2gtt

Crystal structure of the rabies virus nucleoprotein-RNA complex

Method: X-RAY DIFFRACTION
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Nucleoprotein

Lyssavirus rabies

UniProt A8VR20

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Homooligomer Protein 22 RNA 2 RNA (99-MER) × 1 RNA (99-MER) × 1 PHOSPHATE ION × 2 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A8VR20_9RHAB
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–450; UniProt 1–450 Author chain B; PDBConstruct 1–450; UniProt 1–450 Author chain C; PDBConstruct 1–450; UniProt 1–450 Author chain D; PDBConstruct 1–450; UniProt 1–450 Author chain E; PDBConstruct 1–450; UniProt 1–450 Author chain F; PDBConstruct 1–450; UniProt 1–450 Author chain G; PDBConstruct 1–450; UniProt 1–450 Author chain H; PDBConstruct 1–450; UniProt 1–450 Author chain I; PDBConstruct 1–450; UniProt 1–450 Author chain J; PDBConstruct 1–450; UniProt 1–450 Author chain K; PDBConstruct 1–450; UniProt 1–450 Author chain L; PDBConstruct 1–450; UniProt 1–450 Author chain M; PDBConstruct 1–450; UniProt 1–450 Author chain N; PDBConstruct 1–450; UniProt 1–450 Author chain O; PDBConstruct 1–450; UniProt 1–450 Author chain P; PDBConstruct 1–450; UniProt 1–450 Author chain Q; PDBConstruct 1–450; UniProt 1–450 Author chain R; PDBConstruct 1–450; UniProt 1–450 Author chain S; PDBConstruct 1–450; UniProt 1–450 Author chain T; PDBConstruct 1–450; UniProt 1–450 Author chain U; PDBConstruct 1–450; UniProt 1–450 Author chain V; PDBConstruct 1–450; UniProt 1–450

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id2gtt
Deposition date deposition_date2006-04-28
Structure title titleCrystal structure of the rabies virus nucleoprotein-RNA complex
Keywords keywordsPROTEIN-RNA COMPLEX, RABIES VIRUS, NUCLEOPROTEIN, VIRAL PROTEIN, RNA BINDING PROTEIN; VIRAL PROTEIN, RNA BINDING PROTEIN
Experimental Method methodX-RAY DIFFRACTION
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

2gtt__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

2gtt__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 1010 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

2gtt__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)72.69 Å
Rg (electron density)72.72 Å
Total Rg72.77 Å
Atom count77284
Residues9404
Excluded volume1362700 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 2gtt__assembly_1__model_1 24-meric (24) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (4)

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6. Fold Classification (SCOP + CATH) 66 domains

SCOP 2.08 (22 domains)

