotein-RNA complex
关键词 keywordsPROTEIN-RNA COMPLEX, RABIES VIRUS, NUCLEOPROTEIN, VIRAL PROTEIN, RNA BINDING PROTEIN; VIRAL PROTEIN, RNA BINDING PROTEIN
实验方法 methodX-RAY DIFFRACTION

2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)

回转半径 Rg (Guinier) rg_guinier72.69
回转半径 Rg (电子) rg_electron72.72
零角强度 I(0) i017745700000.00
分子量 molecular_weight1100800.0 kDa
排除体积 excluded_volume1362700 ų
包络体积 envelope_volume2240100 ų
水化壳体积 shell_volume245910 ų
包络直径 envelope_diameter207.7
壳层 Rg shell_rg85.57
包络 Rg envelope_rg67.10
形状 Rg shape_rg72.75
总 Rg total_rg72.77
总原子数 total_atoms77284
残基数 n_residues9404
球谐函数阶数 n_harmonics20
q 范围 q_range— – 0.5000 −1
数据点数 n_points101
壳层类型 shell_typedirectional
溶剂电子密度 solvent_density0.3340 e/ų
壳层衬度 contrast_shell0.0300 e/ų
CRYSOL 版本 crysol_version4.1.3

3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)

最大尺寸 Dmax dmax217.3
Rg (实空间) rg_real72.16
Rg 误差 (实空间) rg_real_error1.40
I(0) (实空间) i0_real1.7750e+10
I(0) 误差 (实空间) i0_real_error3.1400e+08
Rg (倒空间) rg_reciprocal74.45
I(0) (倒空间) i0_reciprocal17830000000.0000
解质量估计 total_estimate0.8226
解质量评级 solution_quality GOOD a GOOD solution
P(r) 峰数 n_peaks2
主峰位置 r_peak_primary108.7
偏度 Skewness skewness-0.263
峰度 Kurtosis kurtosis-0.545
角度范围 angular_range— – 0.1100 −1
当前正则化参数 α current_alpha0.0000
最高正则化参数 α highest_alpha3421000000.0000
实空间数据点数 n_real_points23
GNOM 版本 gnom_version4.1.3
质量判据 quality_criteria AN1: 0.000; Oscil: 0.697; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.947; Smooth: 0.651

4. 晶体学与实验 4. Crystallography & Experiment

5. 实体与聚合体信息 (4)

6. 折叠分类 (SCOP + CATH) 66 domains

SCOP 2.08 (22 domains)

