2hg4

Structure of the ketosynthase-acyltransferase didomain of module 5 from DEBS.

Method: X-RAY DIFFRACTION Dmax: 268.6 Å Quality: GOOD

SAXS 散射曲线 SAXS Profile

SAXS profile for 2hg4

P(r) 距离分布 P(r) Distribution

P(r) distribution for 2hg4
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1. 结构基本信息 1. Structure Basics

条目编号 entry_id2hg4
沉积日期 deposition_date2006-06-26
结构标题 titleStructure of the ketosynthase-acyltransferase didomain of module 5 from DEBS.
关键词 keywordsketosynthase, acyltransferase, module 5, DEBS, TRANSFERASE; TRANSFERASE
实验方法 methodX-RAY DIFFRACTION

2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)

回转半径 Rg (Guinier) rg_guinier74.58
回转半径 Rg (电子) rg_electron74.77
零角强度 I(0) i04881140000.00
分子量 molecular_weight559740.0 kDa
排除体积 excluded_volume686660 ų
包络体积 envelope_volume1101300 ų
水化壳体积 shell_volume128180 ų
包络直径 envelope_diameter272.6
壳层 Rg shell_rg68.80
包络 Rg envelope_rg71.92
形状 Rg shape_rg74.79
总 Rg total_rg74.62
总原子数 total_atoms39092
残基数 n_residues5190
球谐函数阶数 n_harmonics20
q 范围 q_range— – 0.5000 −1
数据点数 n_points101
壳层类型 shell_typedirectional
溶剂电子密度 solvent_density0.3340 e/ų
壳层衬度 contrast_shell0.0300 e/ų
CRYSOL 版本 crysol_version4.1.3

3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)

最大尺寸 Dmax dmax268.6
Rg (实空间) rg_real74.70
Rg 误差 (实空间) rg_real_error4.16
I(0) (实空间) i0_real4.8810e+09
I(0) 误差 (实空间) i0_real_error1.1190e+08
Rg (倒空间) rg_reciprocal73.96
I(0) (倒空间) i0_reciprocal4873000000.0000
解质量估计 total_estimate0.8626
解质量评级 solution_quality GOOD a GOOD solution
P(r) 峰数 n_peaks2
主峰位置 r_peak_primary76.7
偏度 Skewness skewness0.293
峰度 Kurtosis kurtosis-0.487
角度范围 angular_range— – 0.1050 −1
当前正则化参数 α current_alpha0.0000
最高正则化参数 α highest_alpha119200000.0000
实空间数据点数 n_real_points22
GNOM 版本 gnom_version4.1.3
质量判据 quality_criteria AN1: 0.000; Oscil: 0.809; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 1.000; Smooth: 0.781

4. 晶体学与实验 4. Crystallography & Experiment

5. 实体与聚合体信息 (5)

6. 折叠分类 (SCOP + CATH) 60 domains

SCOP 2.08 (42 domains)

