2v3i

Hypocrea jecorina Cel7A in complex with (R)-dihydroxy-phenanthrenolol

Method: X-RAY DIFFRACTION Dmax: 67.4 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

EXOGLUCANASE 1

OrganismNot specified

UniProt P62694

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein monomer Monomer Protein × 1 PDB declaration: monomeric(1) Consistent with protein copy count Chain A; UniProt 18–451 Fragment:CATALYTIC MODULE, RESIDUES 18-451 Non-standard monomer:Yes (specific site not provided by mmCIF) NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 1 CO COBALT (II) ION × 2 GOL GLYCEROL × 1 XX6 2-{[(2R)-2-HYDROXY-3-(9-PHENANTHRYLOXY)PROPYL]AMINO}PROPANE-1,3-DIOL × 1 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 5;298 K;POLYETHYLENE GLYCOL MONOMETHYL ETHER 5000, GLYCEROL, COBALT CHLORIDE, SODIUM ACETATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298 K Resolution 1.05 Å R-free 0.140

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

41 other PDB entries and 44 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name GUX1_TRIRE
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–434; UniProt 18–451

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 2v3i

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 2v3i
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2. Structure Basics 2. Structure Basics

Entry ID entry_id2v3i
Deposition date deposition_date2007-06-18
Structure title titleHypocrea jecorina Cel7A in complex with (R)-dihydroxy-phenanthrenolol
Keywords keywords;HYDROLASE, GLYCOSIDASE, GLYCOPROTEIN, CARBOHYDRATE METABOLISM, POLYSACCHARIDE DEGRADATION, PYRROLIDONE CARBOXYLIC ACID, HYDROLASE(O-GLYCOSYL), CELLULOSE DEGRADATION, CHIRAL SEPARATION ;; HYDROLASE
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier21.57
Radius of gyration Rg (electron density) rg_electron20.37
Forward intensity I(0) i042033000.00
Molecular weight molecular_weight46719.0 kDa
Excluded volume excluded_volume56704 ų
Envelope volume envelope_volume64102 ų
Hydration-shell volume shell_volume25399 ų
Envelope diameter envelope_diameter69.5
Shell Rg shell_rg27.88
Envelope Rg envelope_rg20.64
Shape Rg shape_rg20.33
Total Rg total_rg21.27
Total atoms total_atoms3267
Residues n_residues433
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax67.4
Rg (real space) rg_real21.42
Rg uncertainty (real space) rg_real_error0.32
I(0) (real space) i0_real4.2030e+07
I(0) uncertainty (real space) i0_real_error4.7470e+05
Rg (reciprocal space) rg_reciprocal21.45
I(0) (reciprocal space) i0_reciprocal42030000.0000
Solution quality estimate total_estimate0.8963
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary27.8
Skewness Skewness skewness0.163
Kurtosis Kurtosis kurtosis-0.397
Angular range angular_range— – 0.3700 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha7746000.0000
Real-space data points n_real_points69
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.892; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.990; Smooth: 0.983

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (6)

7. Fold Classification (SCOP + CATH) 2 domains

SCOP 2.08 (1 domains)

Domain ID domain_idd2v3ia_
Class classb — All beta proteins
Fold Fold foldb.29 — Concanavalin A-like lectins/glucanases
Superfamily Superfamily superfamilyb.29.1 — Concanavalin A-like lectins/glucanases
Family Family familyb.29.1.10 — Glycosyl hydrolase family 7 catalytic core

CATH v4.4 (1 domains)

Domain ID domain_id2v3iA00
Class class2 — Mainly Beta
Architecture architecture70 — Distorted Sandwich
Topology topology100 — 1,4-Beta-D-Glucan Cellobiohydrolase I; Chain A
Homologous superfamily homologous superfamily10 — Glycoside hydrolase, family 7, domain

8. Citations (1)

9. Files and Curves (10)