Cytochrome c peroxidase, mitochondrial
Saccharomyces cerevisiae
State in the Current Structure
| Assembly | Oligomeric State | Construct | Mutations and Modifications | Ligands, Ions and Associated Components | Method and Experimental Conditions | Structure Quality |
|---|---|---|---|---|---|---|
| 1 | Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric（2） Consistent with protein copy count | Chain A； UniProt 68–361 | Fragment：UNP residues 68-361 Mutation：W191F | Cytochrome c iso-1 × 1 （P00044） HEM PROTOPORPHYRIN IX CONTAINING FE × 2 | X-RAY DIFFRACTION X-ray crystallization conditions：VAPOR DIFFUSION, SITTING DROP；298 K；PEG 3350 15-15%, 100 mM NaAcetate, 175 mM NaCl | Resolution 2.01 Å R-free 0.278 |
| 2 | Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric（2） Consistent with protein copy count | Chain C； UniProt 68–361 | Fragment：UNP residues 68-361 Mutation：W191F | Cytochrome c iso-1 × 1 （P00044） HEM PROTOPORPHYRIN IX CONTAINING FE × 2 | X-RAY DIFFRACTION X-ray crystallization conditions：VAPOR DIFFUSION, SITTING DROP；298 K；PEG 3350 15-15%, 100 mM NaAcetate, 175 mM NaCl | Resolution 2.01 Å R-free 0.278 |
Other States of the Same Protein in the Database
Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.
| Other PDB | Difference from Current Entry 4P4Q | Assembly / Oligomeric State | Construct | Mutations and Modifications | Ligands, Ions and Non-polymers | Method and Experimental Conditions | Structure Quality |
|---|---|---|---|---|---|---|---|
| 1A2F PROBING THE STRENGTH AND CHARACTER OF AN ASP-HIS-X HYDROGEN BOND BY INTRODUCING BURIED CHARGES Deposited 1998-01-02 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
|
Mutation：M172K | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
dialysis；DIALYSIS AGAINST DISTILLED WATER, dialysis
|
Resolution 2.10 Å |
| 1A2G PROBING THE STRENGTH AND CHARACTER OF AN ASP-HIS-X HYDROGEN BOND BY INTRODUCING BURIED CHARGES Deposited 1998-01-02 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
|
Mutation：M231H | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
dialysis；DIALYSIS AGAINST DISTILLED WATER, dialysis
|
Resolution 2.10 Å |
| 1AA4 SPECIFICITY OF LIGAND BINDING IN A BURIED POLAR CAVITY OF CYTOCHROME C PEROXIDASE Deposited 1997-01-22 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
|
Mutation：T1M, T2K, P3T, W191G | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6；20% MPD, 40 MM PHOSPHATE PH 6.0
|
Resolution 2.10 Å |
| 1AC4 VARIATION IN THE STRENGTH OF A CH TO O HYDROGEN BOND IN AN ARTIFICIAL PROTEIN CAVITY (2,3,4-TRIMETHYL-1,3-THIAZOLE) Deposited 1997-02-12 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
|
Mutation：W191G | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 TMT 2,3,4-TRIMETHYL-1,3-THIAZOLE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6；20% MPD, 40 MM PHOSPHATE PH 6.0. A SINGLE CRYSTAL OF W191G WAS SOAKED IN 50MM 2,3,4-TRIMETHYLTHIAZOLE IN 40% MPD AND 60 MM PHOSPHATE AT PH 4.5.
|
Resolution 2.10 Å |
| 1AC8 VARIATION IN THE STRENGTH OF A CH TO O HYDROGEN BOND IN AN ARTIFICIAL PROTEIN CAVITY (3,4,5-TRIMETHYLTHIAZOLE) Deposited 1997-02-14 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
|
Mutation：W191G | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 TMZ 3,4,5-TRIMETHYL-1,3-THIAZOLE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6；20% MPD, 40 MM PHOSPHATE PH 6.0. A SINGLE CRYSTAL OF W191G WAS SOAKED IN 50MM 3,4,5-TRIMETHYLTHIAZOLE IN 40% MPD AND 60 MM PHOSPHATE AT PH 4.5.
|
Resolution 2.10 Å |
| 1AEB SPECIFICITY OF LIGAND BINDING TO A BURIED POLAR CAVITY AT THE ACTIVE SITE OF CYTOCHROME C PEROXIDASE (3-METHYLTHIAZOLE) Deposited 1997-02-24 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
|
Mutation：W191G | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 3MT 3-METHYLTHIAZOLIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6；20% MPD, 40 MM PHOSPHATE PH 6.0. A SINGLE CRYSTAL OF W191G WAS SOAKED IN 50MM 3-METHYLTHIAZOLIUM IODIDE IN 40% MPD AND 60 MM PHOSPHATE AT PH 4.5.
|
Resolution 2.10 Å |
| 1AED SPECIFICITY OF LIGAND BINDING TO A BURIED POLAR CAVITY AT THE ACTIVE SITE OF CYTOCHROME C PEROXIDASE (3,4-DIMETHYLTHIAZOLE) Deposited 1997-02-24 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
|
Mutation：W191G | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 DTI 3,4-DIMETHYLTHIAZOLIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6；20% MPD, 40 MM PHOSPHATE PH 6.0. A SINGLE CRYSTAL OF W191G WAS SOAKED IN 50MM 3,4-DIMETHYLTHIAZOLIUM IODIDE IN 40% MPD AND 60 MM PHOSPHATE AT PH 4.5.
|
Resolution 2.10 Å |
| 1AEE SPECIFICITY OF LIGAND BINDING TO A BURIED POLAR CAVITY AT THE ACTIVE SITE OF CYTOCHROME C PEROXIDASE (ANILINE) Deposited 1997-02-24 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
|
Mutation：W191G | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 ANL ANILINE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6；20% MPD, 40 MM PHOSPHATE PH 6.0. A SINGLE CRYSTAL OF W191G WAS SOAKED IN 50MM ANILINE IN 40% MPD AND 60 MM PHOSPHATE AT PH 4.5.
|
Resolution 2.10 Å |
| 1AEF SPECIFICITY OF LIGAND BINDING TO A BURIED POLAR CAVITY AT THE ACTIVE SITE OF CYTOCHROME C PEROXIDASE (3-AMINOPYRIDINE) Deposited 1997-02-24 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
|
Mutation：W191G | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 3AP 3-AMINOPYRIDINE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6；20% MPD, 40 MM PHOSPHATE PH 6.0. A SINGLE CRYSTAL OF W191G WAS SOAKED IN 50MM 3-AMINOPYRIDINE IN 40% MPD AND 60 MM PHOSPHATE AT PH 4.5.