结构域编号 domain_idd2gtta1
类 Class classa — All alpha proteins
折叠类型 Fold folda.260 — Rhabdovirus nucleoprotein-like
超家族 Superfamily superfamilya.260.1 — Rhabdovirus nucleoprotein-like
家族 Family familya.260.1.1 — Rhabdovirus nucleocapsid protein
结构域编号 domain_idd2gttb1
类 Class classa — All alpha proteins
折叠类型 Fold folda.260 — Rhabdovirus nucleoprotein-like
超家族 Superfamily superfamilya.260.1 — Rhabdovirus nucleoprotein-like
家族 Family familya.260.1.1 — Rhabdovirus nucleocapsid protein
结构域编号 domain_idd2gttc1
类 Class classa — All alpha proteins
折叠类型 Fold folda.260 — Rhabdovirus nucleoprotein-like
超家族 Superfamily superfamilya.260.1 — Rhabdovirus nucleoprotein-like
家族 Family familya.260.1.1 — Rhabdovirus nucleocapsid protein
结构域编号 domain_idd2gttd1
类 Class classa — All alpha proteins
折叠类型 Fold folda.260 — Rhabdovirus nucleoprotein-like
超家族 Superfamily superfamilya.260.1 — Rhabdovirus nucleoprotein-like
家族 Family familya.260.1.1 — Rhabdovirus nucleocapsid protein
结构域编号 domain_idd2gtte1
类 Class classa — All alpha proteins
折叠类型 Fold folda.260 — Rhabdovirus nucleoprotein-like
超家族 Superfamily superfamilya.260.1 — Rhabdovirus nucleoprotein-like
家族 Family familya.260.1.1 — Rhabdovirus nucleocapsid protein
结构域编号 domain_idd2gttf1
类 Class classa — All alpha proteins
折叠类型 Fold folda.260 — Rhabdovirus nucleoprotein-like
超家族 Superfamily superfamilya.260.1 — Rhabdovirus nucleoprotein-like
家族 Family familya.260.1.1 — Rhabdovirus nucleocapsid protein
结构域编号 domain_idd2gttg1
类 Class classa — All alpha proteins
折叠类型 Fold folda.260 — Rhabdovirus nucleoprotein-like
超家族 Superfamily superfamilya.260.1 — Rhabdovirus nucleoprotein-like
家族 Family familya.260.1.1 — Rhabdovirus nucleocapsid protein
结构域编号 domain_idd2gtth1
类 Class classa — All alpha proteins
折叠类型 Fold folda.260 — Rhabdovirus nucleoprotein-like
超家族 Superfamily superfamilya.260.1 — Rhabdovirus nucleoprotein-like
家族 Family familya.260.1.1 — Rhabdovirus nucleocapsid protein
结构域编号 domain_idd2gtti1
类 Class classa — All alpha proteins
折叠类型 Fold folda.260 — Rhabdovirus nucleoprotein-like
超家族 Superfamily superfamilya.260.1 — Rhabdovirus nucleoprotein-like
家族 Family familya.260.1.1 — Rhabdovirus nucleocapsid protein
结构域编号 domain_idd2gttj1
类 Class classa — All alpha proteins
折叠类型 Fold folda.260 — Rhabdovirus nucleoprotein-like
超家族 Superfamily superfamilya.260.1 — Rhabdovirus nucleoprotein-like
家族 Family familya.260.1.1 — Rhabdovirus nucleocapsid protein
结构域编号 domain_idd2gttk1
类 Class classa — All alpha proteins
折叠类型 Fold folda.260 — Rhabdovirus nucleoprotein-like
超家族 Superfamily superfamilya.260.1 — Rhabdovirus nucleoprotein-like
家族 Family familya.260.1.1 — Rhabdovirus nucleocapsid protein
结构域编号 domain_idd2gttl1
类 Class classa — All alpha proteins
折叠类型 Fold folda.260 — Rhabdovirus nucleoprotein-like
超家族 Superfamily superfamilya.260.1 — Rhabdovirus nucleoprotein-like
家族 Family familya.260.1.1 — Rhabdovirus nucleocapsid protein
结构域编号 domain_idd2gttm1
类 Class classa — All alpha proteins
折叠类型 Fold folda.260 — Rhabdovirus nucleoprotein-like
超家族 Superfamily superfamilya.260.1 — Rhabdovirus nucleoprotein-like
家族 Family familya.260.1.1 — Rhabdovirus nucleocapsid protein
结构域编号 domain_idd2gttn1
类 Class classa — All alpha proteins
折叠类型 Fold folda.260 — Rhabdovirus nucleoprotein-like
超家族 Superfamily superfamilya.260.1 — Rhabdovirus nucleoprotein-like
家族 Family familya.260.1.1 — Rhabdovirus nucleocapsid protein
结构域编号 domain_idd2gtto1
类 Class classa — All alpha proteins
折叠类型 Fold folda.260 — Rhabdovirus nucleoprotein-like
超家族 Superfamily superfamilya.260.1 — Rhabdovirus nucleoprotein-like
家族 Family familya.260.1.1 — Rhabdovirus nucleocapsid protein
结构域编号 domain_idd2gttp1
类 Class classa — All alpha proteins
折叠类型 Fold folda.260 — Rhabdovirus nucleoprotein-like
超家族 Superfamily superfamilya.260.1 — Rhabdovirus nucleoprotein-like
家族 Family familya.260.1.1 — Rhabdovirus nucleocapsid protein
结构域编号 domain_idd2gttq1
类 Class classa — All alpha proteins
折叠类型 Fold folda.260 — Rhabdovirus nucleoprotein-like
超家族 Superfamily superfamilya.260.1 — Rhabdovirus nucleoprotein-like
家族 Family familya.260.1.1 — Rhabdovirus nucleocapsid protein
结构域编号 domain_idd2gttr1
类 Class classa — All alpha proteins
折叠类型 Fold folda.260 — Rhabdovirus nucleoprotein-like
超家族 Superfamily superfamilya.260.1 — Rhabdovirus nucleoprotein-like
家族 Family familya.260.1.1 — Rhabdovirus nucleocapsid protein
结构域编号 domain_idd2gtts1
类 Class classa — All alpha proteins
折叠类型 Fold folda.260 — Rhabdovirus nucleoprotein-like
超家族 Superfamily superfamilya.260.1 — Rhabdovirus nucleoprotein-like
家族 Family familya.260.1.1 — Rhabdovirus nucleocapsid protein
结构域编号 domain_idd2gttt1
类 Class classa — All alpha proteins
折叠类型 Fold folda.260 — Rhabdovirus nucleoprotein-like
超家族 Superfamily superfamilya.260.1 — Rhabdovirus nucleoprotein-like
家族 Family familya.260.1.1 — Rhabdovirus nucleocapsid protein
结构域编号 domain_idd2gttu1
类 Class classa — All alpha proteins
折叠类型 Fold folda.260 — Rhabdovirus nucleoprotein-like
超家族 Superfamily superfamilya.260.1 — Rhabdovirus nucleoprotein-like
家族 Family familya.260.1.1 — Rhabdovirus nucleocapsid protein
结构域编号 domain_idd2gttv1
类 Class classa — All alpha proteins
折叠类型 Fold folda.260 — Rhabdovirus nucleoprotein-like
超家族 Superfamily superfamilya.260.1 — Rhabdovirus nucleoprotein-like
家族 Family familya.260.1.1 — Rhabdovirus nucleocapsid protein

