3j92

Structure and assembly pathway of the ribosome quality control complex

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

NEMF

Homo sapiens

UniProt O60524

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 51 RNA 4 uL2 × 1 uL3 × 1 uL4 × 1 uL18 × 1 eL6 × 1 eL30 × 1 eL8 × 1 uL6 × 1 uL16 × 1 uL5 × 1 eL13 × 1 eL14 × 1 eL15 × 1 uL13 × 1 uL22 × 1 eL18 × 1 eL19 × 1 eL20 × 1 eL21 × 1 eL22 × 1 uL14 × 1 eL24 × 1 uL23 × 1 uL24 × 1 eL27 × 1 uL15 × 1 eL29 × 1 eL30 × 1 eL31 × 1 eL32 × 1 eL33 × 1 eL34 × 1 uL29 × 1 eL36 × 1 eL37 × 1 eL38 × 1 eL39 × 1 eL40 × 1 eL42 × 1 eL43 × 1 eL28 × 1 uL10 × 1 uL11 × 1 Listerin × 3 (O94822) Listerin × 2 nascent chain × 1 tRNA × 1 28S rRNA × 1 5S rRNA × 1 5.8S rRNA × 1 MAGNESIUM ION × 159 ZINC ION × 5 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name NEMF_HUMAN
Isoform —
PDB entities 44
Chains and sequence ranges Author chain u; PDBConstruct 1–501; UniProt 1–501 Author chain v; PDBConstruct 1–501; UniProt 1–501

Listerin

Homo sapiens

UniProt O94822

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 51 RNA 4 uL2 × 1 uL3 × 1 uL4 × 1 uL18 × 1 eL6 × 1 eL30 × 1 eL8 × 1 uL6 × 1 uL16 × 1 uL5 × 1 eL13 × 1 eL14 × 1 eL15 × 1 uL13 × 1 uL22 × 1 eL18 × 1 eL19 × 1 eL20 × 1 eL21 × 1 eL22 × 1 uL14 × 1 eL24 × 1 uL23 × 1 uL24 × 1 eL27 × 1 uL15 × 1 eL29 × 1 eL30 × 1 eL31 × 1 eL32 × 1 eL33 × 1 eL34 × 1 uL29 × 1 eL36 × 1 eL37 × 1 eL38 × 1 eL39 × 1 eL40 × 1 eL42 × 1 eL43 × 1 eL28 × 1 uL10 × 1 uL11 × 1 NEMF × 2 (O60524) Listerin × 2 nascent chain × 1 tRNA × 1 28S rRNA × 1 5S rRNA × 1 5.8S rRNA × 1 MAGNESIUM ION × 159 ZINC ION × 5 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name LTN1_HUMAN
Isoform —
PDB entities 45
Chains and sequence ranges Author chain 0; PDBConstruct 1–1766; UniProt 1–1766 Author chain w; PDBConstruct 1–1766; UniProt 1–1766 Author chain z; PDBConstruct 1–1766; UniProt 1–1766

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id3j92
Deposition date deposition_date2014-12-02
Structure title titleStructure and assembly pathway of the ribosome quality control complex
Keywords keywordsRWD, RING, quality control, RIBOSOME-LIGASE complex; RIBOSOME/LIGASE
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

3j92__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

3j92__assembly_1__model_1 | I(q)

10-2 10-1 107 108 109 1010 1011 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

3j92__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)80.61 Å
Rg (electron density)81.65 Å
Total Rg81.54 Å
Atom count146386
Residues11687
Excluded volume2295000 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 3j92__assembly_1__model_1 55-meric (55) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (53)

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7. Citations (1)