2hg4

Structure of the ketosynthase-acyltransferase didomain of module 5 from DEBS.

Method: X-RAY DIFFRACTION
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1. Protein Identity and Related Structures Protein Identity & Related Structures

6-Deoxyerythronolide B Synthase

Saccharopolyspora erythraea

UniProt Q5UNP4

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein homooligomer Homooligomer Protein 2 ACETATE ION × 2 SULFATE ION × 2 CHLORIDE ION × 1 water × 2 Consistent with protein count
2 Protein homooligomer Homooligomer Protein 2 ACETATE ION × 2 SULFATE ION × 1 CHLORIDE ION × 2 water × 2 Consistent with protein count
3 Protein homooligomer Homooligomer Protein 2 ACETATE ION × 2 SULFATE ION × 2 CHLORIDE ION × 2 water × 2 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name Q5UNP4_SACER
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–917; UniProt 1–917 Author chain B; PDBConstruct 1–917; UniProt 1–917 Author chain C; PDBConstruct 1–917; UniProt 1–917 Author chain D; PDBConstruct 1–917; UniProt 1–917 Author chain E; PDBConstruct 1–917; UniProt 1–917 Author chain F; PDBConstruct 1–917; UniProt 1–917

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id2hg4
Deposition date deposition_date2006-06-26
Structure title titleStructure of the ketosynthase-acyltransferase didomain of module 5 from DEBS.
Keywords keywordsketosynthase, acyltransferase, module 5, DEBS, TRANSFERASE; TRANSFERASE
Experimental Method methodX-RAY DIFFRACTION
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

2hg4__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

2hg4__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

2hg4__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)47.87 Å
Rg (electron density)49.09 Å
Total Rg48.82 Å
Atom count13073
Residues1734
Excluded volume229630 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 2hg4__assembly_1__model_1 dimeric (2) Success 4.1.3-1-20251215 (887e7ef) View Download
2 1 2hg4__assembly_2__model_1 dimeric (2) Success 4.1.3-1-20251215 (887e7ef) View Download
3 1 2hg4__assembly_3__model_1 dimeric (2) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (5)

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6. Fold Classification (SCOP + CATH) 60 domains

SCOP 2.08 (42 domains)