CATH v4.4 (44 domains)

结构域编号 domain_id2gttA01
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology3570 — Rhabdovirus nucleoprotein-like fold
同源超家族 H-superfamily homologous superfamily10 — Rhabdovirus nucleocapsid protein like domain
结构域编号 domain_id2gttA02
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology3610 — Rhabdovirus nucleoprotein-like
同源超家族 H-superfamily homologous superfamily10 — Nucleoprotein
结构域编号 domain_id2gttB01
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology3570 — Rhabdovirus nucleoprotein-like fold
同源超家族 H-superfamily homologous superfamily10 — Rhabdovirus nucleocapsid protein like domain
结构域编号 domain_id2gttB02
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology3610 — Rhabdovirus nucleoprotein-like
同源超家族 H-superfamily homologous superfamily10 — Nucleoprotein
结构域编号 domain_id2gttC01
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology3570 — Rhabdovirus nucleoprotein-like fold
同源超家族 H-superfamily homologous superfamily10 — Rhabdovirus nucleocapsid protein like domain
结构域编号 domain_id2gttC02
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology3610 — Rhabdovirus nucleoprotein-like
同源超家族 H-superfamily homologous superfamily10 — Nucleoprotein
结构域编号 domain_id2gttD01
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology3570 — Rhabdovirus nucleoprotein-like fold
同源超家族 H-superfamily homologous superfamily10 — Rhabdovirus nucleocapsid protein like domain
结构域编号 domain_id2gttD02
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology3610 — Rhabdovirus nucleoprotein-like
同源超家族 H-superfamily homologous superfamily10 — Nucleoprotein
结构域编号 domain_id2gttE01
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology3570 — Rhabdovirus nucleoprotein-like fold
同源超家族 H-superfamily homologous superfamily10 — Rhabdovirus nucleocapsid protein like domain
结构域编号 domain_id2gttE02
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology3610 — Rhabdovirus nucleoprotein-like
同源超家族 H-superfamily homologous superfamily10 — Nucleoprotein
结构域编号 domain_id2gttF01
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology3570 — Rhabdovirus nucleoprotein-like fold
同源超家族 H-superfamily homologous superfamily10 — Rhabdovirus nucleocapsid protein like domain
结构域编号 domain_id2gttF02
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology3610 — Rhabdovirus nucleoprotein-like
同源超家族 H-superfamily homologous superfamily10 — Nucleoprotein
结构域编号 domain_id2gttG01
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology3570 — Rhabdovirus nucleoprotein-like fold
同源超家族 H-superfamily homologous superfamily10 — Rhabdovirus nucleocapsid protein like domain
结构域编号 domain_id2gttG02
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology3610 — Rhabdovirus nucleoprotein-like
同源超家族 H-superfamily homologous superfamily10 — Nucleoprotein
结构域编号 domain_id2gttH01
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology3570 — Rhabdovirus nucleoprotein-like fold
同源超家族 H-superfamily homologous superfamily10 — Rhabdovirus nucleocapsid protein like domain
结构域编号 domain_id2gttH02
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology3610 — Rhabdovirus nucleoprotein-like
同源超家族 H-superfamily homologous superfamily10 — Nucleoprotein
结构域编号 domain_id2gttI01
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology3570 — Rhabdovirus nucleoprotein-like fold
同源超家族 H-superfamily homologous superfamily10 — Rhabdovirus nucleocapsid protein like domain
结构域编号 domain_id2gttI02
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology3610 — Rhabdovirus nucleoprotein-like
同源超家族 H-superfamily homologous superfamily10 — Nucleoprotein
结构域编号 domain_id2gttJ01
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology3570 — Rhabdovirus nucleoprotein-like fold
同源超家族 H-superfamily homologous superfamily10 — Rhabdovirus nucleocapsid protein like domain
结构域编号 domain_id2gttJ02
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology3610 — Rhabdovirus nucleoprotein-like
同源超家族 H-superfamily homologous superfamily10 — Nucleoprotein
结构域编号 domain_id2gttK01
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology3570 — Rhabdovirus nucleoprotein-like fold
同源超家族 H-superfamily homologous superfamily10 — Rhabdovirus nucleocapsid protein like domain
结构域编号 domain_id2gttK02
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology3610 — Rhabdovirus nucleoprotein-like
同源超家族 H-superfamily homologous superfamily10 — Nucleoprotein