结构域编号 domain_idd2hg4a1
类 Class classh — Coiled coil proteins
折叠类型 Fold foldh.1 — Parallel coiled-coil
超家族 Superfamily superfamilyh.1.38 — N-terminal linker of 6-deoxyerythronolide B synthase (DEBS)
家族 Family familyh.1.38.1 — N-terminal linker of 6-deoxyerythronolide B synthase (DEBS)
结构域编号 domain_idd2hg4a2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.95 — Thiolase-like
超家族 Superfamily superfamilyc.95.1 — Thiolase-like
家族 Family familyc.95.1.1 — Thiolase-related
结构域编号 domain_idd2hg4a3
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.95 — Thiolase-like
超家族 Superfamily superfamilyc.95.1 — Thiolase-like
家族 Family familyc.95.1.1 — Thiolase-related
结构域编号 domain_idd2hg4a4
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.390 — KS-to-AT linker domain from 6-deoxyerythronolide B synthase (DEBS)-like
超家族 Superfamily superfamilyd.390.1 — KS-to-AT linker domain from 6-deoxyerythronolide B synthase (DEBS)-like
家族 Family familyd.390.1.1 — KS-to-AT linker domain from 6-deoxyerythronolide B synthase (DEBS)-like
结构域编号 domain_idd2hg4a5
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.58 — Ferredoxin-like
超家族 Superfamily superfamilyd.58.23 — Probable ACP-binding domain of malonyl-CoA ACP transacylase
家族 Family familyd.58.23.1 — Probable ACP-binding domain of malonyl-CoA ACP transacylase
结构域编号 domain_idd2hg4a6
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.19 — FabD/lysophospholipase-like
超家族 Superfamily superfamilyc.19.1 — FabD/lysophospholipase-like
家族 Family familyc.19.1.1 — FabD-like
结构域编号 domain_idd2hg4a7
类 Class classj — Peptides
折叠类型 Fold foldj.134 — C-terminal linker of 6-deoxyerythronolide B synthase (DEBS)-like
超家族 Superfamily superfamilyj.134.1 — C-terminal linker of 6-deoxyerythronolide B synthase (DEBS)-like
家族 Family familyj.134.1.1 — C-terminal linker of 6-deoxyerythronolide B synthase (DEBS)-like
结构域编号 domain_idd2hg4b1
类 Class classh — Coiled coil proteins
折叠类型 Fold foldh.1 — Parallel coiled-coil
超家族 Superfamily superfamilyh.1.38 — N-terminal linker of 6-deoxyerythronolide B synthase (DEBS)
家族 Family familyh.1.38.1 — N-terminal linker of 6-deoxyerythronolide B synthase (DEBS)
结构域编号 domain_idd2hg4b2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.95 — Thiolase-like
超家族 Superfamily superfamilyc.95.1 — Thiolase-like
家族 Family familyc.95.1.1 — Thiolase-related
结构域编号 domain_idd2hg4b3
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.95 — Thiolase-like
超家族 Superfamily superfamilyc.95.1 — Thiolase-like
家族 Family familyc.95.1.1 — Thiolase-related
结构域编号 domain_idd2hg4b4
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.390 — KS-to-AT linker domain from 6-deoxyerythronolide B synthase (DEBS)-like
超家族 Superfamily superfamilyd.390.1 — KS-to-AT linker domain from 6-deoxyerythronolide B synthase (DEBS)-like
家族 Family familyd.390.1.1 — KS-to-AT linker domain from 6-deoxyerythronolide B synthase (DEBS)-like
结构域编号 domain_idd2hg4b5
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.58 — Ferredoxin-like
超家族 Superfamily superfamilyd.58.23 — Probable ACP-binding domain of malonyl-CoA ACP transacylase
家族 Family familyd.58.23.1 — Probable ACP-binding domain of malonyl-CoA ACP transacylase
结构域编号 domain_idd2hg4b6
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.19 — FabD/lysophospholipase-like
超家族 Superfamily superfamilyc.19.1 — FabD/lysophospholipase-like
家族 Family familyc.19.1.1 — FabD-like
结构域编号 domain_idd2hg4b7
类 Class classj — Peptides
折叠类型 Fold foldj.134 — C-terminal linker of 6-deoxyerythronolide B synthase (DEBS)-like
超家族 Superfamily superfamilyj.134.1 — C-terminal linker of 6-deoxyerythronolide B synthase (DEBS)-like
家族 Family familyj.134.1.1 — C-terminal linker of 6-deoxyerythronolide B synthase (DEBS)-like