|
Resolution 2.10 Å |
| 1AEG SPECIFICITY OF LIGAND BINDING TO A BURIED POLAR CAVITY AT THE ACTIVE SITE OF CYTOCHROME C PEROXIDASE (4-AMINOPYRIDINE) Deposited 1997-02-24 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
|
Mutation：W191G | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 4AP 4-AMINOPYRIDINE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6；20% MPD, 40 MM PHOSPHATE PH 6.0. A SINGLE CRYSTAL OF W191G WAS SOAKED IN 50MM 4-AMINOPYRIDINE IN 40% MPD AND 60 MM PHOSPHATE AT PH 4.5.
|
Resolution 2.10 Å |
| 1AEH SPECIFICITY OF LIGAND BINDING TO A BURIED POLAR CAVITY AT THE ACTIVE SITE OF CYTOCHROME C PEROXIDASE (2-AMINO-4-METHYLTHIAZOLE) Deposited 1997-02-24 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
|
Mutation：W191G | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 24T 2-AMINO-4-METHYLTHIAZOLE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6；20% MPD, 40 MM PHOSPHATE PH 6.0. A SINGLE CRYSTAL OF W191G WAS SOAKED IN 50MM 2-AMINO-4-METHYLTHIAZOLE IN 40% MPD AND 60 MM PHOSPHATE AT PH 4.5.
|
Resolution 2.10 Å |
| 1AEJ SPECIFICITY OF LIGAND BINDING TO A BURIED POLAR CAVITY AT THE ACTIVE SITE OF CYTOCHROME C PEROXIDASE (1-VINYLIMIDAZOLE) Deposited 1997-02-25 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
|
Mutation：W191G | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 NVI 1-VINYLIMIDAZOLE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6；20% MPD, 40 MM PHOSPHATE PH 6.0. A SINGLE CRYSTAL OF W191G WAS SOAKED IN 50MM 1-VINYLIMIDAZOLE, 5MM ETHANOL, IN 40% MPD AND 60 MM PHOSPHATE AT PH 4.5.
|
Resolution 2.10 Å |
| 1AEK SPECIFICITY OF LIGAND BINDING TO A BURIED POLAR CAVITY AT THE ACTIVE SITE OF CYTOCHROME C PEROXIDASE (INDOLINE) Deposited 1997-02-25 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
|
Mutation：W191G | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 IDM INDOLINE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6；20% MPD, 40 MM PHOSPHATE PH 6.0. A SINGLE CRYSTAL OF W191G WAS SOAKED IN 50MM INDOLINE, 10MM ETHANOL, IN 40% MPD AND 60 MM PHOSPHATE AT PH 4.5.
|
Resolution 2.10 Å |
| 1AEM SPECIFICITY OF LIGAND BINDING TO A BURIED POLAR CAVITY AT THE ACTIVE SITE OF CYTOCHROME C PEROXIDASE (IMIDAZO[1,2-A]PYRIDINE) Deposited 1997-02-25 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
|
Mutation：W191G | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 MPI IMIDAZO[1,2-A]PYRIDINE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6；20% MPD, 40 MM PHOSPHATE PH 6.0. A SINGLE CRYSTAL OF W191G WAS SOAKED IN 50MM IMIDAZO[1,2-A]PYRIDINE, 10MM ETHANOL, IN 40% MPD AND 60 MM PHOSPHATE AT PH 4.5.
|
Resolution 2.10 Å |
| 1AEN SPECIFICITY OF LIGAND BINDING TO A BURIED POLAR CAVITY AT THE ACTIVE SITE OF CYTOCHROME C PEROXIDASE (2-AMINO-5-METHYLTHIAZOLE) Deposited 1997-02-25 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
|
Mutation：W191G | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 25T 2-AMINO-5-METHYLTHIAZOLE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6；20% MPD, 40 MM PHOSPHATE PH 6.0. A SINGLE CRYSTAL OF W191G WAS SOAKED IN 50MM 3,4,5-TRIMETHYLTHIAZOLE IN 40% MPD AND 60 MM PHOSPHATE AT PH 4.5.
|
Resolution 2.10 Å |
| 1AEO SPECIFICITY OF LIGAND BINDING TO A BURIED POLAR CAVITY AT THE ACTIVE SITE OF CYTOCHROME C PEROXIDASE (2-AMINOPYRIDINE) Deposited 1997-02-25 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
|
Mutation：W191G | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 2AP 2-AMINOPYRIDINE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6；20% MPD, 40 MM PHOSPHATE PH 6.0. A SINGLE CRYSTAL OF W191G WAS SOAKED IN 50MM 2-AMINOPYRIDINE IN 40% MPD AND 60 MM PHOSPHATE AT PH 4.5.
|
Resolution 2.10 Å |
| 1AEQ VARIATION IN THE STRENGTH OF A CH TO O HYDROGEN BOND IN AN ARTIFICIAL PROTEIN CAVITY (2-ETHYLIMIDAZOLE) Deposited 1997-02-25 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
|
Mutation：W191G | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 2EZ 2-ETHYLIMIDAZOLE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6；20% MPD, 40 MM PHOSPHATE PH 6.0. A SINGLE CRYSTAL OF W191G WAS SOAKED IN 50MM 2-ETHYLIMIDAZOLE IN 40% MPD AND 60 MM PHOSPHATE AT PH 4.5.
|
Resolution 2.10 Å |
| 1AES SPECIFICITY OF LIGAND BINDING TO A BURIED POLAR CAVITY AT THE ACTIVE SITE OF CYTOCHROME C PEROXIDASE (IMIDAZOLE) Deposited 1997-02-25 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
|
Mutation：W191G | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 IMD IMIDAZOLE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6；20% MPD, 40 MM PHOSPHATE PH 6.0. A SINGLE CRYSTAL OF W191G WAS SOAKED IN 50MM IMIDAZOLE IN 40% MPD AND 60 MM PHOSPHATE AT PH 4.5.
|
Resolution 2.10 Å |
| 1AET VARIATION IN THE STRENGTH OF A CH TO O HYDROGEN BOND IN AN ARTIFICIAL PROTEIN CAVITY (1-METHYLIMIDAZOLE) Deposited 1997-02-25 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
|
Mutation：W191G | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 1MZ 1-METHYLIMIDAZOLE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6；20% MPD, 40 MM PHOSPHATE PH 6.0. A SINGLE CRYSTAL OF W191G WAS SOAKED IN 50MM 1-METHYLIMIDAZOLE IN 40% MPD AND 60 MM PHOSPHATE AT PH 4.5.
|
Resolution 2.10 Å |
| 1AEU SPECIFICITY OF LIGAND BINDING IN A POLAR CAVITY OF CYTOCHROME C PEROXIDASE (2-METHYLIMIDAZOLE) Deposited 1997-02-25 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
|
Mutation：W191G | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 2MZ 2-METHYLIMIDAZOLE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6；20% MPD, 40 MM PHOSPHATE PH 6.0. A SINGLE CRYSTAL OF W191G WAS SOAKED IN 50MM 2-METHYLIMIDAZOLE IN 40% MPD AND 60 MM PHOSPHATE AT PH 4.5.