结构域编号 domain_id2gttL01
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology3570 — Rhabdovirus nucleoprotein-like fold
同源超家族 H-superfamily homologous superfamily10 — Rhabdovirus nucleocapsid protein like domain
结构域编号 domain_id2gttL02
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology3610 — Rhabdovirus nucleoprotein-like
同源超家族 H-superfamily homologous superfamily10 — Nucleoprotein
结构域编号 domain_id2gttM01
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology3570 — Rhabdovirus nucleoprotein-like fold
同源超家族 H-superfamily homologous superfamily10 — Rhabdovirus nucleocapsid protein like domain
结构域编号 domain_id2gttM02
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology3610 — Rhabdovirus nucleoprotein-like
同源超家族 H-superfamily homologous superfamily10 — Nucleoprotein
结构域编号 domain_id2gttN01
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology3570 — Rhabdovirus nucleoprotein-like fold
同源超家族 H-superfamily homologous superfamily10 — Rhabdovirus nucleocapsid protein like domain
结构域编号 domain_id2gttN02
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology3610 — Rhabdovirus nucleoprotein-like
同源超家族 H-superfamily homologous superfamily10 — Nucleoprotein
结构域编号 domain_id2gttO01
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology3570 — Rhabdovirus nucleoprotein-like fold
同源超家族 H-superfamily homologous superfamily10 — Rhabdovirus nucleocapsid protein like domain
结构域编号 domain_id2gttO02
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology3610 — Rhabdovirus nucleoprotein-like
同源超家族 H-superfamily homologous superfamily10 — Nucleoprotein
结构域编号 domain_id2gttP01
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology3570 — Rhabdovirus nucleoprotein-like fold
同源超家族 H-superfamily homologous superfamily10 — Rhabdovirus nucleocapsid protein like domain
结构域编号 domain_id2gttP02
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology3610 — Rhabdovirus nucleoprotein-like
同源超家族 H-superfamily homologous superfamily10 — Nucleoprotein
结构域编号 domain_id2gttQ01
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology3570 — Rhabdovirus nucleoprotein-like fold
同源超家族 H-superfamily homologous superfamily10 — Rhabdovirus nucleocapsid protein like domain
结构域编号 domain_id2gttQ02
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology3610 — Rhabdovirus nucleoprotein-like
同源超家族 H-superfamily homologous superfamily10 — Nucleoprotein
结构域编号 domain_id2gttR01
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology3570 — Rhabdovirus nucleoprotein-like fold
同源超家族 H-superfamily homologous superfamily10 — Rhabdovirus nucleocapsid protein like domain
结构域编号 domain_id2gttR02
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology3610 — Rhabdovirus nucleoprotein-like
同源超家族 H-superfamily homologous superfamily10 — Nucleoprotein
结构域编号 domain_id2gttS01
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology3570 — Rhabdovirus nucleoprotein-like fold
同源超家族 H-superfamily homologous superfamily10 — Rhabdovirus nucleocapsid protein like domain
结构域编号 domain_id2gttS02
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology3610 — Rhabdovirus nucleoprotein-like
同源超家族 H-superfamily homologous superfamily10 — Nucleoprotein
结构域编号 domain_id2gttT01
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology3570 — Rhabdovirus nucleoprotein-like fold
同源超家族 H-superfamily homologous superfamily10 — Rhabdovirus nucleocapsid protein like domain
结构域编号 domain_id2gttT02
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology3610 — Rhabdovirus nucleoprotein-like
同源超家族 H-superfamily homologous superfamily10 — Nucleoprotein
结构域编号 domain_id2gttU01
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology3570 — Rhabdovirus nucleoprotein-like fold
同源超家族 H-superfamily homologous superfamily10 — Rhabdovirus nucleocapsid protein like domain
结构域编号 domain_id2gttU02
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology3610 — Rhabdovirus nucleoprotein-like
同源超家族 H-superfamily homologous superfamily10 — Nucleoprotein
结构域编号 domain_id2gttV01
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology3570 — Rhabdovirus nucleoprotein-like fold
同源超家族 H-superfamily homologous superfamily10 — Rhabdovirus nucleocapsid protein like domain
结构域编号 domain_id2gttV02
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology3610 — Rhabdovirus nucleoprotein-like
同源超家族 H-superfamily homologous superfamily10 — Nucleoprotein

7. 引用文献 (1)

8. 文件与曲线 (10)