结构域编号 domain_idd2hg4c1
类 Class classh — Coiled coil proteins
折叠类型 Fold foldh.1 — Parallel coiled-coil
超家族 Superfamily superfamilyh.1.38 — N-terminal linker of 6-deoxyerythronolide B synthase (DEBS)
家族 Family familyh.1.38.1 — N-terminal linker of 6-deoxyerythronolide B synthase (DEBS)
结构域编号 domain_idd2hg4c2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.95 — Thiolase-like
超家族 Superfamily superfamilyc.95.1 — Thiolase-like
家族 Family familyc.95.1.1 — Thiolase-related
结构域编号 domain_idd2hg4c3
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.95 — Thiolase-like
超家族 Superfamily superfamilyc.95.1 — Thiolase-like
家族 Family familyc.95.1.1 — Thiolase-related
结构域编号 domain_idd2hg4c4
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.390 — KS-to-AT linker domain from 6-deoxyerythronolide B synthase (DEBS)-like
超家族 Superfamily superfamilyd.390.1 — KS-to-AT linker domain from 6-deoxyerythronolide B synthase (DEBS)-like
家族 Family familyd.390.1.1 — KS-to-AT linker domain from 6-deoxyerythronolide B synthase (DEBS)-like
结构域编号 domain_idd2hg4c5
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.58 — Ferredoxin-like
超家族 Superfamily superfamilyd.58.23 — Probable ACP-binding domain of malonyl-CoA ACP transacylase
家族 Family familyd.58.23.1 — Probable ACP-binding domain of malonyl-CoA ACP transacylase
结构域编号 domain_idd2hg4c6
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.19 — FabD/lysophospholipase-like
超家族 Superfamily superfamilyc.19.1 — FabD/lysophospholipase-like
家族 Family familyc.19.1.1 — FabD-like
结构域编号 domain_idd2hg4c7
类 Class classj — Peptides
折叠类型 Fold foldj.134 — C-terminal linker of 6-deoxyerythronolide B synthase (DEBS)-like
超家族 Superfamily superfamilyj.134.1 — C-terminal linker of 6-deoxyerythronolide B synthase (DEBS)-like
家族 Family familyj.134.1.1 — C-terminal linker of 6-deoxyerythronolide B synthase (DEBS)-like
结构域编号 domain_idd2hg4d1
类 Class classh — Coiled coil proteins
折叠类型 Fold foldh.1 — Parallel coiled-coil
超家族 Superfamily superfamilyh.1.38 — N-terminal linker of 6-deoxyerythronolide B synthase (DEBS)
家族 Family familyh.1.38.1 — N-terminal linker of 6-deoxyerythronolide B synthase (DEBS)
结构域编号 domain_idd2hg4d2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.95 — Thiolase-like
超家族 Superfamily superfamilyc.95.1 — Thiolase-like
家族 Family familyc.95.1.1 — Thiolase-related
结构域编号 domain_idd2hg4d3
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.95 — Thiolase-like
超家族 Superfamily superfamilyc.95.1 — Thiolase-like
家族 Family familyc.95.1.1 — Thiolase-related
结构域编号 domain_idd2hg4d4
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.390 — KS-to-AT linker domain from 6-deoxyerythronolide B synthase (DEBS)-like
超家族 Superfamily superfamilyd.390.1 — KS-to-AT linker domain from 6-deoxyerythronolide B synthase (DEBS)-like
家族 Family familyd.390.1.1 — KS-to-AT linker domain from 6-deoxyerythronolide B synthase (DEBS)-like
结构域编号 domain_idd2hg4d5
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.58 — Ferredoxin-like
超家族 Superfamily superfamilyd.58.23 — Probable ACP-binding domain of malonyl-CoA ACP transacylase
家族 Family familyd.58.23.1 — Probable ACP-binding domain of malonyl-CoA ACP transacylase
结构域编号 domain_idd2hg4d6
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.19 — FabD/lysophospholipase-like
超家族 Superfamily superfamilyc.19.1 — FabD/lysophospholipase-like
家族 Family familyc.19.1.1 — FabD-like
结构域编号 domain_idd2hg4d7
类 Class classj — Peptides
折叠类型 Fold foldj.134 — C-terminal linker of 6-deoxyerythronolide B synthase (DEBS)-like
超家族 Superfamily superfamilyj.134.1 — C-terminal linker of 6-deoxyerythronolide B synthase (DEBS)-like
家族 Family familyj.134.1.1 — C-terminal linker of 6-deoxyerythronolide B synthase (DEBS)-like