Domain ID domain_idd2hg4a1
Class classh — Coiled coil proteins
Fold Fold foldh.1 — Parallel coiled-coil
Superfamily Superfamily superfamilyh.1.38 — N-terminal linker of 6-deoxyerythronolide B synthase (DEBS)
Family Family familyh.1.38.1 — N-terminal linker of 6-deoxyerythronolide B synthase (DEBS)
Domain ID domain_idd2hg4a2
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.95 — Thiolase-like
Superfamily Superfamily superfamilyc.95.1 — Thiolase-like
Family Family familyc.95.1.1 — Thiolase-related
Domain ID domain_idd2hg4a3
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.95 — Thiolase-like
Superfamily Superfamily superfamilyc.95.1 — Thiolase-like
Family Family familyc.95.1.1 — Thiolase-related
Domain ID domain_idd2hg4a4
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.390 — KS-to-AT linker domain from 6-deoxyerythronolide B synthase (DEBS)-like
Superfamily Superfamily superfamilyd.390.1 — KS-to-AT linker domain from 6-deoxyerythronolide B synthase (DEBS)-like
Family Family familyd.390.1.1 — KS-to-AT linker domain from 6-deoxyerythronolide B synthase (DEBS)-like
Domain ID domain_idd2hg4a5
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.58 — Ferredoxin-like
Superfamily Superfamily superfamilyd.58.23 — Probable ACP-binding domain of malonyl-CoA ACP transacylase
Family Family familyd.58.23.1 — Probable ACP-binding domain of malonyl-CoA ACP transacylase
Domain ID domain_idd2hg4a6
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.19 — FabD/lysophospholipase-like
Superfamily Superfamily superfamilyc.19.1 — FabD/lysophospholipase-like
Family Family familyc.19.1.1 — FabD-like
Domain ID domain_idd2hg4a7
Class classj — Peptides
Fold Fold foldj.134 — C-terminal linker of 6-deoxyerythronolide B synthase (DEBS)-like
Superfamily Superfamily superfamilyj.134.1 — C-terminal linker of 6-deoxyerythronolide B synthase (DEBS)-like
Family Family familyj.134.1.1 — C-terminal linker of 6-deoxyerythronolide B synthase (DEBS)-like
Domain ID domain_idd2hg4b1
Class classh — Coiled coil proteins
Fold Fold foldh.1 — Parallel coiled-coil
Superfamily Superfamily superfamilyh.1.38 — N-terminal linker of 6-deoxyerythronolide B synthase (DEBS)
Family Family familyh.1.38.1 — N-terminal linker of 6-deoxyerythronolide B synthase (DEBS)
Domain ID domain_idd2hg4b2
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.95 — Thiolase-like
Superfamily Superfamily superfamilyc.95.1 — Thiolase-like
Family Family familyc.95.1.1 — Thiolase-related
Domain ID domain_idd2hg4b3
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.95 — Thiolase-like
Superfamily Superfamily superfamilyc.95.1 — Thiolase-like
Family Family familyc.95.1.1 — Thiolase-related
Domain ID domain_idd2hg4b4
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.390 — KS-to-AT linker domain from 6-deoxyerythronolide B synthase (DEBS)-like
Superfamily Superfamily superfamilyd.390.1 — KS-to-AT linker domain from 6-deoxyerythronolide B synthase (DEBS)-like
Family Family familyd.390.1.1 — KS-to-AT linker domain from 6-deoxyerythronolide B synthase (DEBS)-like
Domain ID domain_idd2hg4b5
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.58 — Ferredoxin-like
Superfamily Superfamily superfamilyd.58.23 — Probable ACP-binding domain of malonyl-CoA ACP transacylase
Family Family familyd.58.23.1 — Probable ACP-binding domain of malonyl-CoA ACP transacylase
Domain ID domain_idd2hg4b6
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.19 — FabD/lysophospholipase-like
Superfamily Superfamily superfamilyc.19.1 — FabD/lysophospholipase-like
Family Family familyc.19.1.1 — FabD-like
Domain ID domain_idd2hg4b7
Class classj — Peptides
Fold Fold foldj.134 — C-terminal linker of 6-deoxyerythronolide B synthase (DEBS)-like
Superfamily Superfamily superfamilyj.134.1 — C-terminal linker of 6-deoxyerythronolide B synthase (DEBS)-like
Family Family familyj.134.1.1 — C-terminal linker of 6-deoxyerythronolide B synthase (DEBS)-like
Domain ID domain_idd2hg4c1
Class classh — Coiled coil proteins
Fold Fold foldh.1 — Parallel coiled-coil
Superfamily Superfamily superfamilyh.1.38 — N-terminal linker of 6-deoxyerythronolide B synthase (DEBS)
Family Family familyh.1.38.1 — N-terminal linker of 6-deoxyerythronolide B synthase (DEBS)
Domain ID domain_idd2hg4c2
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.95 — Thiolase-like
Superfamily Superfamily superfamilyc.95.1 — Thiolase-like
Family Family familyc.95.1.1 — Thiolase-related
Domain ID domain_idd2hg4c3
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.95 — Thiolase-like
Superfamily Superfamily superfamilyc.95.1 — Thiolase-like
Family Family familyc.95.1.1 — Thiolase-related
Domain ID domain_idd2hg4c4
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.390 — KS-to-AT linker domain from 6-deoxyerythronolide B synthase (DEBS)-like
Superfamily Superfamily superfamilyd.390.1 — KS-to-AT linker domain from 6-deoxyerythronolide B synthase (DEBS)-like
Family Family familyd.390.1.1 — KS-to-AT linker domain from 6-deoxyerythronolide B synthase (DEBS)-like
Domain ID domain_idd2hg4c5
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.58 — Ferredoxin-like
Superfamily Superfamily superfamilyd.58.23 — Probable ACP-binding domain of malonyl-CoA ACP transacylase
Family Family familyd.58.23.1 — Probable ACP-binding domain of malonyl-CoA ACP transacylase
Domain ID domain_idd2hg4c6
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.19 — FabD/lysophospholipase-like
Superfamily Superfamily superfamilyc.19.1 — FabD/lysophospholipase-like
Family Family familyc.19.1.1 — FabD-like
Domain ID domain_idd2hg4c7
Class classj — Peptides
Fold Fold foldj.134 — C-terminal linker of 6-deoxyerythronolide B synthase (DEBS)-like
Superfamily Superfamily superfamilyj.134.1 — C-terminal linker of 6-deoxyerythronolide B synthase (DEBS)-like
Family Family familyj.134.1.1 — C-terminal linker of 6-deoxyerythronolide B synthase (DEBS)-like
