|
1ADQ
CRYSTAL STRUCTURE OF A HUMAN IGM RHEUMATOID FACTOR FAB IN COMPLEX WITH ITS AUTOANTIGEN IGG FC
Deposited 1997-02-18
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain A
118–323(206 aa)
Fragment:FC
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7;CRYSTALS WERE GROWN BY HANGING DROP VAPOR DIFFUSION. THE HANGING DROPS CONSISTED OF 2UL OF PROTEIN SOLUTION CONTAINING EACH PROTEIN AT 1MG/ML IN 0.1 % SODIUM AZIDE, 20MM TRIS-HCL AT PH 7.0, MIXED WITH AN EQUAL VOLUME OF THE RESERVOIR SOLUTION TO BE SCREENED. CRYSTALS WERE OBTAINED WITH RESERVOIR SOLUTIONS CONTAINING 17.5 - 22.5 % (W/V) POLYETHYLENE GLYCOL (MEAN MW 8000) IN 0.1 % SODIUM AZIDE, 100MM TRIS-HCL, PH 7.0, AT TEMPERATURES BETWEEN 17.5 AND 21.5 (CELSIUS)., vapor diffusion - hanging drop
|
Resolution 3.15 Å
R-free 0.289
|
|
1BBJ
CRYSTAL STRUCTURE OF A CHIMERIC FAB' FRAGMENT OF AN ANTIBODY BINDING TUMOUR CELLS
Deposited 1992-04-30
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain H
1–98(98 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 3.10 Å
|
|
1BBJ
CRYSTAL STRUCTURE OF A CHIMERIC FAB' FRAGMENT OF AN ANTIBODY BINDING TUMOUR CELLS
Deposited 1992-04-30
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain B
1–98(98 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 3.10 Å
|
|
4B53
Crystal structure of the isolated IgG4 CH3 domain
Deposited 2012-08-02
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
222–327(106 aa)
Fragment:CH3 DOMAIN, RESIDUES 222-327
Chain B
222–327(106 aa)
Fragment:CH3 DOMAIN, RESIDUES 222-327
|
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
|
EDO 1,2-ETHANEDIOL × 5
PEG DI(HYDROXYETHYL)ETHER × 4
TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL × 1
ACT ACETATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;291 K;SITTING DROP AT 291K. RESERVOIR OF 100 MICROLITRE 22% PEG 3350 AND 150MM CALCIUM ACETATE. DROP SIZE 100 NANOLITRE PROTEIN AND 100 NANOLITRE RESERVOIR. PROTEIN CONCENTRATION OF 1.5MG/ML
|
Resolution 1.80 Å
R-free 0.237
|
|
4C54
Crystal structure of recombinant human IgG4 Fc
Deposited 2013-09-10
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Other combination
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
114–327(214 aa)
Fragment:FC FRAGMENT, RESIDUES 114-327
Chain B
114–327(214 aa)
Fragment:FC FRAGMENT, RESIDUES 114-327
|
Not recorded
|
MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID × 2
EDO 1,2-ETHANEDIOL × 9
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6.5;MES PH6.5. 18-20% PEG 20 000
|
Resolution 1.90 Å
R-free 0.209
|
|
4D2N
Crystal structure of deglycosylated serum-derived human IgG4 Fc
Deposited 2014-05-12
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain C
102–327(226 aa)
Fragment:FC FRAGMENT, RESIDUES 102-327
Chain D
102–327(226 aa)
Fragment:FC FRAGMENT, RESIDUES 102-327
|
Mutation:YES
Mutation:YES
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7;291 K;CRYSTALS WERE GROWN AT 291K USING A RESERVOIR OF 100MM BIS-TRIS PROPANE PH7.5, 20% PEG 3350 AND 200MM SODIUM CITRATE, AND A PROTEIN CONCENTRATION OF 6MG/ML.
|
Resolution 2.70 Å
R-free 0.254
|
|
4D2N
Crystal structure of deglycosylated serum-derived human IgG4 Fc
Deposited 2014-05-12
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
102–327(226 aa)
Fragment:FC FRAGMENT, RESIDUES 102-327
Chain B
102–327(226 aa)
Fragment:FC FRAGMENT, RESIDUES 102-327
|
Mutation:YES
Mutation:YES
|
GOL GLYCEROL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7;291 K;CRYSTALS WERE GROWN AT 291K USING A RESERVOIR OF 100MM BIS-TRIS PROPANE PH7.5, 20% PEG 3350 AND 200MM SODIUM CITRATE, AND A PROTEIN CONCENTRATION OF 6MG/ML.