结构域编号 domain_idd2hg4e1
类 Class classh — Coiled coil proteins
折叠类型 Fold foldh.1 — Parallel coiled-coil
超家族 Superfamily superfamilyh.1.38 — N-terminal linker of 6-deoxyerythronolide B synthase (DEBS)
家族 Family familyh.1.38.1 — N-terminal linker of 6-deoxyerythronolide B synthase (DEBS)
结构域编号 domain_idd2hg4e2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.95 — Thiolase-like
超家族 Superfamily superfamilyc.95.1 — Thiolase-like
家族 Family familyc.95.1.1 — Thiolase-related
结构域编号 domain_idd2hg4e3
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.95 — Thiolase-like
超家族 Superfamily superfamilyc.95.1 — Thiolase-like
家族 Family familyc.95.1.1 — Thiolase-related
结构域编号 domain_idd2hg4e4
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.390 — KS-to-AT linker domain from 6-deoxyerythronolide B synthase (DEBS)-like
超家族 Superfamily superfamilyd.390.1 — KS-to-AT linker domain from 6-deoxyerythronolide B synthase (DEBS)-like
家族 Family familyd.390.1.1 — KS-to-AT linker domain from 6-deoxyerythronolide B synthase (DEBS)-like
结构域编号 domain_idd2hg4e5
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.58 — Ferredoxin-like
超家族 Superfamily superfamilyd.58.23 — Probable ACP-binding domain of malonyl-CoA ACP transacylase
家族 Family familyd.58.23.1 — Probable ACP-binding domain of malonyl-CoA ACP transacylase
结构域编号 domain_idd2hg4e6
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.19 — FabD/lysophospholipase-like
超家族 Superfamily superfamilyc.19.1 — FabD/lysophospholipase-like
家族 Family familyc.19.1.1 — FabD-like
结构域编号 domain_idd2hg4e7
类 Class classj — Peptides
折叠类型 Fold foldj.134 — C-terminal linker of 6-deoxyerythronolide B synthase (DEBS)-like
超家族 Superfamily superfamilyj.134.1 — C-terminal linker of 6-deoxyerythronolide B synthase (DEBS)-like
家族 Family familyj.134.1.1 — C-terminal linker of 6-deoxyerythronolide B synthase (DEBS)-like
结构域编号 domain_idd2hg4f1
类 Class classh — Coiled coil proteins
折叠类型 Fold foldh.1 — Parallel coiled-coil
超家族 Superfamily superfamilyh.1.38 — N-terminal linker of 6-deoxyerythronolide B synthase (DEBS)
家族 Family familyh.1.38.1 — N-terminal linker of 6-deoxyerythronolide B synthase (DEBS)
结构域编号 domain_idd2hg4f2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.95 — Thiolase-like
超家族 Superfamily superfamilyc.95.1 — Thiolase-like
家族 Family familyc.95.1.1 — Thiolase-related
结构域编号 domain_idd2hg4f3
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.95 — Thiolase-like
超家族 Superfamily superfamilyc.95.1 — Thiolase-like
家族 Family familyc.95.1.1 — Thiolase-related
结构域编号 domain_idd2hg4f4
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.390 — KS-to-AT linker domain from 6-deoxyerythronolide B synthase (DEBS)-like
超家族 Superfamily superfamilyd.390.1 — KS-to-AT linker domain from 6-deoxyerythronolide B synthase (DEBS)-like
家族 Family familyd.390.1.1 — KS-to-AT linker domain from 6-deoxyerythronolide B synthase (DEBS)-like
结构域编号 domain_idd2hg4f5
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.58 — Ferredoxin-like
超家族 Superfamily superfamilyd.58.23 — Probable ACP-binding domain of malonyl-CoA ACP transacylase
家族 Family familyd.58.23.1 — Probable ACP-binding domain of malonyl-CoA ACP transacylase
结构域编号 domain_idd2hg4f6
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.19 — FabD/lysophospholipase-like
超家族 Superfamily superfamilyc.19.1 — FabD/lysophospholipase-like
家族 Family familyc.19.1.1 — FabD-like
结构域编号 domain_idd2hg4f7
类 Class classj — Peptides
折叠类型 Fold foldj.134 — C-terminal linker of 6-deoxyerythronolide B synthase (DEBS)-like
超家族 Superfamily superfamilyj.134.1 — C-terminal linker of 6-deoxyerythronolide B synthase (DEBS)-like
家族 Family familyj.134.1.1 — C-terminal linker of 6-deoxyerythronolide B synthase (DEBS)-like

