3g81

Crystal structure of the trimeric neck and carbohydrate recognition domain of human surfactant protein D in complex with alpha methyl mannoside

Method: X-RAY DIFFRACTION

1. 蛋白身份与相关结构 Protein Identity & Related Structures

Pulmonary surfactant-associated protein D

Homo sapiens

UniProt P35247

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白同源多聚体 同源多聚体 蛋白 3 CALCIUM ION × 9 methyl alpha-D-mannopyranoside × 3 water × 3 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 SFTPD_HUMAN
Isoform
PDB实体 1
链与序列区间 作者链 A; PDB构建体 8–160; UniProt 223–375 作者链 B; PDB构建体 8–160; UniProt 223–375 作者链 C; PDB构建体 8–160; UniProt 223–375

页面优先展示蛋白身份、当前 assembly、共同组分、聚集状态和跨 PDB 结构链接。 链映射与序列区间收在“数据证据”中;数据库内部编号、导入时间和 assembly 操作表达式仅用于维护,因此不在读者页面展示。

2. 结构基本信息 2. Structure Basics

条目编号 entry_id3g81
沉积日期 deposition_date2009-02-11
结构标题 titleCrystal structure of the trimeric neck and carbohydrate recognition domain of human surfactant protein D in complex with alpha methyl mannoside
关键词 keywords;SURFACTANT PROTEIN, CARBOHYDRATE RECOGNITION DOMAIN, Collagen, Extracellular matrix, Gaseous exchange, Glycoprotein, Hydroxylation, Lectin, Secreted, Surface film, SUGAR BINDING PROTEIN ;; SUGAR BINDING PROTEIN
实验方法 methodX-RAY DIFFRACTION

3. Official assembly/model 理论 SAXS Official SAXS Profiles

页面只读取最新 assembly 计算结果。每一条曲线都对应明确的 PDB、official biological assembly 和 coordinate model。

3g81__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

下载该曲线 .dat

3g81__assembly_1__model_1 | I(q)

10-2 10-1 105 106 107 q (1/Angstrom) I(q)
100 个绘图点;横轴和纵轴均采用对数尺度。

3g81__assembly_1__model_1 | P(r) · Pending

新版 assembly/model P(r) 尚未计算 此处仅保留位置,不展示旧数据 r (Angstrom) P(r)
P(r) 将按相同 assembly/model 分别计算和展示。
Rg(Guinier)26.64 Å
Rg(电子密度)25.33 Å
总 Rg26.19 Å
原子数3505
残基数452
排除体积62103 ų
最大 q0.500 Å⁻¹
Assembly Model 结构单元 聚集说明 状态 CRYSOL 操作
1 1 3g81__assembly_1__model_1 trimeric (3) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载

4. 晶体学与实验 4. Crystallography & Experiment

5. 实体与聚合物信息 Entities & Polymers (4)

6. 折叠分类 (SCOP + CATH) 9 domains

SCOP 2.08 (6 domains)

结构域编号 domain_idd3g81a1
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.169 — C-type lectin-like
超家族 Superfamily superfamilyd.169.1 — C-type lectin-like
家族 Family familyd.169.1.0 — automated matches
结构域编号 domain_idd3g81a2
类 Class classh — Coiled coil proteins
折叠类型 Fold foldh.1 — Parallel coiled-coil
超家族 Superfamily superfamilyh.1.1 — Triple coiled coil domain of C-type lectins
家族 Family familyh.1.1.1 — Triple coiled coil domain of C-type lectins
结构域编号 domain_idd3g81b1
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.169 — C-type lectin-like
超家族 Superfamily superfamilyd.169.1 — C-type lectin-like
家族 Family familyd.169.1.0 — automated matches
结构域编号 domain_idd3g81b2
类 Class classh — Coiled coil proteins
折叠类型 Fold foldh.1 — Parallel coiled-coil
超家族 Superfamily superfamilyh.1.1 — Triple coiled coil domain of C-type lectins
家族 Family familyh.1.1.1 — Triple coiled coil domain of C-type lectins
结构域编号 domain_idd3g81c1
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.169 — C-type lectin-like
超家族 Superfamily superfamilyd.169.1 — C-type lectin-like
家族 Family familyd.169.1.0 — automated matches
结构域编号 domain_idd3g81c2
类 Class classh — Coiled coil proteins
折叠类型 Fold foldh.1 — Parallel coiled-coil
超家族 Superfamily superfamilyh.1.1 — Triple coiled coil domain of C-type lectins
家族 Family familyh.1.1.1 — Triple coiled coil domain of C-type lectins

CATH v4.4 (3 domains)

结构域编号 domain_id3g81A00
类 Class class3 — Alpha Beta
架构 Architecture architecture10 — Roll
拓扑 Topology topology100 — Mannose-Binding Protein A; Chain A
同源超家族 H-superfamily homologous superfamily10 — Mannose-Binding Protein A, subunit A
结构域编号 domain_id3g81B00
类 Class class3 — Alpha Beta
架构 Architecture architecture10 — Roll
拓扑 Topology topology100 — Mannose-Binding Protein A; Chain A
同源超家族 H-superfamily homologous superfamily10 — Mannose-Binding Protein A, subunit A
结构域编号 domain_id3g81C00
类 Class class3 — Alpha Beta
架构 Architecture architecture10 — Roll
拓扑 Topology topology100 — Mannose-Binding Protein A; Chain A
同源超家族 H-superfamily homologous superfamily10 — Mannose-Binding Protein A, subunit A

7. 引用文献 (1)