4h0l

Cytochrome b6f Complex Crystal Structure from Mastigocladus laminosus with n-Side Inhibitor NQNO

Method: X-RAY DIFFRACTION
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Cytochrome b6

OrganismNot specified

UniProt P83791

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 16 Cytochrome b6-f complex subunit 4 × 2 (P83792) Apocytochrome f × 2 (P83793) Cytochrome b6-f complex iron-sulfur subunit × 2 (P83794) Cytochrome b6-f complex subunit 6 × 2 (P83795) Cytochrome b6-f complex subunit 7 × 2 (P83796) Cytochrome b6-f complex subunit 5 × 2 (P83797) Cytochrome b6-f complex subunit 8 × 2 (P83798) CADMIUM ION × 4 PROTOPORPHYRIN IX CONTAINING FE × 8 (7R,17E)-4-HYDROXY-N,N,N,7-TETRAMETHYL-7-[(8E)-OCTADEC-8-ENOYLOXY]-10-OXO-3,5,9-TRIOXA-4-PHOSPHAHEPTACOS-17-EN-1-AMINIUM 4-OXIDE × 4 UNDECYL-MALTOSIDE × 8 2-NONYL-4-HYDROXYQUINOLINE N-OXIDE × 2 CHLOROPHYLL A × 2 FE2/S2 (INORGANIC) CLUSTER × 2 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 2 BETA-CAROTENE × 2 water × 6 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name CYB6_MASLA
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–215; UniProt 1–215

Cytochrome b6-f complex subunit 4

OrganismNot specified

UniProt P83792

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 16 Cytochrome b6 × 2 (P83791) Apocytochrome f × 2 (P83793) Cytochrome b6-f complex iron-sulfur subunit × 2 (P83794) Cytochrome b6-f complex subunit 6 × 2 (P83795) Cytochrome b6-f complex subunit 7 × 2 (P83796) Cytochrome b6-f complex subunit 5 × 2 (P83797) Cytochrome b6-f complex subunit 8 × 2 (P83798) CADMIUM ION × 4 PROTOPORPHYRIN IX CONTAINING FE × 8 (7R,17E)-4-HYDROXY-N,N,N,7-TETRAMETHYL-7-[(8E)-OCTADEC-8-ENOYLOXY]-10-OXO-3,5,9-TRIOXA-4-PHOSPHAHEPTACOS-17-EN-1-AMINIUM 4-OXIDE × 4 UNDECYL-MALTOSIDE × 8 2-NONYL-4-HYDROXYQUINOLINE N-OXIDE × 2 CHLOROPHYLL A × 2 FE2/S2 (INORGANIC) CLUSTER × 2 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 2 BETA-CAROTENE × 2 water × 6 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PETD_MASLA
Isoform —
PDB entities 2
Chains and sequence ranges Author chain B; PDBConstruct 1–160; UniProt 1–160

Apocytochrome f

OrganismNot specified

UniProt P83793

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 16 Cytochrome b6 × 2 (P83791) Cytochrome b6-f complex subunit 4 × 2 (P83792) Cytochrome b6-f complex iron-sulfur subunit × 2 (P83794) Cytochrome b6-f complex subunit 6 × 2 (P83795) Cytochrome b6-f complex subunit 7 × 2 (P83796) Cytochrome b6-f complex subunit 5 × 2 (P83797) Cytochrome b6-f complex subunit 8 × 2 (P83798) CADMIUM ION × 4 PROTOPORPHYRIN IX CONTAINING FE × 8 (7R,17E)-4-HYDROXY-N,N,N,7-TETRAMETHYL-7-[(8E)-OCTADEC-8-ENOYLOXY]-10-OXO-3,5,9-TRIOXA-4-PHOSPHAHEPTACOS-17-EN-1-AMINIUM 4-OXIDE × 4 UNDECYL-MALTOSIDE × 8 2-NONYL-4-HYDROXYQUINOLINE N-OXIDE × 2 CHLOROPHYLL A × 2 FE2/S2 (INORGANIC) CLUSTER × 2 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 2 BETA-CAROTENE × 2 water × 6 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name CYF_MASLA
Isoform —
PDB entities 3
Chains and sequence ranges Author chain C; PDBConstruct 1–289; UniProt 45–333

