2mjz

Capsid model of M13 bacteriophage virus from Magic-angle spinning NMR and Rosetta modeling

Method: SOLID-STATE NMR

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1. Protein Identity and Related Structures Protein Identity & Related Structures

Capsid protein G8P

Enterobacteria phage M13

State in the Current Structure

Assembly	Physical composition	Protein state	Molecular copy count	Associated components	Data consistency
1	Protein homooligomer	Homooligomer	Protein 35	No other associated polymer	Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence

UniProt name	CAPSD_BPM13
Isoform	—
PDB entities	1
Chains and sequence ranges	Author chain A； PDBConstruct 1–50； UniProt 24–73 Author chain B； PDBConstruct 1–50； UniProt 24–73 Author chain C； PDBConstruct 1–50； UniProt 24–73 Author chain D； PDBConstruct 1–50； UniProt 24–73 Author chain E； PDBConstruct 1–50； UniProt 24–73 Author chain F； PDBConstruct 1–50； UniProt 24–73 Author chain G； PDBConstruct 1–50； UniProt 24–73 Author chain H； PDBConstruct 1–50； UniProt 24–73 Author chain I； PDBConstruct 1–50； UniProt 24–73 Author chain J； PDBConstruct 1–50； UniProt 24–73 Author chain K； PDBConstruct 1–50； UniProt 24–73 Author chain L； PDBConstruct 1–50； UniProt 24–73 Author chain M； PDBConstruct 1–50； UniProt 24–73 Author chain N； PDBConstruct 1–50； UniProt 24–73 Author chain O； PDBConstruct 1–50； UniProt 24–73 Author chain P； PDBConstruct 1–50； UniProt 24–73 Author chain Q； PDBConstruct 1–50； UniProt 24–73 Author chain R； PDBConstruct 1–50； UniProt 24–73 Author chain S； PDBConstruct 1–50； UniProt 24–73 Author chain T； PDBConstruct 1–50； UniProt 24–73 Author chain U； PDBConstruct 1–50； UniProt 24–73 Author chain V； PDBConstruct 1–50； UniProt 24–73 Author chain W； PDBConstruct 1–50； UniProt 24–73 Author chain X； PDBConstruct 1–50； UniProt 24–73 Author chain Y； PDBConstruct 1–50； UniProt 24–73 Author chain Z； PDBConstruct 1–50； UniProt 24–73 Author chain a； PDBConstruct 1–50； UniProt 24–73 Author chain b； PDBConstruct 1–50； UniProt 24–73 Author chain c； PDBConstruct 1–50； UniProt 24–73 Author chain d； PDBConstruct 1–50； UniProt 24–73 Author chain e； PDBConstruct 1–50； UniProt 24–73 Author chain f； PDBConstruct 1–50； UniProt 24–73 Author chain g； PDBConstruct 1–50； UniProt 24–73 Author chain h； PDBConstruct 1–50； UniProt 24–73 Author chain i； PDBConstruct 1–50； UniProt 24–73

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id	2mjz
Deposition date deposition_date	2014-01-22
Structure title title	Capsid model of M13 bacteriophage virus from Magic-angle spinning NMR and Rosetta modeling
Keywords keywords	molecular assembly, VIRAL PROTEIN; VIRAL PROTEIN
Experimental Method method	SOLID-STATE NMR

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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

2mjz__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

2mjz__assembly_1__model_1 | I(q)

100 plotted points; both axes use logarithmic scales.

2mjz__assembly_1__model_1 | P(r) · Pending

P(r) will be calculated and displayed separately for the same assembly/model.

Rg（Guinier）	45.19 Å
Rg (electron density)	44.95 Å
Total Rg	44.90 Å
Atom count	26145
Residues	1750
Excluded volume	235000 Å³
Maximum q	0.500 Å⁻¹

Assembly	Model	Structure unit	Oligomeric description	Status	CRYSOL	Actions
1	1	`2mjz__assembly_1__model_1`	35-meric （35）	Success	4.1.3-1-20251215 (887e7ef)	View Download
1	2	`2mjz__assembly_1__model_2`	35-meric （35）	Success	4.1.3-1-20251215 (887e7ef)	View Download
1	3	`2mjz__assembly_1__model_3`	35-meric （35）	Success	4.1.3-1-20251215 (887e7ef)	View Download

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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (1)

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6. Fold Classification (SCOP + CATH) 35 domains

CATH v4.4 (35 domains)

Domain ID domain_id	2mjzA00
Class class	1 — Mainly Alpha
Architecture architecture	20 — Up-down Bundle
Topology topology	5 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces
Homologous superfamily homologous superfamily	80 —

