4otc

4-OXALOCROTONATE TAUTOMERASE OBSERVED AS AN OCTODECAMER, TRIGONAL CRYSTAL FORM

Method: X-RAY DIFFRACTION Dmax: 142.8 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

4-OXALOCROTONATE TAUTOMERASE

Pseudomonas putida

UniProt Q01468

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein homooligomer Homooligomer Protein × 6 PDB declaration: hexameric(6) Consistent with protein copy count Chain A; UniProt 1–62 Not recorded SO4 SULFATE ION × 12 X-RAY DIFFRACTION X-ray crystallization conditions:pH 7;pH 7.0 Resolution 2.28 Å R-free 0.265
2 Protein homooligomer Homooligomer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain B; UniProt 1–62 Chain C; UniProt 1–62 Not recorded SO4 SULFATE ION × 4 X-RAY DIFFRACTION X-ray crystallization conditions:pH 7;pH 7.0 Resolution 2.28 Å R-free 0.265
3 Protein homooligomer Homooligomer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain D; UniProt 1–62 Chain E; UniProt 1–62 Not recorded SO4 SULFATE ION × 4 X-RAY DIFFRACTION X-ray crystallization conditions:pH 7;pH 7.0 Resolution 2.28 Å R-free 0.265
4 Protein homooligomer Homooligomer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain F; UniProt 1–62 Chain G; UniProt 1–62 Not recorded SO4 SULFATE ION × 4 X-RAY DIFFRACTION X-ray crystallization conditions:pH 7;pH 7.0 Resolution 2.28 Å R-free 0.265
5 Protein homooligomer Homooligomer Protein × 6 PDB declaration: hexameric(6) Consistent with protein copy count Chain H; UniProt 1–62 Chain I; UniProt 1–62 Not recorded SO4 SULFATE ION × 12 X-RAY DIFFRACTION X-ray crystallization conditions:pH 7;pH 7.0 Resolution 2.28 Å R-free 0.265
6 Protein homooligomer Homooligomer Protein × 6 PDB declaration: hexameric(6) Consistent with protein copy count Chain B; UniProt 1–62 Chain C; UniProt 1–62 Not recorded SO4 SULFATE ION × 12 X-RAY DIFFRACTION X-ray crystallization conditions:pH 7;pH 7.0 Resolution 2.28 Å R-free 0.265
7 Protein homooligomer Homooligomer Protein × 6 PDB declaration: hexameric(6) Consistent with protein copy count Chain F; UniProt 1–62 Chain G; UniProt 1–62 Not recorded SO4 SULFATE ION × 12 X-RAY DIFFRACTION X-ray crystallization conditions:pH 7;pH 7.0 Resolution 2.28 Å R-free 0.265
8 Protein homooligomer Homooligomer Protein × 6 PDB declaration: hexameric(6) Consistent with protein copy count Chain D; UniProt 1–62 Chain E; UniProt 1–62 Not recorded SO4 SULFATE ION × 12 X-RAY DIFFRACTION X-ray crystallization conditions:pH 7;pH 7.0 Resolution 2.28 Å R-free 0.265

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

13 other PDB entries and 60 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name 4OT1_PSEPU
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–62; UniProt 1–62 Author chain B; PDBConstruct 1–62; UniProt 1–62 Author chain C; PDBConstruct 1–62; UniProt 1–62 Author chain D; PDBConstruct 1–62; UniProt 1–62 Author chain E; PDBConstruct 1–62; UniProt 1–62 Author chain F; PDBConstruct 1–62; UniProt 1–62 Author chain G; PDBConstruct 1–62; UniProt 1–62 Author chain H; PDBConstruct 1–62; UniProt 1–62 Author chain I; PDBConstruct 1–62; UniProt 1–62

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 4otc

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 4otc
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2. Structure Basics 2. Structure Basics

Entry ID entry_id4otc
Deposition date deposition_date1998-10-15
Structure title title4-OXALOCROTONATE TAUTOMERASE OBSERVED AS AN OCTODECAMER, TRIGONAL CRYSTAL FORM
Keywords keywordsTAUTOMERASE, ISOMERASE, MICROBIAL BIODEGRADATION; ISOMERASE
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier45.26
Radius of gyration Rg (electron density) rg_electron45.37
Forward intensity I(0) i060598900.00
Molecular weight molecular_weight60044.0 kDa
Excluded volume excluded_volume74362 ų
Envelope volume envelope_volume133910 ų
Hydration-shell volume shell_volume27452 ų
Envelope diameter envelope_diameter153.1
Shell Rg shell_rg44.50
Envelope Rg envelope_rg42.53
Shape Rg shape_rg45.36
Total Rg total_rg45.33
Total atoms total_atoms4185
Residues n_residues540
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax142.8
Rg (real space) rg_real45.46
Rg uncertainty (real space) rg_real_error1.39
I(0) (real space) i0_real6.0600e+07
I(0) uncertainty (real space) i0_real_error1.0400e+06
Rg (reciprocal space) rg_reciprocal45.27
I(0) (reciprocal space) i0_reciprocal60580000.0000
Solution quality estimate total_estimate0.8096
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks3
Primary peak position r_peak_primary61.2
Skewness Skewness skewness0.207
Kurtosis Kurtosis kurtosis-0.587
Angular range angular_range— – 0.1750 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha1975000.0000
Real-space data points n_real_points36
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.833; Stabil: 0.997; Sysdev: 1.000; Positv: 1.000; Valcen: 0.858; Smooth: 0.173

