4mqv

Crystal complex of Rpa32c and Smarcal1 N-terminus

Method: X-RAY DIFFRACTION Dmax: 64.9 Å Quality: REASONABLE

1. Protein Identity and Related Structures Protein Identity & Related Structures

Replication protein A 32 kDa subunit

Homo sapiens

UniProt P15927

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain A; UniProt 202–270 Fragment:C-Terminal domain, UNP residues 202-270 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 × 1 (Q9NZC9) X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION;pH 8;298 K;25% PEG 4000, 0.2M Sodium Acetate, pH 8.0, VAPOR DIFFUSION, temperature 298K Resolution 1.95 Å R-free 0.220
2 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain C; UniProt 202–270 Fragment:C-Terminal domain, UNP residues 202-270 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 × 1 (Q9NZC9) X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION;pH 8;298 K;25% PEG 4000, 0.2M Sodium Acetate, pH 8.0, VAPOR DIFFUSION, temperature 298K Resolution 1.95 Å R-free 0.220

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

13 other PDB entries and 22 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name RFA2_HUMAN
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–69; UniProt 202–270 Author chain C; PDBConstruct 1–69; UniProt 202–270

SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1

OrganismNot specified

UniProt Q9NZC9

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain B; UniProt 5–30 Fragment:N-Terminal peptide, UNP residues 5-30 Replication protein A 32 kDa subunit × 1 (P15927) X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION;pH 8;298 K;25% PEG 4000, 0.2M Sodium Acetate, pH 8.0, VAPOR DIFFUSION, temperature 298K Resolution 1.95 Å R-free 0.220
2 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain D; UniProt 5–30 Fragment:N-Terminal peptide, UNP residues 5-30 Replication protein A 32 kDa subunit × 1 (P15927) X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION;pH 8;298 K;25% PEG 4000, 0.2M Sodium Acetate, pH 8.0, VAPOR DIFFUSION, temperature 298K Resolution 1.95 Å R-free 0.220

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

No other PDB entry for the same UniProt protein was found.

View Construct and Data Evidence
UniProt name SMAL1_HUMAN
Isoform
PDB entities 2
Chains and sequence ranges Author chain B; PDBConstruct 1–26; UniProt 5–30 Author chain D; PDBConstruct 1–26; UniProt 5–30

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 4mqv

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 4mqv
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2. Structure Basics 2. Structure Basics

Entry ID entry_id4mqv
Deposition date deposition_date2013-09-16
Structure title titleCrystal complex of Rpa32c and Smarcal1 N-terminus
Keywords keywordsWinged HTH Fold, Protein Binding, Nucleus; PROTEIN BINDING
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier18.68
Radius of gyration Rg (electron density) rg_electron17.89
Forward intensity I(0) i08195270.00
Molecular weight molecular_weight20503.0 kDa
Excluded volume excluded_volume25563 ų
Envelope volume envelope_volume30944 ų
Hydration-shell volume shell_volume15043 ų
Envelope diameter envelope_diameter63.8
Shell Rg shell_rg23.32
Envelope Rg envelope_rg18.26
Shape Rg shape_rg17.88
Total Rg total_rg18.82
Total atoms total_atoms1441
Residues n_residues182
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax64.9
Rg (real space) rg_real18.66
Rg uncertainty (real space) rg_real_error0.45
I(0) (real space) i0_real8.1950e+06
I(0) uncertainty (real space) i0_real_error1.0880e+05
Rg (reciprocal space) rg_reciprocal18.67
I(0) (reciprocal space) i0_reciprocal8195000.0000
Solution quality estimate total_estimate0.7087
Solution quality rating solution_quality REASONABLE a REASONABLE solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary20.5
Skewness Skewness skewness0.314
Kurtosis Kurtosis kurtosis-0.303
Angular range angular_range— – 0.4250 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha1551000.0000
Real-space data points n_real_points74
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.785; Stabil: 1.000; Sysdev: 0.313; Positv: 1.000; Valcen: 0.958; Smooth: 0.958

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (3)

7. Fold Classification (SCOP + CATH) 2 domains

CATH v4.4 (2 domains)

Domain ID domain_id4mqvA00
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology10 — Arc Repressor Mutant, subunit A
Homologous superfamily homologous superfamily10 — Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain
Domain ID domain_id4mqvC00
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology10 — Arc Repressor Mutant, subunit A
Homologous superfamily homologous superfamily10 — Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain

8. Citations (1)

9. Files and Curves (10)