Domain ID domain_id	2mjzB00
Class class	1 — Mainly Alpha
Architecture architecture	20 — Up-down Bundle
Topology topology	5 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces
Homologous superfamily homologous superfamily	80 —

Domain ID domain_id	2mjzC00
Class class	1 — Mainly Alpha
Architecture architecture	20 — Up-down Bundle
Topology topology	5 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces
Homologous superfamily homologous superfamily	80 —

Domain ID domain_id	2mjzD00
Class class	1 — Mainly Alpha
Architecture architecture	20 — Up-down Bundle
Topology topology	5 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces
Homologous superfamily homologous superfamily	80 —

Domain ID domain_id	2mjzE00
Class class	1 — Mainly Alpha
Architecture architecture	20 — Up-down Bundle
Topology topology	5 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces
Homologous superfamily homologous superfamily	80 —

Domain ID domain_id	2mjzF00
Class class	1 — Mainly Alpha
Architecture architecture	20 — Up-down Bundle
Topology topology	5 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces
Homologous superfamily homologous superfamily	80 —

Domain ID domain_id	2mjzG00
Class class	1 — Mainly Alpha
Architecture architecture	20 — Up-down Bundle
Topology topology	5 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces
Homologous superfamily homologous superfamily	80 —

Domain ID domain_id	2mjzH00
Class class	1 — Mainly Alpha
Architecture architecture	20 — Up-down Bundle
Topology topology	5 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces
Homologous superfamily homologous superfamily	80 —

Domain ID domain_id	2mjzI00
Class class	1 — Mainly Alpha
Architecture architecture	20 — Up-down Bundle
Topology topology	5 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces
Homologous superfamily homologous superfamily	80 —

Domain ID domain_id	2mjzJ00
Class class	1 — Mainly Alpha
Architecture architecture	20 — Up-down Bundle
Topology topology	5 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces
Homologous superfamily homologous superfamily	80 —

Domain ID domain_id	2mjzK00
Class class	1 — Mainly Alpha
Architecture architecture	20 — Up-down Bundle
Topology topology	5 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces
Homologous superfamily homologous superfamily	80 —

Domain ID domain_id	2mjzL00
Class class	1 — Mainly Alpha
Architecture architecture	20 — Up-down Bundle
Topology topology	5 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces
Homologous superfamily homologous superfamily	80 —

Domain ID domain_id	2mjzM00
Class class	1 — Mainly Alpha
Architecture architecture	20 — Up-down Bundle
Topology topology	5 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces
Homologous superfamily homologous superfamily	80 —

Domain ID domain_id	2mjzN00
Class class	1 — Mainly Alpha
Architecture architecture	20 — Up-down Bundle
Topology topology	5 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces
Homologous superfamily homologous superfamily	80 —

Domain ID domain_id	2mjzO00
Class class	1 — Mainly Alpha
Architecture architecture	20 — Up-down Bundle
Topology topology	5 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces
Homologous superfamily homologous superfamily	80 —

Domain ID domain_id	2mjzP00
Class class	1 — Mainly Alpha
Architecture architecture	20 — Up-down Bundle
Topology topology	5 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces
Homologous superfamily homologous superfamily	80 —

Domain ID domain_id	2mjzQ00
Class class	1 — Mainly Alpha
Architecture architecture	20 — Up-down Bundle
Topology topology	5 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces
Homologous superfamily homologous superfamily	80 —

Domain ID domain_id	2mjzR00
Class class	1 — Mainly Alpha
Architecture architecture	20 — Up-down Bundle
Topology topology	5 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces
Homologous superfamily homologous superfamily	80 —

Domain ID domain_id	2mjzS00
Class class	1 — Mainly Alpha
Architecture architecture	20 — Up-down Bundle
Topology topology	5 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces
Homologous superfamily homologous superfamily	80 —

Domain ID domain_id	2mjzT00
Class class	1 — Mainly Alpha
Architecture architecture	20 — Up-down Bundle
Topology topology	5 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces
Homologous superfamily homologous superfamily	80 —

Domain ID domain_id	2mjzU00
Class class	1 — Mainly Alpha
Architecture architecture	20 — Up-down Bundle
Topology topology	5 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces
Homologous superfamily homologous superfamily	80 —

Domain ID domain_id	2mjzV00
Class class	1 — Mainly Alpha
Architecture architecture	20 — Up-down Bundle
Topology topology	5 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces
Homologous superfamily homologous superfamily	80 —

Domain ID domain_id	2mjzW00
Class class	1 — Mainly Alpha
Architecture architecture	20 — Up-down Bundle
Topology topology	5 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces
Homologous superfamily homologous superfamily	80 —