|
Resolution 2.10 Å |
| 1AEV INTRODUCTION OF NOVEL SUBSTRATE OXIDATION INTO CYTOCHROME C PEROXIDASE BY CAVITY COMPLEMENTATION: OXIDATION OF 2-AMINOTHIAZOLE AND COVALENT MODIFICATION OF THE ENZYME (2-AMINOTHIAZOLE) Deposited 1997-02-25 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
|
Mutation：W191G | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 AMT 2-AMINOTHIAZOLE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6；20% MPD, 40 MM PHOSPHATE PH 6.0. A SINGLE CRYSTAL OF W191G WAS SOAKED IN 50MM 2-AMINOTHIAZOLE IN 40% MPD AND 60 MM PHOSPHATE AT PH 4.5.
|
Resolution 2.10 Å |
| 1BEJ INTERACTION BETWEEN PROXIMAL AND DISTALS REGIONS OF CYTOCHROME C PEROXIDASE Deposited 1998-05-16 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
|
Mutation：MET ILE ADDED AT N-TERMINUS, W191G | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6；100 MM BTP PH 6.0; 30% MPD
|
Resolution 2.40 Å |
| 1BEK EFFECT OF UNNATURAL HEME SUBSTITUTION ON KINETICS OF ELECTRON TRANSFER IN CYTOCHROME C PEROXIDASE Deposited 1998-05-16 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
|
Not recorded | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6；50 MM POTASSIUM PHOSPHATE; 30% MPD, pH 6
|
Resolution 2.20 Å |
| 1BEM INTERACTION BETWEEN PROXIMAL AND DISTALS REGIONS OF CYTOCHROME C PEROXIDASE Deposited 1998-05-16 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
|
Mutation：MET ILE ADDED AT N-TERMINUS, W191Q | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
100 MM MES/TRIS; 30% MPD
|
Resolution 2.20 Å |
| 1BEP EFFECT OF UNNATURAL HEME SUBSTITUTION ON KINETICS OF ELECTRON TRANSFER IN CYTOCHROME C PEROXIDASE Deposited 1998-05-16 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
|
Not recorded | CCH [7-ETHENYL-12-FORMYL-3,8,13,17-TERTRAMETHYL-21H,23H-PORPHINE-2,18-DIPROPANOATO(2)-N21,N22,N23,N24]IRON × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6；30% MPD; 50 MM POTASSIUM PHOSPHATE, PH 6.0
|
Resolution 2.20 Å |
| 1BEQ INTERACTION BETWEEN PROXIMAL AND DISTALS REGIONS OF CYTOCHROME C PEROXIDASE Deposited 1998-05-16 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
|
Mutation：MET ILE ADDED AT N-TERMINUS, W191Y | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6；30% MPD; 50 MM MES/TRIS, PH 6.0
|
Resolution 2.16 Å |
| 1BES INTERACTION BETWEEN PROXIMAL AND DISTALS REGIONS OF CYTOCHROME C PEROXIDASE Deposited 1998-05-16 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
|
Mutation：MET ILE ADDED AT N-TERMINUS, W191Y | CL CHLORIDE ION × 1 HEM PROTOPORPHYRIN IX CONTAINING FE × 1 MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6；30% MPD, 20 MM TRIS/MES PH 6.0, 150 MM NACL
|
Resolution 2.00 Å |
| 1BJ9 EFFECT OF UNNATURAL HEME SUBSTITUTION ON KINETICS OF ELECTRON TRANSFER IN CYTOCHROME C PEROXIDASE Deposited 1998-07-03 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
|
Mutation：T53I, D152G, N272D | DDH [7,12-DEACETYL-3,8,13,17-TETRAMETHYL-21H,23H-PORPHINE-2,18-DIPROPANOATO(2-)-N21,N22,N23,N24]-IRON × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6；pH 6
|
Resolution 2.20 Å |
| 1BVA MANGANESE BINDING MUTANT IN CYTOCHROME C PEROXIDASE Deposited 1998-09-15 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
68–361（294 aa）
|
Mutation：D37E,P44D,V45D | MN MANGANESE (II) ION × 1 HEM PROTOPORPHYRIN IX CONTAINING FE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6；20% MPD, 35 MM PHOSPHATE, PH 6.0, 5 MM MNSO4.
|
Resolution 1.89 Å |
| 1CCA THE ASP-HIS-FE TRIAD OF CYTOCHROME C PEROXIDASE CONTROLS THE REDUCTION POTENTIAL, ELECTRONIC STRUCTURE, AND COUPLING OF THE TRYPTOPHAN FREE-RADICAL TO THE HEME Deposited 1993-01-04 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
68–361（294 aa）
|
Not recorded | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 1.80 Å |
| 1CCB THE ASP-HIS-FE TRIAD OF CYTOCHROME C PEROXIDASE CONTROLS THE REDUCTION POTENTIAL, ELECTRONIC STRUCTURE, AND COUPLING OF THE TRYPTOPHAN FREE-RADICAL TO THE HEME Deposited 1993-01-04 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
68–361（294 aa）
|
Not recorded | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 2.10 Å |
| 1CCC THE ASP-HIS-FE TRIAD OF CYTOCHROME C PEROXIDASE CONTROLS THE REDUCTION POTENTIAL, ELECTRONIC STRUCTURE, AND COUPLING OF THE TRYPTOPHAN FREE-RADICAL TO THE HEME Deposited 1993-01-04 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
68–361（294 aa）
|
Not recorded | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 2.00 Å |
| 1CCE CONSTRUCTION OF A BIS-AQUO HEME ENZYME AND REPLACEMENT WITH EXOGENOUS LIGAND Deposited 1994-05-04 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
|
Not recorded | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 2.30 Å |
| 1CCG CONSTRUCTION OF A BIS-AQUO HEME ENZYME AND REPLACEMENT WITH EXOGENOUS LIGAND Deposited 1994-05-04 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
|
Not recorded | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 IMD IMIDAZOLE × 1 | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 2.10 Å |
| 1CCI HOW FLEXIBLE ARE PROTEINS? TRAPPING OF A FLEXIBLE LOOP Deposited 1996-12-18 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
|
Mutation：INS(MKT) AT N-TERMINUS, T53I, D152G, F202 | DMI 2,3-DIMETHYLIMIDAZOLIUM ION × 1 HEM PROTOPORPHYRIN IX CONTAINING FE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6；25% MPD, 70 MM PHOSPHATE PH 6.0
|
Resolution 2.40 Å |
| 1CCJ CONFORMER SELECTION BY LIGAND BINDING OBSERVED WITH PROTEIN CRYSTALLOGRAPHY Deposited 1997-01-22 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
|
Mutation：T1M, T2K, P3T, F202G | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
dialaysis；DIALYSIS AGAINST DISTILLED WATER, dialaysis
|
Resolution 2.10 Å |
| 1CCK ALTERING SUBSTRATE SPECIFICITY OF CYTOCHROME C PEROXIDASE TOWARDS A SMALL MOLECULAR SUBSTRATE PEROXIDASE BY SUBSTITUTING TYROSINE FOR PHE 202 Deposited 1998-01-02 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
|
Mutation：F202Y | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
dialaysis；DIALYSIS AGAINST DISTILLED WATER, dialaysis
|
Resolution 2.10 Å |
| 1CCL PROBING THE STRENGTH AND CHARACTER OF AN ASP-HIS-X HYDROGEN BOND BY INTRODUCING BURIED CHARGES Deposited 1998-01-02 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
|
Mutation：F202K | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
dialaysis；DIALYSIS AGAINST DISTILLED WATER, dialaysis
|
Resolution 2.00 Å |
| 1CCP X-RAY STRUCTURES OF RECOMBINANT YEAST CYTOCHROME C PEROXIDASE AND THREE HEME-CLEFT MUTANTS PREPARED BY SITE-DIRECTED MUTAGENESIS Deposited 1990-02-28 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
68–361（294 aa）
|
Not recorded | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 2.20 Å |