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (3)

7. Fold Classification (SCOP + CATH) 18 domains

SCOP 2.08 (9 domains)

Domain ID domain_idd4otca_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.80 — Tautomerase/MIF
Superfamily Superfamily superfamilyd.80.1 — Tautomerase/MIF
Family Family familyd.80.1.1 — 4-oxalocrotonate tautomerase-like
Domain ID domain_idd4otcb_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.80 — Tautomerase/MIF
Superfamily Superfamily superfamilyd.80.1 — Tautomerase/MIF
Family Family familyd.80.1.1 — 4-oxalocrotonate tautomerase-like
Domain ID domain_idd4otcc_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.80 — Tautomerase/MIF
Superfamily Superfamily superfamilyd.80.1 — Tautomerase/MIF
Family Family familyd.80.1.1 — 4-oxalocrotonate tautomerase-like
Domain ID domain_idd4otcd_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.80 — Tautomerase/MIF
Superfamily Superfamily superfamilyd.80.1 — Tautomerase/MIF
Family Family familyd.80.1.1 — 4-oxalocrotonate tautomerase-like
Domain ID domain_idd4otce_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.80 — Tautomerase/MIF
Superfamily Superfamily superfamilyd.80.1 — Tautomerase/MIF
Family Family familyd.80.1.1 — 4-oxalocrotonate tautomerase-like
Domain ID domain_idd4otcf_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.80 — Tautomerase/MIF
Superfamily Superfamily superfamilyd.80.1 — Tautomerase/MIF
Family Family familyd.80.1.1 — 4-oxalocrotonate tautomerase-like
Domain ID domain_idd4otcg_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.80 — Tautomerase/MIF
Superfamily Superfamily superfamilyd.80.1 — Tautomerase/MIF
Family Family familyd.80.1.1 — 4-oxalocrotonate tautomerase-like
Domain ID domain_idd4otch_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.80 — Tautomerase/MIF
Superfamily Superfamily superfamilyd.80.1 — Tautomerase/MIF
Family Family familyd.80.1.1 — 4-oxalocrotonate tautomerase-like
Domain ID domain_idd4otci_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.80 — Tautomerase/MIF
Superfamily Superfamily superfamilyd.80.1 — Tautomerase/MIF
Family Family familyd.80.1.1 — 4-oxalocrotonate tautomerase-like

CATH v4.4 (9 domains)

Domain ID domain_id4otcA00
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology429 — Macrophage Migration Inhibitory Factor
Homologous superfamily homologous superfamily10 — Macrophage Migration Inhibitory Factor
Domain ID domain_id4otcB00
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology429 — Macrophage Migration Inhibitory Factor
Homologous superfamily homologous superfamily10 — Macrophage Migration Inhibitory Factor
Domain ID domain_id4otcC00
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology429 — Macrophage Migration Inhibitory Factor
Homologous superfamily homologous superfamily10 — Macrophage Migration Inhibitory Factor
Domain ID domain_id4otcD00
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology429 — Macrophage Migration Inhibitory Factor
Homologous superfamily homologous superfamily10 — Macrophage Migration Inhibitory Factor
Domain ID domain_id4otcE00
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology429 — Macrophage Migration Inhibitory Factor
Homologous superfamily homologous superfamily10 — Macrophage Migration Inhibitory Factor
Domain ID domain_id4otcF00
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology429 — Macrophage Migration Inhibitory Factor
Homologous superfamily homologous superfamily10 — Macrophage Migration Inhibitory Factor
Domain ID domain_id4otcG00
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology429 — Macrophage Migration Inhibitory Factor
Homologous superfamily homologous superfamily10 — Macrophage Migration Inhibitory Factor
Domain ID domain_id4otcH00
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology429 — Macrophage Migration Inhibitory Factor
Homologous superfamily homologous superfamily10 — Macrophage Migration Inhibitory Factor
Domain ID domain_id4otcI00
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology429 — Macrophage Migration Inhibitory Factor
Homologous superfamily homologous superfamily10 — Macrophage Migration Inhibitory Factor

8. Citations (2)

9. Files and Curves (10)