Domain ID domain_idd2hg4d1
Class classh — Coiled coil proteins
Fold Fold foldh.1 — Parallel coiled-coil
Superfamily Superfamily superfamilyh.1.38 — N-terminal linker of 6-deoxyerythronolide B synthase (DEBS)
Family Family familyh.1.38.1 — N-terminal linker of 6-deoxyerythronolide B synthase (DEBS)
Domain ID domain_idd2hg4d2
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.95 — Thiolase-like
Superfamily Superfamily superfamilyc.95.1 — Thiolase-like
Family Family familyc.95.1.1 — Thiolase-related
Domain ID domain_idd2hg4d3
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.95 — Thiolase-like
Superfamily Superfamily superfamilyc.95.1 — Thiolase-like
Family Family familyc.95.1.1 — Thiolase-related
Domain ID domain_idd2hg4d4
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.390 — KS-to-AT linker domain from 6-deoxyerythronolide B synthase (DEBS)-like
Superfamily Superfamily superfamilyd.390.1 — KS-to-AT linker domain from 6-deoxyerythronolide B synthase (DEBS)-like
Family Family familyd.390.1.1 — KS-to-AT linker domain from 6-deoxyerythronolide B synthase (DEBS)-like
Domain ID domain_idd2hg4d5
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.58 — Ferredoxin-like
Superfamily Superfamily superfamilyd.58.23 — Probable ACP-binding domain of malonyl-CoA ACP transacylase
Family Family familyd.58.23.1 — Probable ACP-binding domain of malonyl-CoA ACP transacylase
Domain ID domain_idd2hg4d6
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.19 — FabD/lysophospholipase-like
Superfamily Superfamily superfamilyc.19.1 — FabD/lysophospholipase-like
Family Family familyc.19.1.1 — FabD-like
Domain ID domain_idd2hg4d7
Class classj — Peptides
Fold Fold foldj.134 — C-terminal linker of 6-deoxyerythronolide B synthase (DEBS)-like
Superfamily Superfamily superfamilyj.134.1 — C-terminal linker of 6-deoxyerythronolide B synthase (DEBS)-like
Family Family familyj.134.1.1 — C-terminal linker of 6-deoxyerythronolide B synthase (DEBS)-like
Domain ID domain_idd2hg4e1
Class classh — Coiled coil proteins
Fold Fold foldh.1 — Parallel coiled-coil
Superfamily Superfamily superfamilyh.1.38 — N-terminal linker of 6-deoxyerythronolide B synthase (DEBS)
Family Family familyh.1.38.1 — N-terminal linker of 6-deoxyerythronolide B synthase (DEBS)
Domain ID domain_idd2hg4e2
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.95 — Thiolase-like
Superfamily Superfamily superfamilyc.95.1 — Thiolase-like
Family Family familyc.95.1.1 — Thiolase-related
Domain ID domain_idd2hg4e3
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.95 — Thiolase-like
Superfamily Superfamily superfamilyc.95.1 — Thiolase-like
Family Family familyc.95.1.1 — Thiolase-related
Domain ID domain_idd2hg4e4
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.390 — KS-to-AT linker domain from 6-deoxyerythronolide B synthase (DEBS)-like
Superfamily Superfamily superfamilyd.390.1 — KS-to-AT linker domain from 6-deoxyerythronolide B synthase (DEBS)-like
Family Family familyd.390.1.1 — KS-to-AT linker domain from 6-deoxyerythronolide B synthase (DEBS)-like
Domain ID domain_idd2hg4e5
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.58 — Ferredoxin-like
Superfamily Superfamily superfamilyd.58.23 — Probable ACP-binding domain of malonyl-CoA ACP transacylase
Family Family familyd.58.23.1 — Probable ACP-binding domain of malonyl-CoA ACP transacylase
Domain ID domain_idd2hg4e6
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.19 — FabD/lysophospholipase-like
Superfamily Superfamily superfamilyc.19.1 — FabD/lysophospholipase-like
Family Family familyc.19.1.1 — FabD-like
Domain ID domain_idd2hg4e7
Class classj — Peptides
Fold Fold foldj.134 — C-terminal linker of 6-deoxyerythronolide B synthase (DEBS)-like
Superfamily Superfamily superfamilyj.134.1 — C-terminal linker of 6-deoxyerythronolide B synthase (DEBS)-like
Family Family familyj.134.1.1 — C-terminal linker of 6-deoxyerythronolide B synthase (DEBS)-like
Domain ID domain_idd2hg4f1
Class classh — Coiled coil proteins
Fold Fold foldh.1 — Parallel coiled-coil
Superfamily Superfamily superfamilyh.1.38 — N-terminal linker of 6-deoxyerythronolide B synthase (DEBS)
Family Family familyh.1.38.1 — N-terminal linker of 6-deoxyerythronolide B synthase (DEBS)
Domain ID domain_idd2hg4f2
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.95 — Thiolase-like
Superfamily Superfamily superfamilyc.95.1 — Thiolase-like
Family Family familyc.95.1.1 — Thiolase-related
Domain ID domain_idd2hg4f3
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.95 — Thiolase-like
Superfamily Superfamily superfamilyc.95.1 — Thiolase-like
Family Family familyc.95.1.1 — Thiolase-related
Domain ID domain_idd2hg4f4
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.390 — KS-to-AT linker domain from 6-deoxyerythronolide B synthase (DEBS)-like
Superfamily Superfamily superfamilyd.390.1 — KS-to-AT linker domain from 6-deoxyerythronolide B synthase (DEBS)-like
Family Family familyd.390.1.1 — KS-to-AT linker domain from 6-deoxyerythronolide B synthase (DEBS)-like
Domain ID domain_idd2hg4f5
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.58 — Ferredoxin-like
Superfamily Superfamily superfamilyd.58.23 — Probable ACP-binding domain of malonyl-CoA ACP transacylase
Family Family familyd.58.23.1 — Probable ACP-binding domain of malonyl-CoA ACP transacylase
Domain ID domain_idd2hg4f6
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.19 — FabD/lysophospholipase-like
Superfamily Superfamily superfamilyc.19.1 — FabD/lysophospholipase-like
Family Family familyc.19.1.1 — FabD-like
Domain ID domain_idd2hg4f7
Class classj — Peptides
Fold Fold foldj.134 — C-terminal linker of 6-deoxyerythronolide B synthase (DEBS)-like
Superfamily Superfamily superfamilyj.134.1 — C-terminal linker of 6-deoxyerythronolide B synthase (DEBS)-like
Family Family familyj.134.1.1 — C-terminal linker of 6-deoxyerythronolide B synthase (DEBS)-like