| 1CMP SMALL MOLECULE BINDING TO AN ARTIFICIALLY CREATED CAVITY AT THE ACTIVE SITE OF CYTOCHROME C PEROXIDASE Deposited 1993-11-23 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
|
Not recorded | DMI 2,3-DIMETHYLIMIDAZOLIUM ION × 1 HEM PROTOPORPHYRIN IX CONTAINING FE × 1 | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 1.90 Å |
| 1CMQ SMALL MOLECULE BINDING TO AN ARTIFICIALLY CREATED CAVITY AT THE ACTIVE SITE OF CYTOCHROME C PEROXIDASE Deposited 1993-11-23 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
|
Not recorded | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 2.30 Å |
| 1CMT THE ROLE OF ASPARTATE-235 IN THE BINDING OF CATIONS TO AN ARTIFICIAL CAVITY AT THE RADICAL SITE OF CYTOCHROME C PEROXIDASE Deposited 1995-04-11 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
|
Not recorded | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 2.10 Å |
| 1CMU THE ROLE OF ASPARTATE-235 IN THE BINDING OF CATIONS TO AN ARTIFICIAL CAVITY AT THE RADICAL SITE OF CYTOCHROME C PEROXIDASE Deposited 1995-04-10 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
|
Not recorded | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 2.10 Å |
| 1CPD A CATION BINDING MOTIF STABILIZES THE COMPOUND I RADICAL OF CYTOCHROME C PEROXIDASE Deposited 1994-08-18 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
68–361（294 aa）
|
Not recorded | NH4 AMMONIUM ION × 1 HEM PROTOPORPHYRIN IX CONTAINING FE × 1 | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 2.20 Å |
| 1CPE A CATION BINDING MOTIF STABILIZES THE COMPOUND I RADICAL OF CYTOCHROME C PEROXIDASE Deposited 1994-08-18 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
68–361（294 aa）
|
Not recorded | K POTASSIUM ION × 1 HEM PROTOPORPHYRIN IX CONTAINING FE × 1 | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 2.20 Å |
| 1CPF A CATION BINDING MOTIF STABILIZES THE COMPOUND I RADICAL OF CYTOCHROME C PEROXIDASE Deposited 1994-08-18 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
68–361（294 aa）
|
Not recorded | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL × 1 | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 2.20 Å |
| 1CPG A CATION BINDING MOTIF STABILIZES THE COMPOUND I RADICAL OF CYTOCHROME C PEROXIDASE Deposited 1994-08-18 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
|
Not recorded | K POTASSIUM ION × 1 HEM PROTOPORPHYRIN IX CONTAINING FE × 1 | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 2.20 Å |
| 1CYF IDENTIFYING THE PHYSIOLOGICAL ELECTRON TRANSFER SITE OF CYTOCHROME C PEROXIDASE BY STRUCTURE-BASED ENGINEERING Deposited 1995-07-03 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
68–361（294 aa）
|
Mutation：INS(MET ILE AT N-TERMINUS), C128A, A193C | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 2.35 Å |
| 1DCC 2.2 ANGSTROM STRUCTURE OF OXYPEROXIDASE: A MODEL FOR THE ENZYME:PEROXIDE COMPLEX Deposited 1994-06-01 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
68–361（294 aa）
|
Not recorded | OXY OXYGEN MOLECULE × 1 HEM PROTOPORPHYRIN IX CONTAINING FE × 1 | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 2.20 Å |
| 1DJ1 CRYSTAL STRUCTURE OF R48A MUTANT OF CYTOCHROME C PEROXIDASE Deposited 1999-11-30 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
|
Mutation：R48A | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 6；291 K；POTASSIUM PHOSPHATE, 2-METHYL-2,4-PENTANEDIOL, pH 6, VAPOR DIFFUSION, SITTING DROP, temperature 291K
|
Resolution 1.93 Å |
| 1DJ5 CRYSTAL STRUCTURE OF R48A MUTANT OF CYTOCHROME C PEROXIDASE WITH N-HYDROXYGUANIDINE BOUND Deposited 1999-12-01 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
|
Mutation：R48A | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 HGU N-HYDROXYGUANIDINE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 6；291 K；POTASSIUM PHOSPHATE, 2-METHYL-2,4-PENTANEDIOL, N-HYDROXYGUANIDINE, pH 6, VAPOR DIFFUSION, SITTING DROP, temperature 291K
|
Resolution 1.93 Å |
| 1DS4 CYTOCHROME C PEROXIDASE H175G MUTANT, IMIDAZOLE COMPLEX, PH 6, 100K Deposited 2000-01-07 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
70–361（292 aa）
|
Mutation：H175G | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 IMD IMIDAZOLE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 6；291 K；MPD, MES, PH 6, IMIDAZOLE, VAPOR DIFFUSION, SITTING DROP, temperature 291K
|
Resolution 2.02 Å |
| 1DSE CYTOCHROME C PEROXIDASE H175G MUTANT, IMIDAZOLE COMPLEX, WITH PHOSPHATE BOUND, PH 6, 100K Deposited 2000-01-07 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
70–361（292 aa）
|
Mutation：H175G | PO4 PHOSPHATE ION × 1 HEM PROTOPORPHYRIN IX CONTAINING FE × 1 IMD IMIDAZOLE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
MICRODIALYSIS；pH 6；277 K；phosphate, imidazole, pH 6, MICRODIALYSIS, temperature 277K
|
Resolution 2.00 Å |
| 1DSG CYTOCHROME C PEROXIDASE H175G MUTANT, IMIDAZOLE COMPLEX AT PH 5, ROOM TEMPERATURE. Deposited 2000-01-07 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
70–361（292 aa）
|
Mutation：H175G | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 IMD IMIDAZOLE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
MICRODIALYSIS；pH 5.2；288 K；MES, imidazole, pH 5.2, MICRODIALYSIS, temperature 288K
|
Resolution 2.56 Å |
| 1DSO CYTOCHROME C PEROXIDASE H175G MUTANT, IMIDAZOLE COMPLEX AT PH 6, ROOM TEMPERATURE. Deposited 2000-01-07 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
70–361（292 aa）
|
Mutation：H175G | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 IMD IMIDAZOLE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
MICRODIALYSIS；pH 6；288 K；MES, imidazole, pH 6, MICRODIALYSIS, temperature 288K
|
Resolution 2.03 Å |
| 1DSP CYTOCHROME C PEROXIDASE H175G MUTANT, IMIDAZOLE COMPLEX AT PH 7, ROOM TEMPERATURE. Deposited 2000-01-07 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
70–361（292 aa）
|
Mutation：H175G | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 IMD IMIDAZOLE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
MICRODIALYSIS；pH 7；288 K；MES, imidazole, pH 7, MICRODIALYSIS, temperature 288K
|
Resolution 2.03 Å |
| 1EBE Laue diffraction study on the structure of cytochrome c peroxidase compound I Deposited 2001-07-25 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
68–361（294 aa）
|
Not recorded | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 O OXYGEN ATOM × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6；SEE REFERENCE EDWARDS ET AL. BIOCHEMISTRY 26, 1503-1511 (1987), pH 6.00
|
Resolution 2.20 Å |
| 1JCI Stabilization of the Engineered Cation-binding Loop in Cytochrome c Peroxidase (CcP) Deposited 2001-06-09 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
68–361（294 aa）
|
