7oc8

Trichoderma reesei Cel7A E212Q mutant in complex with pNPL

Method: X-RAY DIFFRACTION Dmax: 67.8 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

Exoglucanase 1

Hypocrea jecorina

UniProt P62694

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Other combination Monomer Protein × 1 其他Polymer 2 PDB declaration: monomeric(1) Consistent with protein copy count Chain A; UniProt 18–451 Mutation:E212Q Non-standard monomer:Yes (specific site not provided by mmCIF) beta-D-galactopyranose-(1-4)-beta-D-glucopyranose × 2 NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 1 NPO P-NITROPHENOL × 2 CO COBALT (II) ION × 4 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 6;294 K;50 mM morpholinoethane sulphonic acid(pH 6.0), 21.25% polyethylene glycol 5000 monomethyl ether, 12.5% glycerol, 5 mM cobalt chloride Resolution 1.60 Å R-free 0.184

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

41 other PDB entries and 44 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name GUX1_HYPJE
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–434; UniProt 18–451

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 7oc8

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 7oc8
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2. Structure Basics 2. Structure Basics

Entry ID entry_id7oc8
Deposition date deposition_date2021-04-26
Structure title titleTrichoderma reesei Cel7A E212Q mutant in complex with pNPL
Keywords keywordsGLYCOSIDE HYDROLASE, CELLULASE, ENZYME KINETICS, NON-PRODUCTIVE BINDING, HYDROLASE; HYDROLASE
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier21.69
Radius of gyration Rg (electron density) rg_electron20.49
Forward intensity I(0) i044089600.00
Molecular weight molecular_weight47392.0 kDa
Excluded volume excluded_volume57340 ų
Envelope volume envelope_volume65527 ų
Hydration-shell volume shell_volume25788 ų
Envelope diameter envelope_diameter69.8
Shell Rg shell_rg28.08
Envelope Rg envelope_rg20.73
Shape Rg shape_rg20.46
Total Rg total_rg21.40
Total atoms total_atoms3306
Residues n_residues433
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax67.8
Rg (real space) rg_real21.54
Rg uncertainty (real space) rg_real_error0.31
I(0) (real space) i0_real4.4090e+07
I(0) uncertainty (real space) i0_real_error5.6440e+05
Rg (reciprocal space) rg_reciprocal21.57
I(0) (reciprocal space) i0_reciprocal44090000.0000
Solution quality estimate total_estimate0.8952
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary28.3
Skewness Skewness skewness0.152
Kurtosis Kurtosis kurtosis-0.409
Angular range angular_range— – 0.3650 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha8972000.0000
Real-space data points n_real_points68
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.890; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.992; Smooth: 0.971

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (6)

8. Citations (1)

9. Files and Curves (10)