← Back to search
2ypc

Catalytic domain of mouse 2',3'-cyclic nucleotide 3'- phosphodiesterase, with mutation H309S, crystallized with 2',3-(SP)-Cyclic-AMPS

Method: X-RAY DIFFRACTION
▼

1. Protein Identity and Related Structures Protein Identity & Related Structures

;2', 3'-CYCLIC NUCLEOTIDE 3'-PHOSPHODIESTERASE ;

Mus musculus

UniProt P16330

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein monomer Monomer Protein 1 [(3aR,4R,6R,6aR)-4-(6-aminopurin-9-yl)-2-oxidanyl-2-sulfanylidene-3a,4,6,6a-tetrahydrofuro[3,4-d][1,3,2]dioxaphosphol-6-yl]methanol × 1 water × 1 Consistent with protein count

Other States of the Same Protein in the Database

Monomer
2xmi 2y1p 2y3x 2y3x 2y3x 2ydb 2ydc 2ydd 2yoz 2yp0 2ypc 2ype

37 assemblies; showing the first 12

Homodimer

None

Homotetramer

None

Other homooligomers

None

Heteromeric or nucleic-acid complex
9ert 9eru 9eru 9eru 9eru 9erw 9etj 9etj 9etj 9etj 9etl 9etl

12 assemblies

View Construct and Data Evidence
UniProt name CN37_MOUSE
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A； PDBConstruct 2–221； UniProt 159–378

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

▼

2. Structure Basics 2. Structure Basics

Entry ID entry_id2ypc
Deposition date deposition_date2012-10-30
Structure title titleCatalytic domain of mouse 2',3'-cyclic nucleotide 3'- phosphodiesterase, with mutation H309S, crystallized with 2',3-(SP)-Cyclic-AMPS
Keywords keywordsHYDROLASE, MYELIN, NERVOUS SYSTEM; HYDROLASE
Experimental Method methodX-RAY DIFFRACTION
▼

3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

2ypc__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

2ypc__assembly_1__model_1 | I(q)

10-2 10-1 105 106 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

2ypc__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg（Guinier）18.66 Å
Rg (electron density)17.66 Å
Total Rg18.65 Å
Atom count3393
Residues214
Excluded volume30328 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 2ypc__assembly_1__model_1 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
▶

4. Crystallography and Experiment 4. Crystallography & Experiment

▶

5. Entities and Polymers Entities & Polymers (3)

▼

6. Fold Classification (SCOP + CATH) 2 domains

SCOP 2.08 (1 domains)

Domain ID domain_idd2ypca_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.61 — LigT-like
Superfamily Superfamily superfamilyd.61.1 — LigT-like
Family Family familyd.61.1.3 — 2',3'-cyclic nucleotide 3'-phosphodiesterase, catalytic domain

CATH v4.4 (1 domains)

Domain ID domain_id2ypcA00
Class class3 — Alpha Beta
Architecture architecture90 — Alpha-Beta Complex
Topology topology1740 — 2',3'-cyclic nucleotide 3'-phosphodiesterase fold
Homologous superfamily homologous superfamily10 — 2',3'-cyclic nucleotide 3'-phosphodiesterase superfamily
▶

7. Citations (1)