3rgb

Crystal structure of particulate methane monooxygenase from Methylococcus capsulatus (Bath)

Method: X-RAY DIFFRACTION
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1. 蛋白身份与相关结构 Protein Identity & Related Structures

Methane monooxygenase subunit B2

物种未注明

UniProt Q49104

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白异源复合物 异源复合物 蛋白 9 Methane monooxygenase subunit A2 × 3 (Q607G3) Methane monooxygenase subunit C2 × 3 (O05111) COPPER (II) ION × 3 ZINC ION × 9 DINUCLEAR COPPER ION × 3 water × 3 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 Q49104_METCA
Isoform —
PDB实体 1
链与序列区间 作者链 A; PDB构建体 1–414; UniProt 1–414 作者链 E; PDB构建体 1–414; UniProt 1–414 作者链 I; PDB构建体 1–414; UniProt 1–414

Methane monooxygenase subunit A2

物种未注明

UniProt Q607G3

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白异源复合物 异源复合物 蛋白 9 Methane monooxygenase subunit B2 × 3 (Q49104) Methane monooxygenase subunit C2 × 3 (O05111) COPPER (II) ION × 3 ZINC ION × 9 DINUCLEAR COPPER ION × 3 water × 3 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 Q607G3_METCA
Isoform —
PDB实体 2
链与序列区间 作者链 B; PDB构建体 1–247; UniProt 1–247 作者链 F; PDB构建体 1–247; UniProt 1–247 作者链 J; PDB构建体 1–247; UniProt 1–247

Methane monooxygenase subunit C2

物种未注明

UniProt O05111

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白异源复合物 异源复合物 蛋白 9 Methane monooxygenase subunit B2 × 3 (Q49104) Methane monooxygenase subunit A2 × 3 (Q607G3) COPPER (II) ION × 3 ZINC ION × 9 DINUCLEAR COPPER ION × 3 water × 3 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 O05111_METCA
Isoform —
PDB实体 3
链与序列区间 作者链 C; PDB构建体 1–289; UniProt 1–289 作者链 G; PDB构建体 1–289; UniProt 1–289 作者链 K; PDB构建体 1–289; UniProt 1–289

页面优先展示蛋白身份、当前 assembly、共同组分、聚集状态和跨 PDB 结构链接。 链映射与序列区间收在“数据证据”中;数据库内部编号、导入时间和 assembly 操作表达式仅用于维护,因此不在读者页面展示。

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2. 结构基本信息 2. Structure Basics

条目编号 entry_id3rgb
沉积日期 deposition_date2011-04-08
结构标题 titleCrystal structure of particulate methane monooxygenase from Methylococcus capsulatus (Bath)
关键词 keywordsmembrane, OXIDOREDUCTASE; OXIDOREDUCTASE
实验方法 methodX-RAY DIFFRACTION
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3. Official assembly/model 理论 SAXS Official SAXS Profiles

页面只读取最新 assembly 计算结果。每一条曲线都对应明确的 PDB、official biological assembly 和 coordinate model。

3rgb__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

下载该曲线 .dat

3rgb__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 q (1/Angstrom) I(q)
100 个绘图点;横轴和纵轴均采用对数尺度。

3rgb__assembly_1__model_1 | P(r) · Pending

新版 assembly/model P(r) 尚未计算 此处仅保留位置,不展示旧数据 r (Angstrom) P(r)
P(r) 将按相同 assembly/model 分别计算和展示。
Rg(Guinier)42.04 Å
Rg(电子密度)40.95 Å
总 Rg41.56 Å
原子数19734
残基数2439
排除体积355700 ų
最大 q0.500 Å⁻¹
Assembly Model 结构单元 聚集说明 状态 CRYSOL 操作
1 1 3rgb__assembly_1__model_1 nonameric (9) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载
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4. 晶体学与实验 4. Crystallography & Experiment

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5. 实体与聚合物信息 Entities & Polymers (7)

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6. 折叠分类 (SCOP + CATH) 15 domains

CATH v4.4 (15 domains)

结构域编号 domain_id3rgbA01
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology120 — Jelly Rolls
同源超家族 H-superfamily homologous superfamily570 — Particulate methane monooxygenase, b subunit. Chain: A, domain 1
结构域编号 domain_id3rgbA02
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology287 — Helix Hairpins
同源超家族 H-superfamily homologous superfamily710 — Helix hairpin bin
结构域编号 domain_id3rgbA03
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology40 — Immunoglobulin-like
同源超家族 H-superfamily homologous superfamily1580 — Particulate methane monooxygenase, b subunit. Chain: A, domain 3
结构域编号 domain_id3rgbB00
类 Class class1 — Mainly Alpha
架构 Architecture architecture20 — Up-down Bundle
拓扑 Topology topology1450 — particulate methane monooxygenase, chain B
同源超家族 H-superfamily homologous superfamily10 — Ammonia/particulate methane monooxygenase, subunit A
结构域编号 domain_id3rgbC00
类 Class class1 — Mainly Alpha
架构 Architecture architecture20 — Up-down Bundle
拓扑 Topology topology1050 — Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2
同源超家族 H-superfamily homologous superfamily50 — Particulate methane monooxygenase subunit c2. Chain: C
结构域编号 domain_id3rgbE01
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology120 — Jelly Rolls
同源超家族 H-superfamily homologous superfamily570 — Particulate methane monooxygenase, b subunit. Chain: A, domain 1
结构域编号 domain_id3rgbE02
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology287 — Helix Hairpins
同源超家族 H-superfamily homologous superfamily710 — Helix hairpin bin
结构域编号 domain_id3rgbE03
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology40 — Immunoglobulin-like
同源超家族 H-superfamily homologous superfamily1580 — Particulate methane monooxygenase, b subunit. Chain: A, domain 3
结构域编号 domain_id3rgbF00
类 Class class1 — Mainly Alpha
架构 Architecture architecture20 — Up-down Bundle
拓扑 Topology topology1450 — particulate methane monooxygenase, chain B
同源超家族 H-superfamily homologous superfamily10 — Ammonia/particulate methane monooxygenase, subunit A
结构域编号 domain_id3rgbG00
类 Class class1 — Mainly Alpha
架构 Architecture architecture20 — Up-down Bundle
拓扑 Topology topology1050 — Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2
同源超家族 H-superfamily homologous superfamily50 — Particulate methane monooxygenase subunit c2. Chain: C
结构域编号 domain_id3rgbI01
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology120 — Jelly Rolls
同源超家族 H-superfamily homologous superfamily570 — Particulate methane monooxygenase, b subunit. Chain: A, domain 1
结构域编号 domain_id3rgbI02
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology287 — Helix Hairpins
同源超家族 H-superfamily homologous superfamily710 — Helix hairpin bin
结构域编号 domain_id3rgbI03
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology40 — Immunoglobulin-like
同源超家族 H-superfamily homologous superfamily1580 — Particulate methane monooxygenase, b subunit. Chain: A, domain 3
结构域编号 domain_id3rgbJ00
类 Class class1 — Mainly Alpha
架构 Architecture architecture20 — Up-down Bundle
拓扑 Topology topology1450 — particulate methane monooxygenase, chain B
同源超家族 H-superfamily homologous superfamily10 — Ammonia/particulate methane monooxygenase, subunit A
结构域编号 domain_id3rgbK00
类 Class class1 — Mainly Alpha
架构 Architecture architecture20 — Up-down Bundle
拓扑 Topology topology1050 — Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2
同源超家族 H-superfamily homologous superfamily50 — Particulate methane monooxygenase subunit c2. Chain: C
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7. 引用文献 (1)