Pyrococcus abyssi
| Assembly | Physical composition | Protein state | Molecular copy count | Associated components | Data consistency |
|---|---|---|---|---|---|
| 1 | Protein monomer | Monomer | Protein 1 | FE (III) ION × 1 SODIUM ION × 2 water × 1 | Consistent with protein count |
| UniProt name | RUBR_PYRAB |
| Isoform | — |
| PDB entities | 1 |
| Chains and sequence ranges | Author chain A； PDBConstruct 1–52； UniProt 2–53 |
The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.
| Entry ID entry_id | 2pya |
| Deposition date deposition_date | 2007-05-16 |
| Structure title title | Ultra-high resolution structure of P. abyssi rubredoxin W4L/R5S/A44S |
| Keywords keywords | O-H...S-Fe hydrogen bond, ELECTRON TRANSPORT; ELECTRON TRANSPORT |
| Experimental Method method | X-RAY DIFFRACTION |
This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.
Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)
| Rg（Guinier） | 11.44 Å |
| Rg (electron density) | 9.91 Å |
| Total Rg | 11.48 Å |
| Atom count | 774 |
| Residues | 52 |
| Excluded volume | 7214 ų |
| Maximum q | 0.500 Å⁻¹ |
| Domain ID domain_id | d2pyaa_ |
| Class class | g — Small proteins |
| Fold Fold fold | g.41 — Rubredoxin-like |
| Superfamily Superfamily superfamily | g.41.5 — Rubredoxin-like |
| Family Family family | g.41.5.1 — Rubredoxin |
| Domain ID domain_id | 2pyaA00 |
| Class class | 2 — Mainly Beta |
| Architecture architecture | 20 — Single Sheet |
| Topology topology | 28 — Rubrerythrin, domain 2 |
| Homologous superfamily homologous superfamily | 10 — |