Domain ID domain_idd2gtta1
Class classa — All alpha proteins
Fold Fold folda.260 — Rhabdovirus nucleoprotein-like
Superfamily Superfamily superfamilya.260.1 — Rhabdovirus nucleoprotein-like
Family Family familya.260.1.1 — Rhabdovirus nucleocapsid protein
Domain ID domain_idd2gttb1
Class classa — All alpha proteins
Fold Fold folda.260 — Rhabdovirus nucleoprotein-like
Superfamily Superfamily superfamilya.260.1 — Rhabdovirus nucleoprotein-like
Family Family familya.260.1.1 — Rhabdovirus nucleocapsid protein
Domain ID domain_idd2gttc1
Class classa — All alpha proteins
Fold Fold folda.260 — Rhabdovirus nucleoprotein-like
Superfamily Superfamily superfamilya.260.1 — Rhabdovirus nucleoprotein-like
Family Family familya.260.1.1 — Rhabdovirus nucleocapsid protein
Domain ID domain_idd2gttd1
Class classa — All alpha proteins
Fold Fold folda.260 — Rhabdovirus nucleoprotein-like
Superfamily Superfamily superfamilya.260.1 — Rhabdovirus nucleoprotein-like
Family Family familya.260.1.1 — Rhabdovirus nucleocapsid protein
Domain ID domain_idd2gtte1
Class classa — All alpha proteins
Fold Fold folda.260 — Rhabdovirus nucleoprotein-like
Superfamily Superfamily superfamilya.260.1 — Rhabdovirus nucleoprotein-like
Family Family familya.260.1.1 — Rhabdovirus nucleocapsid protein
Domain ID domain_idd2gttf1
Class classa — All alpha proteins
Fold Fold folda.260 — Rhabdovirus nucleoprotein-like
Superfamily Superfamily superfamilya.260.1 — Rhabdovirus nucleoprotein-like
Family Family familya.260.1.1 — Rhabdovirus nucleocapsid protein
Domain ID domain_idd2gttg1
Class classa — All alpha proteins
Fold Fold folda.260 — Rhabdovirus nucleoprotein-like
Superfamily Superfamily superfamilya.260.1 — Rhabdovirus nucleoprotein-like
Family Family familya.260.1.1 — Rhabdovirus nucleocapsid protein
Domain ID domain_idd2gtth1
Class classa — All alpha proteins
Fold Fold folda.260 — Rhabdovirus nucleoprotein-like
Superfamily Superfamily superfamilya.260.1 — Rhabdovirus nucleoprotein-like
Family Family familya.260.1.1 — Rhabdovirus nucleocapsid protein
Domain ID domain_idd2gtti1
Class classa — All alpha proteins
Fold Fold folda.260 — Rhabdovirus nucleoprotein-like
Superfamily Superfamily superfamilya.260.1 — Rhabdovirus nucleoprotein-like
Family Family familya.260.1.1 — Rhabdovirus nucleocapsid protein
Domain ID domain_idd2gttj1
Class classa — All alpha proteins
Fold Fold folda.260 — Rhabdovirus nucleoprotein-like
Superfamily Superfamily superfamilya.260.1 — Rhabdovirus nucleoprotein-like
Family Family familya.260.1.1 — Rhabdovirus nucleocapsid protein
Domain ID domain_idd2gttk1
Class classa — All alpha proteins
Fold Fold folda.260 — Rhabdovirus nucleoprotein-like
Superfamily Superfamily superfamilya.260.1 — Rhabdovirus nucleoprotein-like
Family Family familya.260.1.1 — Rhabdovirus nucleocapsid protein
Domain ID domain_idd2gttl1
Class classa — All alpha proteins
Fold Fold folda.260 — Rhabdovirus nucleoprotein-like
Superfamily Superfamily superfamilya.260.1 — Rhabdovirus nucleoprotein-like
Family Family familya.260.1.1 — Rhabdovirus nucleocapsid protein
Domain ID domain_idd2gttm1
Class classa — All alpha proteins
Fold Fold folda.260 — Rhabdovirus nucleoprotein-like
Superfamily Superfamily superfamilya.260.1 — Rhabdovirus nucleoprotein-like
Family Family familya.260.1.1 — Rhabdovirus nucleocapsid protein
Domain ID domain_idd2gttn1
Class classa — All alpha proteins
Fold Fold folda.260 — Rhabdovirus nucleoprotein-like
Superfamily Superfamily superfamilya.260.1 — Rhabdovirus nucleoprotein-like
Family Family familya.260.1.1 — Rhabdovirus nucleocapsid protein
Domain ID domain_idd2gtto1
Class classa — All alpha proteins
Fold Fold folda.260 — Rhabdovirus nucleoprotein-like
Superfamily Superfamily superfamilya.260.1 — Rhabdovirus nucleoprotein-like
Family Family familya.260.1.1 — Rhabdovirus nucleocapsid protein
Domain ID domain_idd2gttp1
Class classa — All alpha proteins
Fold Fold folda.260 — Rhabdovirus nucleoprotein-like
Superfamily Superfamily superfamilya.260.1 — Rhabdovirus nucleoprotein-like
Family Family familya.260.1.1 — Rhabdovirus nucleocapsid protein
Domain ID domain_idd2gttq1
Class classa — All alpha proteins
Fold Fold folda.260 — Rhabdovirus nucleoprotein-like
Superfamily Superfamily superfamilya.260.1 — Rhabdovirus nucleoprotein-like
Family Family familya.260.1.1 — Rhabdovirus nucleocapsid protein
Domain ID domain_idd2gttr1
Class classa — All alpha proteins
Fold Fold folda.260 — Rhabdovirus nucleoprotein-like
Superfamily Superfamily superfamilya.260.1 — Rhabdovirus nucleoprotein-like
Family Family familya.260.1.1 — Rhabdovirus nucleocapsid protein
Domain ID domain_idd2gtts1
Class classa — All alpha proteins
Fold Fold folda.260 — Rhabdovirus nucleoprotein-like
Superfamily Superfamily superfamilya.260.1 — Rhabdovirus nucleoprotein-like
Family Family familya.260.1.1 — Rhabdovirus nucleocapsid protein
Domain ID domain_idd2gttt1
Class classa — All alpha proteins
Fold Fold folda.260 — Rhabdovirus nucleoprotein-like
Superfamily Superfamily superfamilya.260.1 — Rhabdovirus nucleoprotein-like
Family Family familya.260.1.1 — Rhabdovirus nucleocapsid protein
Domain ID domain_idd2gttu1
Class classa — All alpha proteins
Fold Fold folda.260 — Rhabdovirus nucleoprotein-like
Superfamily Superfamily superfamilya.260.1 — Rhabdovirus nucleoprotein-like
Family Family familya.260.1.1 — Rhabdovirus nucleocapsid protein
Domain ID domain_idd2gttv1
Class classa — All alpha proteins
Fold Fold folda.260 — Rhabdovirus nucleoprotein-like
Superfamily Superfamily superfamilya.260.1 — Rhabdovirus nucleoprotein-like
Family Family familya.260.1.1 — Rhabdovirus nucleocapsid protein

