|
3J9T
Yeast V-ATPase state 1
Deposited 2015-02-23
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 28
PDB declaration: 28-meric
|
Chain N
1–118(118 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
50 mM Tris-HCl, 150 mM NaCl, 0.02% w/v dodecylmaltoside;pH 7.4;50 mM Tris-HCl, 150 mM NaCl, 0.02% w/v dodecylmaltoside
cryo-EM vitrification conditions
Blot for 23 seconds before freezing;77 K;Cryogen OTHER;Blot for 23 seconds before freezing in ethane/propane mixture (FEI VITROBOT MARK III).
|
Resolution 6.90 Å
|
|
3J9U
Yeast V-ATPase state 2
Deposited 2015-02-23
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 28
PDB declaration: 28-meric
|
Chain N
1–118(118 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
50 mM Tris-HCl, 150 mM NaCl, 0.02% w/v dodecylmaltoside;pH 7.4;50 mM Tris-HCl, 150 mM NaCl, 0.02% w/v dodecylmaltoside
cryo-EM vitrification conditions
Blot for 23 seconds before freezing;77 K;Cryogen OTHER;Blot for 23 seconds before freezing in ethane/propane mixture (FEI VITROBOT MARK III).
|
Resolution 7.60 Å
|
|
3J9V
Yeast V-ATPase state 3
Deposited 2015-02-23
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 28
PDB declaration: 28-meric
|
Chain N
1–118(118 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
50 mM Tris-HCl, 150 mM NaCl, 0.02% w/v dodecylmaltoside;pH 7.4;50 mM Tris-HCl, 150 mM NaCl, 0.02% w/v dodecylmaltoside
cryo-EM vitrification conditions
Blot for 23 seconds before freezing;77 K;Cryogen OTHER;Blot for 23 seconds before freezing in ethane/propane mixture (FEI VITROBOT MARK III).
|
Resolution 8.30 Å
|
|
4RND
Crystal Structure of the subunit DF-assembly of the eukaryotic V-ATPase.
Deposited 2014-10-24
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 4
PDB declaration: tetrameric
|
Chain B
1–118(118 aa)
Chain D
1–118(118 aa)
|
Not recorded
|
GOL GLYCEROL × 3
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5.6;291 K;0.1 M sodium citrate tribasic dehydrate, 1.2 M Ammonium citrate monobasic, ph 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 291K
|
Resolution 3.18 Å
R-free 0.232
|
|
5D80
Crystal Structure of Yeast V1-ATPase in the Autoinhibited Form
Deposited 2015-08-14
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 15
PDB declaration: pentadecameric
|
Chain O
1–118(118 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;291 K;8.25% PEG 8000, 0.25 M Ammonium Sulfate, 0.1 M HEPES pH 7.5, 0.05 M Strontium Chloride
|
Resolution 6.20 Å
R-free 0.302
|
|
5D80
Crystal Structure of Yeast V1-ATPase in the Autoinhibited Form
Deposited 2015-08-14
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein heterocomplex
Heteromer;Protein × 15
PDB declaration: pentadecameric
|
Chain o
1–118(118 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;291 K;8.25% PEG 8000, 0.25 M Ammonium Sulfate, 0.1 M HEPES pH 7.5, 0.05 M Strontium Chloride
|
Resolution 6.20 Å
R-free 0.302
|
|
5VOX
Yeast V-ATPase in complex with Legionella pneumophila effector SidK (rotational state 1)
Deposited 2017-05-03
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 33
PDB declaration: 33-meric
|
Chain N
1–118(118 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE-PROPANE
|
Resolution 6.80 Å
|
|
5VOY
Yeast V-ATPase in complex with Legionella pneumophila effector SidK (rotational state 2)
Deposited 2017-05-03
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 33
PDB declaration: 33-meric
|
Chain N
1–118(118 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE-PROPANE
|
Resolution 7.90 Å
|
|
5VOZ
Yeast V-ATPase in complex with Legionella pneumophila effector SidK (rotational state 3)
Deposited 2017-05-03
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 33
PDB declaration: 33-meric
|
Chain N
1–118(118 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE-PROPANE
|
Resolution 7.60 Å
|
|
6O7V
Saccharomyces cerevisiae V-ATPase Stv1-V1VO State 1
Deposited 2019-03-08
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 31
PDB declaration: 31-meric
|
Chain N
1–118(118 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE-PROPANE
|
Resolution 6.60 Å
|
|
6O7W
Saccharomyces cerevisiae V-ATPase Stv1-V1VO State 2
Deposited 2019-03-08
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 31
PDB declaration: 31-meric
|
Chain N
1–118(118 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE-PROPANE
|
Resolution 7.00 Å
|
|
6O7X
Saccharomyces cerevisiae V-ATPase Stv1-V1VO State 3
Deposited 2019-03-08
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 31
PDB declaration: 31-meric
|
Chain N
1–118(118 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE-PROPANE
|
Resolution 8.70 Å
|
|
7FDA
CryoEM Structure of Reconstituted V-ATPase, state1
Deposited 2021-07-16
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 31
PDB declaration: 31-meric
|
Chain N
1–118(118 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 4.20 Å
|
|
7FDB
CryoEM Structures of Reconstituted V-ATPase,State2
Deposited 2021-07-16
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 31
PDB declaration: 31-meric
|
Chain N
1–118(118 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 4.80 Å
|
|
7FDC
CryoEM Structures of Reconstituted V-ATPase, state3
Deposited 2021-07-16
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Insufficient information
Heteromer;Protein × 31
PDB declaration: 31-meric
|
Chain N
1–118(118 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 6.60 Å
|
|
7FDE
CryoEM Structures of Reconstituted V-ATPase, Oxr1 bound V1
Deposited 2021-07-16
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 16
PDB declaration: hexadecameric
|
Chain N
1–118(118 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.80 Å
|
|
9COP
Yeast RAVE bound to V-ATPase V1 complex
Deposited 2024-07-17
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 14
PDB declaration: 14-meric
|
Chain N
2–118(117 aa)
|
Not recorded
|
MG MAGNESIUM ION × 2
ADP ADENOSINE-5'-DIPHOSPHATE × 2
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.70 Å
|
|
9MOY
Reconstituted yeast V-ATPase bound to Rtc5p
Deposited 2024-12-28
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 32
PDB declaration: 32-meric
|
Chain N
1–118(118 aa)
|
Not recorded
|
ADP ADENOSINE-5'-DIPHOSPHATE × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE;Leica EM GP2
|
Resolution 3.60 Å
|
|
9NN1
Yeast V1-ATPase bound to Rtc5p
Deposited 2025-03-04
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 15
PDB declaration: pentadecameric
|
Chain N
1–118(118 aa)
|
Not recorded
|
ADP ADENOSINE-5'-DIPHOSPHATE × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.2
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.70 Å
|
|
9ODU
Yeast V-ATPase bound to Rtc5p, rotary state 2
Deposited 2025-04-27
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 32
PDB declaration: 32-meric
|
Chain N
1–118(118 aa)
|
Not recorded
|
ADP ADENOSINE-5'-DIPHOSPHATE × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.90 Å
|