Domain ID domain_id	2mjzX00
Class class	1 — Mainly Alpha
Architecture architecture	20 — Up-down Bundle
Topology topology	5 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces
Homologous superfamily homologous superfamily	80 —

Domain ID domain_id	2mjzY00
Class class	1 — Mainly Alpha
Architecture architecture	20 — Up-down Bundle
Topology topology	5 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces
Homologous superfamily homologous superfamily	80 —

Domain ID domain_id	2mjzZ00
Class class	1 — Mainly Alpha
Architecture architecture	20 — Up-down Bundle
Topology topology	5 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces
Homologous superfamily homologous superfamily	80 —

Domain ID domain_id	2mjza00
Class class	1 — Mainly Alpha
Architecture architecture	20 — Up-down Bundle
Topology topology	5 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces
Homologous superfamily homologous superfamily	80 —

Domain ID domain_id	2mjzb00
Class class	1 — Mainly Alpha
Architecture architecture	20 — Up-down Bundle
Topology topology	5 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces
Homologous superfamily homologous superfamily	80 —

Domain ID domain_id	2mjzc00
Class class	1 — Mainly Alpha
Architecture architecture	20 — Up-down Bundle
Topology topology	5 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces
Homologous superfamily homologous superfamily	80 —

Domain ID domain_id	2mjzd00
Class class	1 — Mainly Alpha
Architecture architecture	20 — Up-down Bundle
Topology topology	5 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces
Homologous superfamily homologous superfamily	80 —

Domain ID domain_id	2mjze00
Class class	1 — Mainly Alpha
Architecture architecture	20 — Up-down Bundle
Topology topology	5 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces
Homologous superfamily homologous superfamily	80 —

Domain ID domain_id	2mjzf00
Class class	1 — Mainly Alpha
Architecture architecture	20 — Up-down Bundle
Topology topology	5 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces
Homologous superfamily homologous superfamily	80 —

Domain ID domain_id	2mjzg00
Class class	1 — Mainly Alpha
Architecture architecture	20 — Up-down Bundle
Topology topology	5 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces
Homologous superfamily homologous superfamily	80 —

Domain ID domain_id	2mjzh00
Class class	1 — Mainly Alpha
Architecture architecture	20 — Up-down Bundle
Topology topology	5 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces
Homologous superfamily homologous superfamily	80 —

Domain ID domain_id	2mjzi00
Class class	1 — Mainly Alpha
Architecture architecture	20 — Up-down Bundle
Topology topology	5 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces
Homologous superfamily homologous superfamily	80 —

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Description description	Capsid protein G8P
Molecular weight formula_weight	5243.0 kDa
Source method src_method	man
Copy count entity_count	35

Polymer type type	polypeptide(L)
Chain IDs strand_id	A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,a,b,c,d,e,f,g,h,i
Atom count atom_count	78435

Source organism organism	Enterobacteria phage M13
NCBI taxonomy ID ncbi_taxonomy_id	10870

Capsid model of M13 bacteriophage virus from Magic-angle spinning NMR and Rosetta modeling

1. Protein Identity and Related Structures Protein Identity & Related Structures

Capsid protein G8P

State in the Current Structure

Other States of the Same Protein in the Database

2. Structure Basics 2. Structure Basics

3. Official assembly/model SAXS Official SAXS Profiles

2mjz__assembly_1__model_1

2mjz__assembly_1__model_1 | I(q)

2mjz__assembly_1__model_1 | P(r) · Pending

4. Crystallography and Experiment 4. Crystallography & Experiment

5. Entities and Polymers Entities & Polymers (1)

Entity 1 Entity 1 polymer

Polymer Polymer

Source Source

6. Fold Classification (SCOP + CATH) 35 domains

CATH v4.4 (35 domains)

7. Citations (1)

Capsid model of M13 bacteriophage virus from Magic-angle spinning NMR and Rosetta modeling

1. Protein Identity and Related Structures Protein Identity & Related Structures

Capsid protein G8P

State in the Current Structure

Other States of the Same Protein in the Database

Monomer

Homodimer

Homotetramer

Other homooligomers

Heteromeric or nucleic-acid complex

2. Structure Basics 2. Structure Basics

3. Official assembly/model SAXS Official SAXS Profiles

2mjz__assembly_1__model_1

2mjz__assembly_1__model_1 | I(q)

2mjz__assembly_1__model_1 | P(r) · Pending

4. Crystallography and Experiment 4. Crystallography & Experiment

5. Entities and Polymers Entities & Polymers (1)

Entity 1 Entity 1 polymer

Polymer Polymer

Source Source

6. Fold Classification (SCOP + CATH) 35 domains

CATH v4.4 (35 domains)

7. Citations (1)