Mutation：A176T, G192T, A194N, N195P, T199D, E201S | K POTASSIUM ION × 1 HEM PROTOPORPHYRIN IX CONTAINING FE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 6；277 K；2-Methyl-2,4-Pentanediol, potassium phosphate, pH 6.0, vapor diffusion, sitting drop, temperature 277K
|
Resolution 1.90 Å R-free 0.199 |
| 1JDR Crystal Structure of a Proximal Domain Potassium Binding Variant of Cytochrome c Peroxidase Deposited 2001-06-14 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
68–361（294 aa）
|
Mutation：A176T, G192T, A194N, T199D, E201S | K POTASSIUM ION × 1 HEM PROTOPORPHYRIN IX CONTAINING FE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 6；277 K；2,5-methyl-4-pentanediol, potassium phosphate, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 277K
|
Resolution 1.50 Å R-free 0.234 |
| 1KOK Crystal Structure of Mesopone Cytochrome c Peroxidase (MpCcP) Deposited 2001-12-20 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
68–361（294 aa）
|
Not recorded | HIF FE(III)-(4-MESOPORPHYRINONE) × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 6；277 K；2-Methyl-2,4-Pentanediol, potassium phosphate, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 277K
|
Resolution 1.70 Å R-free 0.207 |
| 1KRJ Engineering Calcium-binding site into Cytochrome c Peroxidase (CcP) Deposited 2002-01-09 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
68–361（294 aa）
Fragment：Proximal Cation-binding Loop
|
Mutation：A176T, G192D, A194T, T199D, E201S | K POTASSIUM ION × 1 HEM PROTOPORPHYRIN IX CONTAINING FE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 6；277 K；2-Methyl-2,4-Pentanediol (MPD), potassium phosphate, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 277K
|
Resolution 2.00 Å |
| 1KXM Crystal structure of Cytochrome c Peroxidase with a Proposed Electron Transfer Pathway Excised to Form a Ligand Binding Channel. Deposited 2002-02-01 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
72–362（291 aa）
Fragment：RESIDUES 72-362, NUMBERED 4-292
|
Mutation：P190G | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 BZI BENZIMIDAZOLE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 6；298 K；MPD, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 298.0K
|
Resolution 1.74 Å R-free 0.214 |
| 1KXN Crystal Structure of Cytochrome c Peroxidase with a Proposed Electron Transfer Pathway Excised to Form a Ligand Binding Channel. Deposited 2002-02-01 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
72–362（291 aa）
Fragment：RESIDUES 72-362, NUMBERED 4-292
|
Mutation：P190G | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 6；298 K；MPD, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K
|
Resolution 1.80 Å R-free 0.194 |
| 1MK8 Crystal Structure of a Mutant Cytochrome c Peroxidase showing a Novel Trp-Tyr Covalent Cross-link Deposited 2002-08-28 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
68–361（294 aa）
|
Mutation：H52Y | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 6；277 K；2-Methyl-2,4-Pentanediol (MPD), tris-phosphate, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 277K
|
Resolution 1.65 Å R-free 0.198 |
| 1MKQ Crystal Structure of the Mutant Variant of Cytochrome c Peroxidase in the 'Open' Uncross-linked form Deposited 2002-08-29 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
68–361（294 aa）
|
Mutation：H52Y | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 6；277 K；2-Methyl-2,4-Pentanediol (MPD), Tris-phosphate, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 277K
|
Resolution 1.64 Å R-free 0.208 |
| 1MKR Crystal Structure of a Mutant Variant of Cytochrome c Peroxidase (Plate like crystals) Deposited 2002-08-29 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
68–361（294 aa）
|
Mutation：H52Y | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 6；277 K；2-Methyl-2,4-Pentanediol (MPD), Tris-phosphate buffer, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 277K
|
Resolution 1.58 Å R-free 0.219 |
| 1ML2 Crystal Structure of a Mutant Variant of Cytochrome c Peroxidase with Zn(II)-(20-oxo-Protoporphyrin IX) Deposited 2002-08-29 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
68–361（294 aa）
|
Mutation：H52Y | ZEM 20-OXO-PROTOPORPHYRIN IX CONTAINING ZN(II) × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 6；277 K；2-Methyl-2,4-Pentanediol (MPD), tris-phosphate, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 277K
|
Resolution 1.65 Å R-free 0.215 |
| 1RYC CYTOCHROME C PEROXIDASE W191G FROM SACCHAROMYCES CEREVISIAE Deposited 1996-05-10 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–361（361 aa）
|
Mutation：W191G | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 BZI BENZIMIDAZOLE × 1 | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 1.80 Å |
| 1S6V Structure of a cytochrome c peroxidase-cytochrome c site specific cross-link Deposited 2004-01-27 | Different construct Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
68–361（294 aa）
|
Mutation：C128A, V197C | IOD IODIDE ION × 1 HEC HEME C × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；298 K；PEG 3350, KI, VAPOR DIFFUSION, SITTING DROP, temperature 298K
|
Resolution 1.88 Å R-free 0.243 |
| 1S6V Structure of a cytochrome c peroxidase-cytochrome c site specific cross-link Deposited 2004-01-27 | Different construct Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain C
68–361（294 aa）
|
Mutation：C128A, V197C | HEC HEME C × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；298 K；PEG 3350, KI, VAPOR DIFFUSION, SITTING DROP, temperature 298K
|
Resolution 1.88 Å R-free 0.243 |
| 1S73 Crystal Structure of Mesopone Cytochrome c Peroxidase (R-isomer) [MpCcP-R] Deposited 2004-01-28 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
68–361（294 aa）
|
Not recorded | FMI FE-(4-MESOPORPHYRINONE)-R-ISOMER × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 6；277 K；tris-phosphate buffer, 2-methyl-2,4-pentanediol, pH 6, VAPOR DIFFUSION, SITTING DROP, temperature 277K
|
Resolution 1.53 Å R-free 0.202 |
| 1SBM Crystal Structure of Reduced Mesopone cytochrome c peroxidase (R-isomer) Deposited 2004-02-10 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
68–361（294 aa）
|
Not recorded | FMI FE-(4-MESOPORPHYRINONE)-R-ISOMER × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 6；277 K；2-methyl-2,4-pentanediol (MPD), 100mM potassium phosphate, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 277K
|
Resolution 1.69 Å R-free 0.200 |
| 1SDQ Structure of reduced-NO adduct of mesopone cytochrome c peroxidase Deposited 2004-02-13 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
68–361（294 aa）
|
Not recorded | FMI FE-(4-MESOPORPHYRINONE)-R-ISOMER × 1 NO NITRIC OXIDE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 6；277 K；2-methyl-2,4-pentanediol (MPD), 50mM tris-phosphate, pH 6, VAPOR DIFFUSION, SITTING DROP, temperature 277K