CATH v4.4 (44 domains)

Domain ID domain_id2gttA01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3570 — Rhabdovirus nucleoprotein-like fold
Homologous superfamily homologous superfamily10 — Rhabdovirus nucleocapsid protein like domain
Domain ID domain_id2gttA02
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3610 — Rhabdovirus nucleoprotein-like
Homologous superfamily homologous superfamily10 — Nucleoprotein
Domain ID domain_id2gttB01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3570 — Rhabdovirus nucleoprotein-like fold
Homologous superfamily homologous superfamily10 — Rhabdovirus nucleocapsid protein like domain
Domain ID domain_id2gttB02
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3610 — Rhabdovirus nucleoprotein-like
Homologous superfamily homologous superfamily10 — Nucleoprotein
Domain ID domain_id2gttC01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3570 — Rhabdovirus nucleoprotein-like fold
Homologous superfamily homologous superfamily10 — Rhabdovirus nucleocapsid protein like domain
Domain ID domain_id2gttC02
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3610 — Rhabdovirus nucleoprotein-like
Homologous superfamily homologous superfamily10 — Nucleoprotein
Domain ID domain_id2gttD01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3570 — Rhabdovirus nucleoprotein-like fold
Homologous superfamily homologous superfamily10 — Rhabdovirus nucleocapsid protein like domain
Domain ID domain_id2gttD02
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3610 — Rhabdovirus nucleoprotein-like
Homologous superfamily homologous superfamily10 — Nucleoprotein
Domain ID domain_id2gttE01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3570 — Rhabdovirus nucleoprotein-like fold
Homologous superfamily homologous superfamily10 — Rhabdovirus nucleocapsid protein like domain
Domain ID domain_id2gttE02
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3610 — Rhabdovirus nucleoprotein-like
Homologous superfamily homologous superfamily10 — Nucleoprotein
Domain ID domain_id2gttF01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3570 — Rhabdovirus nucleoprotein-like fold
Homologous superfamily homologous superfamily10 — Rhabdovirus nucleocapsid protein like domain
Domain ID domain_id2gttF02
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3610 — Rhabdovirus nucleoprotein-like
Homologous superfamily homologous superfamily10 — Nucleoprotein
Domain ID domain_id2gttG01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3570 — Rhabdovirus nucleoprotein-like fold
Homologous superfamily homologous superfamily10 — Rhabdovirus nucleocapsid protein like domain
Domain ID domain_id2gttG02
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3610 — Rhabdovirus nucleoprotein-like
Homologous superfamily homologous superfamily10 — Nucleoprotein
Domain ID domain_id2gttH01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3570 — Rhabdovirus nucleoprotein-like fold
Homologous superfamily homologous superfamily10 — Rhabdovirus nucleocapsid protein like domain
Domain ID domain_id2gttH02
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3610 — Rhabdovirus nucleoprotein-like
Homologous superfamily homologous superfamily10 — Nucleoprotein
Domain ID domain_id2gttI01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3570 — Rhabdovirus nucleoprotein-like fold
Homologous superfamily homologous superfamily10 — Rhabdovirus nucleocapsid protein like domain
Domain ID domain_id2gttI02
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3610 — Rhabdovirus nucleoprotein-like
Homologous superfamily homologous superfamily10 — Nucleoprotein
Domain ID domain_id2gttJ01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3570 — Rhabdovirus nucleoprotein-like fold
Homologous superfamily homologous superfamily10 — Rhabdovirus nucleocapsid protein like domain
Domain ID domain_id2gttJ02
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3610 — Rhabdovirus nucleoprotein-like
Homologous superfamily homologous superfamily10 — Nucleoprotein
Domain ID domain_id2gttK01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3570 — Rhabdovirus nucleoprotein-like fold
Homologous superfamily homologous superfamily10 — Rhabdovirus nucleocapsid protein like domain
Domain ID domain_id2gttK02
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3610 — Rhabdovirus nucleoprotein-like
Homologous superfamily homologous superfamily10 — Nucleoprotein