|
Resolution 2.70 Å
R-free 0.254
|
|
5HVW
Monomeric IgG4 Fc
Deposited 2016-01-28
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Other combination
Homooligomer;Protein × 6
PDB declaration: hexameric
|
Chain A
115–324(210 aa)
|
Mutation:L351F, T366R, P395K, F405R, Y407E
|
ZN ZINC ION × 12
GOL GLYCEROL × 6
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;293 K;9 mM ZnCl2, 90 mM Hepes, pH 7.0, 18% PEG 6000 (w/v)
|
Resolution 1.95 Å
R-free 0.258
|
|
5HVW
Monomeric IgG4 Fc
Deposited 2016-01-28
|
Different construct
Different mutation/modification
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Other combination
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
115–324(210 aa)
|
Mutation:L351F, T366R, P395K, F405R, Y407E
|
ZN ZINC ION × 2
GOL GLYCEROL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;293 K;9 mM ZnCl2, 90 mM Hepes, pH 7.0, 18% PEG 6000 (w/v)
|
Resolution 1.95 Å
R-free 0.258
|
|
5LG1
Room temperature structure of human IgG4-Fc from crystals analysed in situ
Deposited 2016-07-05
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Other combination
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
114–327(214 aa)
Chain B
114–327(214 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 6.5;291 K;0.1M MES, 18-20% PEG 20 000
|
Resolution 2.70 Å
R-free 0.231
|
|
5W5M
Crystal structure of human IgG4-Sigma1 Fc fragment
Deposited 2017-06-15
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Other combination
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
106–327(222 aa)
Fragment:Sigma1 Fc fragment, UNP residues 106-327
Chain B
106–327(222 aa)
Fragment:Sigma1 Fc fragment, UNP residues 106-327
|
Not recorded
|
GOL GLYCEROL × 2
ACT ACETATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;293 K;9% (w/v) PEG 20K, 0.1 M sodium acetate, pH 5.5
|
Resolution 1.90 Å
R-free 0.225
|
|
5W5N
Crystal structure of human IgG4-Sigma2 Fc fragment
Deposited 2017-06-15
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Other combination
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
106–327(222 aa)
Fragment:Sigma2 Fc fragment, UNP residues 106-327
Chain B
106–327(222 aa)
Fragment:Sigma2 Fc fragment, UNP residues 106-327
|
Not recorded
|
GOL GLYCEROL × 2
ACT ACETATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;293 K;10% (w/v) PEG 20K, 0.1 M sodium acetate, 5.5, 5% (v/v) MPD
|
Resolution 1.85 Å
R-free 0.215
|
|
6WIB
Next generation monomeric IgG4 Fc
Deposited 2020-04-09
|
Different construct
Different mutation/modification
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Other combination
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
115–325(211 aa)
|
Mutation:L351F, T366R, P395K, F405R, Y407e, L432C, H433S, N434W, Y436L, T437C, Q438 deleted
|
ZN ZINC ION × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 6.5;298 K;0.01 M zinc sulfate heptahydrate; 0.1 M morpholineethanesulfonic acid (MES) monohydrate, pH 6.5, and 25% (w/v) PEG 550 MME at a protein concentration of 5.5 mg/mL
|
Resolution 2.55 Å
R-free 0.266
|
|
6WMH
Next generation monomeric IgG4 Fc
Deposited 2020-04-21
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain H
118–324(207 aa)
Fragment:domains Ch2 and Ch3
|
Mutation:M252Y, S254T, T256E, N297D, L351F, S354E, T366R, P395K, F405R, Y407E
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 7.5;295 K;DL-Glutamic acid monohydrate,
DL-Alanine,
Glycine,
DL-Lysine monohydrochloride,
DL-Serine,
Sodium HEPES, MOPS (acid),
Ethylene glycol,
PEG 8000
|
Resolution 2.30 Å
R-free 0.243
|
|
6WMH
Next generation monomeric IgG4 Fc
Deposited 2020-04-21
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
|
Chain A
118–324(207 aa)
Fragment:domains Ch2 and Ch3
|
Mutation:M252Y, S254T, T256E, N297D, L351F, S354E, T366R, P395K, F405R, Y407E
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 7.5;295 K;DL-Glutamic acid monohydrate,
DL-Alanine,
Glycine,
DL-Lysine monohydrochloride,
DL-Serine,
Sodium HEPES, MOPS (acid),
Ethylene glycol,
PEG 8000
|
Resolution 2.30 Å
R-free 0.243
|
|
6WNA
Next generation monomeric IgG4 Fc
Deposited 2020-04-22
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Other combination
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain H
118–324(207 aa)
Fragment:domains Ch2 and Ch3
|
Mutation:M252Y, S254T, T256E, L351F, S354E, T366R, P395K, F405R, Y407E,
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;295 K;0.2 M magnesium chloride hexahydrate, 30% 1,5-diaminopentane dihydrochloride, 0.1 M MES, pH 6 and 20% PEG 6000 at a protein concentration of 6 mg/mL
|
Resolution 2.40 Å
R-free 0.263
|
|
6WOL
Next generation monomeric IgG4 Fc bound to neonatal Fc receptor
Deposited 2020-04-24
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Other combination
Heteromer;Protein × 3
PDB declaration: trimeric
|
Chain H
117–326(210 aa)
Fragment:domains Ch3 and Ch4
|
Mutation:L351F, S354E, T366R, P395K, F405R, Y407E, L432C, H433S, N434Y, Y436L, T437C, Q438 deleted
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 6;295 K;0.2 M magnesium chloride hexahydrate, 1 M sodium iodide, 0.1 M MES, pH 6 and 20% PEG 6000 at a protein concentration of 6.35 mg/mL
|
Resolution 2.49 Å
R-free 0.270
|