CATH v4.4 (18 domains)

Domain ID domain_id2hg4A01
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology47 — Peroxisomal Thiolase; Chain A, domain 1
Homologous superfamily homologous superfamily10 — Thiolase/Chalcone synthase
Domain ID domain_id2hg4A02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology70 — Alpha-Beta Plaits
Homologous superfamily homologous superfamily3290 —
Domain ID domain_id2hg4A03
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology366 — Malonyl-Coenzyme A Acyl Carrier Protein; domain 2
Homologous superfamily homologous superfamily10 — Malonyl-Coenzyme A Acyl Carrier Protein, domain 2
Domain ID domain_id2hg4B01
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology47 — Peroxisomal Thiolase; Chain A, domain 1
Homologous superfamily homologous superfamily10 — Thiolase/Chalcone synthase
Domain ID domain_id2hg4B02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology70 — Alpha-Beta Plaits
Homologous superfamily homologous superfamily3290 —
Domain ID domain_id2hg4B03
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology366 — Malonyl-Coenzyme A Acyl Carrier Protein; domain 2
Homologous superfamily homologous superfamily10 — Malonyl-Coenzyme A Acyl Carrier Protein, domain 2
Domain ID domain_id2hg4C01
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology47 — Peroxisomal Thiolase; Chain A, domain 1
Homologous superfamily homologous superfamily10 — Thiolase/Chalcone synthase
Domain ID domain_id2hg4C02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology70 — Alpha-Beta Plaits
Homologous superfamily homologous superfamily3290 —
Domain ID domain_id2hg4C03
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology366 — Malonyl-Coenzyme A Acyl Carrier Protein; domain 2
Homologous superfamily homologous superfamily10 — Malonyl-Coenzyme A Acyl Carrier Protein, domain 2
Domain ID domain_id2hg4D01
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology47 — Peroxisomal Thiolase; Chain A, domain 1
Homologous superfamily homologous superfamily10 — Thiolase/Chalcone synthase
Domain ID domain_id2hg4D02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology70 — Alpha-Beta Plaits
Homologous superfamily homologous superfamily3290 —
Domain ID domain_id2hg4D03
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology366 — Malonyl-Coenzyme A Acyl Carrier Protein; domain 2
Homologous superfamily homologous superfamily10 — Malonyl-Coenzyme A Acyl Carrier Protein, domain 2
Domain ID domain_id2hg4E01
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology47 — Peroxisomal Thiolase; Chain A, domain 1
Homologous superfamily homologous superfamily10 — Thiolase/Chalcone synthase
Domain ID domain_id2hg4E02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology70 — Alpha-Beta Plaits
Homologous superfamily homologous superfamily3290 —
Domain ID domain_id2hg4E03
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology366 — Malonyl-Coenzyme A Acyl Carrier Protein; domain 2
Homologous superfamily homologous superfamily10 — Malonyl-Coenzyme A Acyl Carrier Protein, domain 2
Domain ID domain_id2hg4F01
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology47 — Peroxisomal Thiolase; Chain A, domain 1
Homologous superfamily homologous superfamily10 — Thiolase/Chalcone synthase
Domain ID domain_id2hg4F02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology70 — Alpha-Beta Plaits
Homologous superfamily homologous superfamily3290 —
Domain ID domain_id2hg4F03
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology366 — Malonyl-Coenzyme A Acyl Carrier Protein; domain 2
Homologous superfamily homologous superfamily10 — Malonyl-Coenzyme A Acyl Carrier Protein, domain 2
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7. Citations (3)