Domain ID domain_id2gttL01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3570 — Rhabdovirus nucleoprotein-like fold
Homologous superfamily homologous superfamily10 — Rhabdovirus nucleocapsid protein like domain
Domain ID domain_id2gttL02
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3610 — Rhabdovirus nucleoprotein-like
Homologous superfamily homologous superfamily10 — Nucleoprotein
Domain ID domain_id2gttM01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3570 — Rhabdovirus nucleoprotein-like fold
Homologous superfamily homologous superfamily10 — Rhabdovirus nucleocapsid protein like domain
Domain ID domain_id2gttM02
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3610 — Rhabdovirus nucleoprotein-like
Homologous superfamily homologous superfamily10 — Nucleoprotein
Domain ID domain_id2gttN01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3570 — Rhabdovirus nucleoprotein-like fold
Homologous superfamily homologous superfamily10 — Rhabdovirus nucleocapsid protein like domain
Domain ID domain_id2gttN02
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3610 — Rhabdovirus nucleoprotein-like
Homologous superfamily homologous superfamily10 — Nucleoprotein
Domain ID domain_id2gttO01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3570 — Rhabdovirus nucleoprotein-like fold
Homologous superfamily homologous superfamily10 — Rhabdovirus nucleocapsid protein like domain
Domain ID domain_id2gttO02
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3610 — Rhabdovirus nucleoprotein-like
Homologous superfamily homologous superfamily10 — Nucleoprotein
Domain ID domain_id2gttP01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3570 — Rhabdovirus nucleoprotein-like fold
Homologous superfamily homologous superfamily10 — Rhabdovirus nucleocapsid protein like domain
Domain ID domain_id2gttP02
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3610 — Rhabdovirus nucleoprotein-like
Homologous superfamily homologous superfamily10 — Nucleoprotein
Domain ID domain_id2gttQ01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3570 — Rhabdovirus nucleoprotein-like fold
Homologous superfamily homologous superfamily10 — Rhabdovirus nucleocapsid protein like domain
Domain ID domain_id2gttQ02
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3610 — Rhabdovirus nucleoprotein-like
Homologous superfamily homologous superfamily10 — Nucleoprotein
Domain ID domain_id2gttR01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3570 — Rhabdovirus nucleoprotein-like fold
Homologous superfamily homologous superfamily10 — Rhabdovirus nucleocapsid protein like domain
Domain ID domain_id2gttR02
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3610 — Rhabdovirus nucleoprotein-like
Homologous superfamily homologous superfamily10 — Nucleoprotein
Domain ID domain_id2gttS01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3570 — Rhabdovirus nucleoprotein-like fold
Homologous superfamily homologous superfamily10 — Rhabdovirus nucleocapsid protein like domain
Domain ID domain_id2gttS02
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3610 — Rhabdovirus nucleoprotein-like
Homologous superfamily homologous superfamily10 — Nucleoprotein
Domain ID domain_id2gttT01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3570 — Rhabdovirus nucleoprotein-like fold
Homologous superfamily homologous superfamily10 — Rhabdovirus nucleocapsid protein like domain
Domain ID domain_id2gttT02
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3610 — Rhabdovirus nucleoprotein-like
Homologous superfamily homologous superfamily10 — Nucleoprotein
Domain ID domain_id2gttU01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3570 — Rhabdovirus nucleoprotein-like fold
Homologous superfamily homologous superfamily10 — Rhabdovirus nucleocapsid protein like domain
Domain ID domain_id2gttU02
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3610 — Rhabdovirus nucleoprotein-like
Homologous superfamily homologous superfamily10 — Nucleoprotein
Domain ID domain_id2gttV01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3570 — Rhabdovirus nucleoprotein-like fold
Homologous superfamily homologous superfamily10 — Rhabdovirus nucleocapsid protein like domain
Domain ID domain_id2gttV02
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3610 — Rhabdovirus nucleoprotein-like
Homologous superfamily homologous superfamily10 — Nucleoprotein
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7. Citations (1)