3gl6

Crystal structure of JARID1A-PHD3 complexed with H3(1-9)K4me3 peptide

Method: X-RAY DIFFRACTION
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Histone demethylase JARID1A

Homo sapiens

UniProt P29375

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 4 Histone H3 × 2 ZINC ION × 6 water × 4 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name JAD1A_HUMAN
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 2–52; UniProt 1609–1659

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id3gl6
Deposition date deposition_date2009-03-11
Structure title titleCrystal structure of JARID1A-PHD3 complexed with H3(1-9)K4me3 peptide
Keywords keywords;PHD finger, H3(1-9)K4me3 peptide, leukemia, Alternative splicing, Chromatin regulator, Developmental protein, Dioxygenase, Iron, Metal-binding, Nucleus, Oxidoreductase, Phosphoprotein, Polymorphism, Transcription, Transcription regulation, Zinc, Zinc-finger, Chromosomal protein, DNA-binding, Nucleosome core ;; OXIDOREDUCTASE
Experimental Method methodX-RAY DIFFRACTION
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

3gl6__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

3gl6__assembly_1__model_1 | I(q)

10-2 10-1 105 106 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

3gl6__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)16.21 Å
Rg (electron density)15.27 Å
Total Rg16.05 Å
Atom count938
Residues118
Excluded volume16410 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 3gl6__assembly_1__model_1 tetrameric (4) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (4)

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7. Citations (1)