CATH v4.4 (18 domains)

结构域编号 domain_id2hg4A01
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology47 — Peroxisomal Thiolase; Chain A, domain 1
同源超家族 H-superfamily homologous superfamily10 — Thiolase/Chalcone synthase
结构域编号 domain_id2hg4A02
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology70 — Alpha-Beta Plaits
同源超家族 H-superfamily homologous superfamily3290
结构域编号 domain_id2hg4A03
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology366 — Malonyl-Coenzyme A Acyl Carrier Protein; domain 2
同源超家族 H-superfamily homologous superfamily10 — Malonyl-Coenzyme A Acyl Carrier Protein, domain 2
结构域编号 domain_id2hg4B01
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology47 — Peroxisomal Thiolase; Chain A, domain 1
同源超家族 H-superfamily homologous superfamily10 — Thiolase/Chalcone synthase
结构域编号 domain_id2hg4B02
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology70 — Alpha-Beta Plaits
同源超家族 H-superfamily homologous superfamily3290
结构域编号 domain_id2hg4B03
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology366 — Malonyl-Coenzyme A Acyl Carrier Protein; domain 2
同源超家族 H-superfamily homologous superfamily10 — Malonyl-Coenzyme A Acyl Carrier Protein, domain 2
结构域编号 domain_id2hg4C01
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology47 — Peroxisomal Thiolase; Chain A, domain 1
同源超家族 H-superfamily homologous superfamily10 — Thiolase/Chalcone synthase
结构域编号 domain_id2hg4C02
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology70 — Alpha-Beta Plaits
同源超家族 H-superfamily homologous superfamily3290
结构域编号 domain_id2hg4C03
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology366 — Malonyl-Coenzyme A Acyl Carrier Protein; domain 2
同源超家族 H-superfamily homologous superfamily10 — Malonyl-Coenzyme A Acyl Carrier Protein, domain 2
结构域编号 domain_id2hg4D01
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology47 — Peroxisomal Thiolase; Chain A, domain 1
同源超家族 H-superfamily homologous superfamily10 — Thiolase/Chalcone synthase
结构域编号 domain_id2hg4D02
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology70 — Alpha-Beta Plaits
同源超家族 H-superfamily homologous superfamily3290
结构域编号 domain_id2hg4D03
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology366 — Malonyl-Coenzyme A Acyl Carrier Protein; domain 2
同源超家族 H-superfamily homologous superfamily10 — Malonyl-Coenzyme A Acyl Carrier Protein, domain 2
结构域编号 domain_id2hg4E01
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology47 — Peroxisomal Thiolase; Chain A, domain 1
同源超家族 H-superfamily homologous superfamily10 — Thiolase/Chalcone synthase
结构域编号 domain_id2hg4E02
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology70 — Alpha-Beta Plaits
同源超家族 H-superfamily homologous superfamily3290
结构域编号 domain_id2hg4E03
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology366 — Malonyl-Coenzyme A Acyl Carrier Protein; domain 2
同源超家族 H-superfamily homologous superfamily10 — Malonyl-Coenzyme A Acyl Carrier Protein, domain 2
结构域编号 domain_id2hg4F01
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology47 — Peroxisomal Thiolase; Chain A, domain 1
同源超家族 H-superfamily homologous superfamily10 — Thiolase/Chalcone synthase
结构域编号 domain_id2hg4F02
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology70 — Alpha-Beta Plaits
同源超家族 H-superfamily homologous superfamily3290
结构域编号 domain_id2hg4F03
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology366 — Malonyl-Coenzyme A Acyl Carrier Protein; domain 2
同源超家族 H-superfamily homologous superfamily10 — Malonyl-Coenzyme A Acyl Carrier Protein, domain 2

7. 引用文献 (3)

8. 文件与曲线 (10)