|
Resolution 1.69 Å R-free 0.215 |
| 1SOG Cyrstal Structure of Cytochrome c Peroxidase Mutant: CcPK2M2 Deposited 2004-03-14 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
68–361（294 aa）
Fragment：CcPK2M2
|
Mutation：A176T, G192T, A194N, T199D, E201S, M230L, M231Q | K POTASSIUM ION × 1 HEM PROTOPORPHYRIN IX CONTAINING FE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 6；277 K；MPD, Tris-phosphate, 18crown6, 15crown5, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 277K
|
Resolution 1.85 Å R-free 0.201 |
| 1STQ Cyrstal Structure of Cytochrome c Peroxidase Mutant: CcPK2M3 Deposited 2004-03-25 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
68–361（294 aa）
|
Mutation：M172S, A176T, G192T, A194N, T199D, E201S, M230L, M231Q | K POTASSIUM ION × 1 HEM PROTOPORPHYRIN IX CONTAINING FE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 6；277 K；MPD, Potassium Phosphate, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 277K
|
Resolution 1.82 Å R-free 0.216 |
| 1U74 Electron Transfer Complex between cytochrome C and cytochrome C peroxidase Deposited 2004-08-02 | Different construct Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
68–361（294 aa）
Fragment：1.11.1.5
|
Not recorded | PO4 PHOSPHATE ION × 1 ZNH PROTOPORPHYRIN IX CONTAINING ZN × 1 HEM PROTOPORPHYRIN IX CONTAINING FE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7；298 K；PEG 3350, sodium chloride, n-octyl-beta-D-glucoside, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K
|
Resolution 2.40 Å R-free 0.287 |
| 1U74 Electron Transfer Complex between cytochrome C and cytochrome C peroxidase Deposited 2004-08-02 | Different construct Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain C
68–361（294 aa）
Fragment：1.11.1.5
|
Not recorded | PO4 PHOSPHATE ION × 1 ZNH PROTOPORPHYRIN IX CONTAINING ZN × 1 HEM PROTOPORPHYRIN IX CONTAINING FE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7；298 K；PEG 3350, sodium chloride, n-octyl-beta-D-glucoside, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K
|
Resolution 2.40 Å R-free 0.287 |
| 1Z53 The 1.13 Angstrom Structure of Iron-free Cytochrome c Peroxidase Deposited 2005-03-17 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
68–361（294 aa）
|
Not recorded | PP9 PROTOPORPHYRIN IX × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 6；277 K；30% 2-methyl-2,4-pentanediol (MPD), 50 mM Tris-phosphate, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 277K
|
Resolution 1.13 Å R-free 0.177 |
| 1ZBY High-Resolution Crystal Structure of Native (Resting) Cytochrome c Peroxidase (CcP) Deposited 2005-04-09 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
68–361（294 aa）
|
Not recorded | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 6；277 K；30% 2-methyl-2,4-pentanediol (MPD), 50mM Tris-phosphate, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 277K
|
Resolution 1.20 Å R-free 0.149 |
| 1ZBZ High-Resolution Crystal Structure of Compound I intermediate of Cytochrome c Peroxidase (CcP) Deposited 2005-04-09 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
68–361（294 aa）
|
Not recorded | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 6；277 K；30% 2-methyl-2,4-pentanediol (MPD), 50mM Tris-phosphate buffer, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 277K
|
Resolution 1.29 Å R-free 0.155 |
| 2ANZ cytochrome c peroxidase in complex with 2,6-diaminopyridine Deposited 2005-08-11 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
|
Mutation：W191G | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 26D PYRIDINE-2,6-DIAMINE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 6；310 K；MES, MPD, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 310K
|
Resolution 1.75 Å R-free 0.210 |
| 2AQD cytochrome c peroxidase (CCP) in complex with 2,5-diaminopyridine Deposited 2005-08-17 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
Fragment：cytochrome c peroxidase
|
Mutation：W191G | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 DA1 PYRIDINE-2,5-DIAMINE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7；310 K；MPD, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 310K
|
Resolution 1.35 Å R-free 0.163 |
| 2AS1 cytochrome c peroxidase in complex with thiopheneamidine Deposited 2005-08-22 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
Fragment：cytochrome c peroxidase
|
Mutation：W191G | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 TP5 THIOPHENE-3-CARBOXIMIDAMIDE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7；291 K；MPD, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 291K
|
Resolution 1.55 Å R-free 0.200 |
| 2AS2 cytochrome c peroxidase in complex with 2-iminopiperidine Deposited 2005-08-22 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
Fragment：cytochrome c peroxidase
|
Mutation：W191G | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 2IM PIPERIDIN-2-IMINE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7；291 K；MPD, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 291K
|
Resolution 1.45 Å R-free 0.177 |
| 2AS3 cytochrome c peroxidase in complex with phenol Deposited 2005-08-22 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
Fragment：cytochrome c peroxidase
|
Mutation：W191G | K POTASSIUM ION × 1 HEM PROTOPORPHYRIN IX CONTAINING FE × 1 IPH PHENOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；291 K；MPD, acetate, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
|
Resolution 1.40 Å R-free 0.188 |
| 2AS4 cytochrome c peroxidase in complex with 3-fluorocatechol Deposited 2005-08-22 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
Fragment：cytochrome c peroxidase
|
Mutation：W191G | K POTASSIUM ION × 1 HEM PROTOPORPHYRIN IX CONTAINING FE × 1 3FA 3-FLUOROBENZENE-1,2-DIOL × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.5；291 K；MPD, acetate, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
|
Resolution 1.30 Å R-free 0.175 |
| 2AS6 cytochrome c peroxidase in complex with cyclopentylamine Deposited 2005-08-22 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
Fragment：cytochrome c peroxidase
|
Mutation：W191G | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 1CB CYCLOPENTANAMINE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7；291 K；MPD, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 291K
|
Resolution 1.45 Å R-free 0.183 |
| 2B0Z Crystal structure of the protein-protein complex between F82I cytochrome c and cytochrome c peroxidase Deposited 2005-09-15 | Different construct Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
68–361（294 aa）
|
Not recorded | ZNH PROTOPORPHYRIN IX CONTAINING ZN × 1 HEC HEME C × 1 | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 2.70 Å R-free 0.289 |