Cytochrome b6-f complex iron-sulfur subunit

OrganismNot specified

UniProt P83794

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 16 Cytochrome b6 × 2 (P83791) Cytochrome b6-f complex subunit 4 × 2 (P83792) Apocytochrome f × 2 (P83793) Cytochrome b6-f complex subunit 6 × 2 (P83795) Cytochrome b6-f complex subunit 7 × 2 (P83796) Cytochrome b6-f complex subunit 5 × 2 (P83797) Cytochrome b6-f complex subunit 8 × 2 (P83798) CADMIUM ION × 4 PROTOPORPHYRIN IX CONTAINING FE × 8 (7R,17E)-4-HYDROXY-N,N,N,7-TETRAMETHYL-7-[(8E)-OCTADEC-8-ENOYLOXY]-10-OXO-3,5,9-TRIOXA-4-PHOSPHAHEPTACOS-17-EN-1-AMINIUM 4-OXIDE × 4 UNDECYL-MALTOSIDE × 8 2-NONYL-4-HYDROXYQUINOLINE N-OXIDE × 2 CHLOROPHYLL A × 2 FE2/S2 (INORGANIC) CLUSTER × 2 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 2 BETA-CAROTENE × 2 water × 6 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name UCRI_MASLA
Isoform —
PDB entities 4
Chains and sequence ranges Author chain D; PDBConstruct 1–179; UniProt 1–179

Cytochrome b6-f complex subunit 6

OrganismNot specified

UniProt P83795

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 16 Cytochrome b6 × 2 (P83791) Cytochrome b6-f complex subunit 4 × 2 (P83792) Apocytochrome f × 2 (P83793) Cytochrome b6-f complex iron-sulfur subunit × 2 (P83794) Cytochrome b6-f complex subunit 7 × 2 (P83796) Cytochrome b6-f complex subunit 5 × 2 (P83797) Cytochrome b6-f complex subunit 8 × 2 (P83798) CADMIUM ION × 4 PROTOPORPHYRIN IX CONTAINING FE × 8 (7R,17E)-4-HYDROXY-N,N,N,7-TETRAMETHYL-7-[(8E)-OCTADEC-8-ENOYLOXY]-10-OXO-3,5,9-TRIOXA-4-PHOSPHAHEPTACOS-17-EN-1-AMINIUM 4-OXIDE × 4 UNDECYL-MALTOSIDE × 8 2-NONYL-4-HYDROXYQUINOLINE N-OXIDE × 2 CHLOROPHYLL A × 2 FE2/S2 (INORGANIC) CLUSTER × 2 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 2 BETA-CAROTENE × 2 water × 6 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PETL_MASLA
Isoform —
PDB entities 5
Chains and sequence ranges Author chain E; PDBConstruct 1–32; UniProt 1–32

Cytochrome b6-f complex subunit 7

OrganismNot specified

UniProt P83796

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 16 Cytochrome b6 × 2 (P83791) Cytochrome b6-f complex subunit 4 × 2 (P83792) Apocytochrome f × 2 (P83793) Cytochrome b6-f complex iron-sulfur subunit × 2 (P83794) Cytochrome b6-f complex subunit 6 × 2 (P83795) Cytochrome b6-f complex subunit 5 × 2 (P83797) Cytochrome b6-f complex subunit 8 × 2 (P83798) CADMIUM ION × 4 PROTOPORPHYRIN IX CONTAINING FE × 8 (7R,17E)-4-HYDROXY-N,N,N,7-TETRAMETHYL-7-[(8E)-OCTADEC-8-ENOYLOXY]-10-OXO-3,5,9-TRIOXA-4-PHOSPHAHEPTACOS-17-EN-1-AMINIUM 4-OXIDE × 4 UNDECYL-MALTOSIDE × 8 2-NONYL-4-HYDROXYQUINOLINE N-OXIDE × 2 CHLOROPHYLL A × 2 FE2/S2 (INORGANIC) CLUSTER × 2 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 2 BETA-CAROTENE × 2 water × 6 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PETM_MASLA
Isoform —
PDB entities 6
Chains and sequence ranges Author chain F; PDBConstruct 1–35; UniProt 1–35

