4kty

Fibrin-stabilizing factor with a bound ligand

Method: X-RAY DIFFRACTION

1. 蛋白身份与相关结构 Protein Identity & Related Structures

Coagulation factor XIII A chain

Homo sapiens

UniProt P00488

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白异源复合物 异源复合物 蛋白 2 Peptide-like ligand × 1 CALCIUM ION × 3 GLYCEROL × 6 water × 2 待复核
2 蛋白异源复合物 异源复合物 蛋白 2 Peptide-like ligand × 1 CALCIUM ION × 3 GLYCEROL × 3 SULFATE ION × 1 water × 2 待复核

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 F13A_HUMAN
Isoform
PDB实体 1
链与序列区间 作者链 A; PDB构建体 8–738; UniProt 2–732 作者链 B; PDB构建体 8–738; UniProt 2–732

页面优先展示蛋白身份、当前 assembly、共同组分、聚集状态和跨 PDB 结构链接。 链映射与序列区间收在“数据证据”中;数据库内部编号、导入时间和 assembly 操作表达式仅用于维护,因此不在读者页面展示。

2. 结构基本信息 2. Structure Basics

条目编号 entry_id4kty
沉积日期 deposition_date2013-05-21
结构标题 titleFibrin-stabilizing factor with a bound ligand
关键词 keywordstransglutaminase, COAGULATION, TRANSFERASE, ACYLTRANSFERASE, ligand, calcium ions, TRANSFERASE-TRANSFERASE INHIBITOR complex; TRANSFERASE/TRANSFERASE INHIBITOR
实验方法 methodX-RAY DIFFRACTION

3. Official assembly/model 理论 SAXS Official SAXS Profiles

页面只读取最新 assembly 计算结果。每一条曲线都对应明确的 PDB、official biological assembly 和 coordinate model。

4kty__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

下载该曲线 .dat

4kty__assembly_1__model_1 | I(q)

10-2 10-1 106 107 q (1/Angstrom) I(q)
100 个绘图点;横轴和纵轴均采用对数尺度。

4kty__assembly_1__model_1 | P(r) · Pending

新版 assembly/model P(r) 尚未计算 此处仅保留位置,不展示旧数据 r (Angstrom) P(r)
P(r) 将按相同 assembly/model 分别计算和展示。
Rg(Guinier)30.90 Å
Rg(电子密度)30.32 Å
总 Rg30.83 Å
原子数5504
残基数699
排除体积97500 ų
最大 q0.500 Å⁻¹
Assembly Model 结构单元 聚集说明 状态 CRYSOL 操作
1 1 4kty__assembly_1__model_1 monomeric (1) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载
2 1 4kty__assembly_2__model_1 monomeric (1) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载

4. 晶体学与实验 4. Crystallography & Experiment

5. 实体与聚合物信息 Entities & Polymers (6)

6. 折叠分类 (SCOP + CATH) 16 domains

SCOP 2.08 (8 domains)

结构域编号 domain_idd4ktya1
类 Class classb — All beta proteins
折叠类型 Fold foldb.1 — Immunoglobulin-like beta-sandwich
超家族 Superfamily superfamilyb.1.18 — E set domains
家族 Family familyb.1.18.0 — automated matches
结构域编号 domain_idd4ktya2
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.3 — Cysteine proteinases
超家族 Superfamily superfamilyd.3.1 — Cysteine proteinases
家族 Family familyd.3.1.4 — Transglutaminase core
结构域编号 domain_idd4ktya3
类 Class classb — All beta proteins
折叠类型 Fold foldb.1 — Immunoglobulin-like beta-sandwich
超家族 Superfamily superfamilyb.1.5 — Transglutaminase, two C-terminal domains
家族 Family familyb.1.5.0 — automated matches
结构域编号 domain_idd4ktya4
类 Class classb — All beta proteins
折叠类型 Fold foldb.1 — Immunoglobulin-like beta-sandwich
超家族 Superfamily superfamilyb.1.5 — Transglutaminase, two C-terminal domains
家族 Family familyb.1.5.0 — automated matches
结构域编号 domain_idd4ktyb1
类 Class classb — All beta proteins
折叠类型 Fold foldb.1 — Immunoglobulin-like beta-sandwich
超家族 Superfamily superfamilyb.1.18 — E set domains
家族 Family familyb.1.18.0 — automated matches
结构域编号 domain_idd4ktyb2
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.3 — Cysteine proteinases
超家族 Superfamily superfamilyd.3.1 — Cysteine proteinases
家族 Family familyd.3.1.4 — Transglutaminase core
结构域编号 domain_idd4ktyb3
类 Class classb — All beta proteins
折叠类型 Fold foldb.1 — Immunoglobulin-like beta-sandwich
超家族 Superfamily superfamilyb.1.5 — Transglutaminase, two C-terminal domains
家族 Family familyb.1.5.0 — automated matches
结构域编号 domain_idd4ktyb4
类 Class classb — All beta proteins
折叠类型 Fold foldb.1 — Immunoglobulin-like beta-sandwich
超家族 Superfamily superfamilyb.1.5 — Transglutaminase, two C-terminal domains
家族 Family familyb.1.5.0 — automated matches

CATH v4.4 (8 domains)

结构域编号 domain_id4ktyA01
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology40 — Immunoglobulin-like
同源超家族 H-superfamily homologous superfamily10 — Immunoglobulins
结构域编号 domain_id4ktyA02
类 Class class3 — Alpha Beta
架构 Architecture architecture90 — Alpha-Beta Complex
拓扑 Topology topology260 — Coagulation Factor XIII; Chain A, domain 2
同源超家族 H-superfamily homologous superfamily10 — Transglutaminase-like
结构域编号 domain_id4ktyA03
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology40 — Immunoglobulin-like
同源超家族 H-superfamily homologous superfamily10 — Immunoglobulins
结构域编号 domain_id4ktyA04
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology40 — Immunoglobulin-like
同源超家族 H-superfamily homologous superfamily10 — Immunoglobulins
结构域编号 domain_id4ktyB01
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology40 — Immunoglobulin-like
同源超家族 H-superfamily homologous superfamily10 — Immunoglobulins
结构域编号 domain_id4ktyB02
类 Class class3 — Alpha Beta
架构 Architecture architecture90 — Alpha-Beta Complex
拓扑 Topology topology260 — Coagulation Factor XIII; Chain A, domain 2
同源超家族 H-superfamily homologous superfamily10 — Transglutaminase-like
结构域编号 domain_id4ktyB03
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology40 — Immunoglobulin-like
同源超家族 H-superfamily homologous superfamily10 — Immunoglobulins
结构域编号 domain_id4ktyB04
类 Class class2 — Mainly Beta
架构 Architecture architecture60 — Sandwich
拓扑 Topology topology40 — Immunoglobulin-like
同源超家族 H-superfamily homologous superfamily10 — Immunoglobulins

7. 引用文献 (1)