| 2B10 Crystal Structure of the Protein-Protein Complex between F82S cytochrome c and cytochrome c peroxidase Deposited 2005-09-15 | Different construct Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
68–361（294 aa）
|
Not recorded | ZNH PROTOPORPHYRIN IX CONTAINING ZN × 1 HEM PROTOPORPHYRIN IX CONTAINING FE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7；298 K；PEG 3350, NaCl, BOG, pH 7, VAPOR DIFFUSION, SITTING DROP, temperature 298K
|
Resolution 2.80 Å R-free 0.306 |
| 2B10 Crystal Structure of the Protein-Protein Complex between F82S cytochrome c and cytochrome c peroxidase Deposited 2005-09-15 | Different construct Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain C
68–361（294 aa）
|
Not recorded | ZNH PROTOPORPHYRIN IX CONTAINING ZN × 1 HEM PROTOPORPHYRIN IX CONTAINING FE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7；298 K；PEG 3350, NaCl, BOG, pH 7, VAPOR DIFFUSION, SITTING DROP, temperature 298K
|
Resolution 2.80 Å R-free 0.306 |
| 2B11 Crystal structure of the protein-protein complex between F82W cytochrome c and cytochrome c peroxidase Deposited 2005-09-15 | Different construct Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
68–361（294 aa）
|
Mutation：F82W | ZNH PROTOPORPHYRIN IX CONTAINING ZN × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7；298 K；PEG 3350, NaCl, pH 7, VAPOR DIFFUSION, SITTING DROP, temperature 298K
|
Resolution 2.30 Å R-free 0.293 |
| 2B11 Crystal structure of the protein-protein complex between F82W cytochrome c and cytochrome c peroxidase Deposited 2005-09-15 | Different construct Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain C
68–361（294 aa）
|
Mutation：F82W | HEC HEME C × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7；298 K；PEG 3350, NaCl, pH 7, VAPOR DIFFUSION, SITTING DROP, temperature 298K
|
Resolution 2.30 Å R-free 0.293 |
| 2B12 Crystal structure of the protein-protein complex between F82Y cytochrome c and cytochrome c peroxidase Deposited 2005-09-15 | Different construct Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
68–361（294 aa）
|
Not recorded | ZNH PROTOPORPHYRIN IX CONTAINING ZN × 1 HEC HEME C × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7；298 K；PEG 3350, NaCl, BOG, pH 7, VAPOR DIFFUSION, SITTING DROP, temperature 298K
|
Resolution 3.02 Å R-free 0.268 |
| 2CCP X-RAY STRUCTURES OF RECOMBINANT YEAST CYTOCHROME C PEROXIDASE AND THREE HEME-CLEFT MUTANTS PREPARED BY SITE-DIRECTED MUTAGENESIS Deposited 1990-02-28 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
68–361（294 aa）
|
Mutation：D235N | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 2.20 Å |
| 2CEP ROLE OF MET-230 IN INTRAMOLECULAR ELECTRON TRANSFER BETWEEN THE OXYFERRYL HEME AND TRP 191 IN CYTOCHROME C PEROXIDASE COMPOUND II Deposited 1994-05-31 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
68–361（294 aa）
|
Not recorded | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 2.20 Å |
| 2CYP Crystal structure of yeast cytochrome C peroxidase refined at 1.7-angstroms resolution Deposited 1985-08-27 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
68–361（294 aa）
|
Not recorded | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 O OXYGEN ATOM × 1 | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 1.70 Å |
| 2EUN Cytochrome c peroxidase (CCP) in complex with 2,4-diaminopyrimidine Deposited 2005-10-29 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
|
Mutation：W191G | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 LG3 PYRIMIDINE-2,4-DIAMINE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 6；298 K；50 mM potassium phosphate
20% MPD, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.70 Å R-free 0.226 |
| 2EUO Cytochrome c peroxidase (CCP) in complex with 1-methyl-1-lambda-5-pyridin-3-yl-amine Deposited 2005-10-29 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
|
Mutation：W191G | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 LG5 1-METHYL-1,6-DIHYDROPYRIDIN-3-AMINE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 6；298 K；50 mM KPi
20% MPD, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.45 Å R-free 0.181 |
| 2EUP Cytochrome c peroxidase (CCP) in complex with 2-amino-5-picoline Deposited 2005-10-29 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
|
Mutation：W191G | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 LG4 5-METHYLPYRIDIN-2-AMINE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 6；298 K；50 mM KPi
20 % MDP, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.40 Å R-free 0.181 |
| 2EUQ Cytochrome c peroxydase (CCP) in complex with 3-thienylmethylamine Deposited 2005-10-29 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
|
Mutation：W191G | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 BVC 1-THIEN-3-YLMETHANAMINE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 6；298 K；50 mM KPi
20% MPD, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.30 Å R-free 0.166 |
| 2EUR Cytochrome c peroxidase (CCP) in complex with 4-pyridylcarbinol Deposited 2005-10-29 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
|
Mutation：W191G | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 PY7 PYRIDIN-4-YLMETHANOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 6；298 K；50 mM KPi
20% MPD, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.39 Å R-free 0.171 |
| 2EUS Cytochrome c peroxidase (CCP) in complex with benzylamine Deposited 2005-10-29 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
|
Mutation：W191G | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 ABN BENZYLAMINE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 6；298 K；50 mM KPi
20% MDP, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.55 Å R-free 0.178 |
| 2EUT Cytochrome c peroxidase (CCP) in complex with 2-amino-4-picoline Deposited 2005-10-29 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
|
Mutation：W191G | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 BVF 4-METHYLPYRIDIN-2-AMINE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 6；298 K；50 mM KPi
20% MPD, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.12 Å R-free 0.152 |
| 2EUU Cytochrome c peroxidase (CCP) in complex with 1H-imidazol-2-ylmethanol Deposited 2005-10-29 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
|
Mutation：W191G | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 BVG 1H-IMIDAZOL-2-YLMETHANOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 6；298 K；50 mM KPi
20% MPD, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.45 Å R-free 0.161 |
| 2GB8 Solution structure of the complex between yeast iso-1-cytochrome c and yeast cytochrome c peroxidase Deposited 2006-03-10 | Different construct Different mutation/modification Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