Cytochrome b6-f complex subunit 5

OrganismNot specified

UniProt P83797

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 16 Cytochrome b6 × 2 (P83791) Cytochrome b6-f complex subunit 4 × 2 (P83792) Apocytochrome f × 2 (P83793) Cytochrome b6-f complex iron-sulfur subunit × 2 (P83794) Cytochrome b6-f complex subunit 6 × 2 (P83795) Cytochrome b6-f complex subunit 7 × 2 (P83796) Cytochrome b6-f complex subunit 8 × 2 (P83798) CADMIUM ION × 4 PROTOPORPHYRIN IX CONTAINING FE × 8 (7R,17E)-4-HYDROXY-N,N,N,7-TETRAMETHYL-7-[(8E)-OCTADEC-8-ENOYLOXY]-10-OXO-3,5,9-TRIOXA-4-PHOSPHAHEPTACOS-17-EN-1-AMINIUM 4-OXIDE × 4 UNDECYL-MALTOSIDE × 8 2-NONYL-4-HYDROXYQUINOLINE N-OXIDE × 2 CHLOROPHYLL A × 2 FE2/S2 (INORGANIC) CLUSTER × 2 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 2 BETA-CAROTENE × 2 water × 6 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PETG_MASLA
Isoform —
PDB entities 7
Chains and sequence ranges Author chain G; PDBConstruct 1–37; UniProt 1–37

Cytochrome b6-f complex subunit 8

OrganismNot specified

UniProt P83798

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 16 Cytochrome b6 × 2 (P83791) Cytochrome b6-f complex subunit 4 × 2 (P83792) Apocytochrome f × 2 (P83793) Cytochrome b6-f complex iron-sulfur subunit × 2 (P83794) Cytochrome b6-f complex subunit 6 × 2 (P83795) Cytochrome b6-f complex subunit 7 × 2 (P83796) Cytochrome b6-f complex subunit 5 × 2 (P83797) CADMIUM ION × 4 PROTOPORPHYRIN IX CONTAINING FE × 8 (7R,17E)-4-HYDROXY-N,N,N,7-TETRAMETHYL-7-[(8E)-OCTADEC-8-ENOYLOXY]-10-OXO-3,5,9-TRIOXA-4-PHOSPHAHEPTACOS-17-EN-1-AMINIUM 4-OXIDE × 4 UNDECYL-MALTOSIDE × 8 2-NONYL-4-HYDROXYQUINOLINE N-OXIDE × 2 CHLOROPHYLL A × 2 FE2/S2 (INORGANIC) CLUSTER × 2 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL × 2 BETA-CAROTENE × 2 water × 6 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PETN_MASLA
Isoform —
PDB entities 8
Chains and sequence ranges Author chain H; PDBConstruct 1–29; UniProt 1–29

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id4h0l
Deposition date deposition_date2012-09-08
Structure title titleCytochrome b6f Complex Crystal Structure from Mastigocladus laminosus with n-Side Inhibitor NQNO
Keywords keywordsAlpha-helix, beta -sheet, Plastoquinol-plastocyanin oxidoreductase, Plastocyanin, None, Thylakoid membranes, PHOTOSYNTHESIS; PHOTOSYNTHESIS
Experimental Method methodX-RAY DIFFRACTION
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

4h0l__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

4h0l__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

4h0l__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)42.42 Å
Rg (electron density)41.32 Å
Total Rg41.63 Å
Atom count32426
Residues1900
Excluded volume294070 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 4h0l__assembly_1__model_1 hexadecameric (16) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (18)

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6. Fold Classification (SCOP + CATH) 8 domains

CATH v4.4 (8 domains)

Domain ID domain_id4h0lA00
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology810 — Cytochrome Bc1 Complex; Chain C
Homologous superfamily homologous superfamily10 — Cytochrome Bc1 Complex; Chain C
Domain ID domain_id4h0lB01
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology5 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces
Homologous superfamily homologous superfamily510 — Single helix bin
Domain ID domain_id4h0lB02
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology287 — Helix Hairpins
Homologous superfamily homologous superfamily980 — plastocyanin oxidoreductase
Domain ID domain_id4h0lC01
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily830 — Cytochrome f large domain
Domain ID domain_id4h0lC02
Class class2 — Mainly Beta
Architecture architecture40 — Beta Barrel
Topology topology50 — OB fold (Dihydrolipoamide Acetyltransferase, E2P)
Homologous superfamily homologous superfamily100 — RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain
Domain ID domain_id4h0lC03
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology5 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces
Homologous superfamily homologous superfamily700 — Single helix bin
Domain ID domain_id4h0lD01
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology5 — Single alpha-helices involved in coiled-coils or other helix-helix interfaces
Homologous superfamily homologous superfamily700 — Single helix bin
Domain ID domain_id4h0lD02
Class class2 — Mainly Beta
Architecture architecture102 — 3-layer Sandwich
Topology topology10 — Rieske Iron-sulfur Protein
Homologous superfamily homologous superfamily10 — Rieske [2Fe-2S] iron-sulphur domain
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7. Citations (1)