68–361（294 aa）
Fragment：cytochrome c peroxidase
|
Not recorded | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 HEC HEME C × 1 |
SOLUTION NMR
NMR measurement conditions
pH 6；301 K；Ionic strength (raw mmCIF value) 120mM；Pressure ambient
NMR sample composition
0.3-0.4mM Cc(Fe3+)-CcP(Fe3+), 1:1 complex; 20mM NaPi, 100mM NaCl pH 6.0 | 20mM NaPi, 100mM NaCl pH 6.0
|
Resolution not provided |
| 2IA8 Kinetic and Crystallographic Studies of a Redesigned Manganese-Binding Site in Cytochrome c Peroxidase Deposited 2006-09-07 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
|
Not recorded | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.6；277 K；1.0 M hexanediol in 0.1 M sodium acetate trihydrate, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 1.48 Å R-free 0.247 |
| 2ICV Kinetic and Crystallographic Studies of a Redesigned Manganese-Binding Site in Cytochrome c Peroxidase Deposited 2006-09-13 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
|
Not recorded | CO COBALT (II) ION × 1 HEM PROTOPORPHYRIN IX CONTAINING FE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 4.6；277 K；1.0 M hexanediol in 0.1 M sodium acetate trihydrate, VAPOR DIFFUSION, HANGING DROP, temperature 277K, pH 4.6
|
Resolution 1.60 Å R-free 0.257 |
| 2JTI Solution structure of the yeast iso-1-cytochrome c (T12A) : yeast cytochrome c peroxidase complex Deposited 2007-08-01 | Different construct Different mutation/modification Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
68–361（294 aa）
|
Mutation：N38C,N200C,S263C,T288C,C128A | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 HEC HEME C × 1 |
SOLUTION NMR
NMR measurement conditions
pH 6；303 K；Pressure ambient
NMR sample composition
0.3-0.4 mM [U-15N] CC, 0.3-0.4 mM CCP, 93% H2O/7% D2O | 93% H2O/7% D2O
|
Resolution not provided |
| 2N18 Dominant form of the low-affinity complex of yeast cytochrome c and cytochrome c peroxidase Deposited 2015-03-24 | Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric |
Chain A
68–361（294 aa）
Fragment：UNP residues 68-361
|
Mutation：C128A, V197C | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 HEC HEME C × 2 |
SOLUTION NMR
NMR measurement conditions
pH 6；298 K；Ionic strength (raw mmCIF value) 15；Pressure ambient
NMR sample composition
0.4 mM [U-2H; U-15N] CcP, 0.4 mM Cc, 0.4 mM Cc1, 20 mM sodium phosphate, 93% H2O/7% D2O | 93% H2O/7% D2O
|
Resolution not provided |
| 2PCB CRYSTAL STRUCTURE OF A COMPLEX BETWEEN ELECTRON TRANSFER PARTNERS, CYTOCHROME C PEROXIDASE AND CYTOCHROME C Deposited 1993-04-14 | Different construct Different mutation/modification Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
68–361（294 aa）
|
Not recorded | HEM PROTOPORPHYRIN IX CONTAINING FE × 2 | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 2.80 Å |
| 2PCB CRYSTAL STRUCTURE OF A COMPLEX BETWEEN ELECTRON TRANSFER PARTNERS, CYTOCHROME C PEROXIDASE AND CYTOCHROME C Deposited 1993-04-14 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain C
68–361（294 aa）
|
Not recorded | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 2.80 Å |
| 2PCC CRYSTAL STRUCTURE OF A COMPLEX BETWEEN ELECTRON TRANSFER PARTNERS, CYTOCHROME C PEROXIDASE AND CYTOCHROME C Deposited 1993-04-14 | Different construct Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
68–361（294 aa）
|
Not recorded | SO4 SULFATE ION × 1 HEM PROTOPORPHYRIN IX CONTAINING FE × 2 | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 2.30 Å |
| 2PCC CRYSTAL STRUCTURE OF A COMPLEX BETWEEN ELECTRON TRANSFER PARTNERS, CYTOCHROME C PEROXIDASE AND CYTOCHROME C Deposited 1993-04-14 | Different construct Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain C
68–361（294 aa）
|
Not recorded | SO4 SULFATE ION × 1 HEM PROTOPORPHYRIN IX CONTAINING FE × 2 | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 2.30 Å |
| 2V23 Structure of cytochrome c peroxidase mutant N184R Y36A Deposited 2007-05-31 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
68–361（294 aa）
|
Mutation：YES | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
MICRODIALYSIS；pH 6；MICRODIALYSIS INTO 50MM POTASSIUM PHOSPHATE, PH 6.0 CONTAINING 30% V/V MPD
|
Resolution 1.80 Å R-free 0.192 |
| 2V2E Structure of isoniazid (INH) bound to cytochrome c peroxidase mutant N184R Y36A Deposited 2007-06-05 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
Fragment：RESIDUES 71-361
|
Mutation：YES | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 ISZ 4-(DIAZENYLCARBONYL)PYRIDINE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
MICRODIALYSIS；pH 6；MICRODIALYSIS INTO 50MM POTASSIUM PHOSPHATE, PH 6.0 CONTAINING 30% V/V MPD. ISONIAZID WAS DISSOLVED INTO THE MOTHER LIQUOR (300MM) AND SOAKED INTO THE CRYSTAL.
|
Resolution 1.68 Å R-free 0.187 |
| 2X07 cytochrome c peroxidase: engineered ascorbate binding site Deposited 2009-12-07 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
69–361（293 aa）
Fragment：RESIDUES 69-361
|
Mutation：YES | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6；DIALYSIS AGAINST PHOSPHATE BUFFER 50 MM PH 6, MPD 30%
|
Resolution 1.86 Å R-free 0.247 |
| 2X08 cytochrome c peroxidase: ascorbate bound to the engineered ascorbate binding site Deposited 2009-12-07 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
69–361（293 aa）
Fragment：RESIDUES 69-361
|
Mutation：YES | ASC ASCORBIC ACID × 1 HEM PROTOPORPHYRIN IX CONTAINING FE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6；DIALYSIS AGAINST PHOSPHATE BUFFER 50 MM PH 6, MPD 30%
|
Resolution 2.01 Å |
| 2XIL The structure of cytochrome c peroxidase Compound I Deposited 2010-06-30 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
Fragment：RESIDUES 71-361
|
Not recorded | MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 3 MRD (4R)-2-METHYLPENTANE-2,4-DIOL × 3 HEM PROTOPORPHYRIN IX CONTAINING FE × 1 PO4 PHOSPHATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6.5；KPI 50 MM PH 6.5, MPD 30% (V/V)
|
Resolution 1.68 Å R-free 0.199 |
| 2XJ5 The structure of cytochrome c peroxidase Compound II Deposited 2010-07-02 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
Fragment：RESIDUES 71-361
|
Not recorded | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 6 PO4 PHOSPHATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6.5；KPI 50 MM PH 6.5, MPD 30% VOLUME
|
Resolution 1.69 Å R-free 0.197 |
| 2XJ8 The structure of ferrous cytochrome c peroxidase Deposited 2010-07-02 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
Fragment：RESIDUES 71-361
|
Not recorded | MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 2 HEM PROTOPORPHYRIN IX CONTAINING FE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6.5；pH 6.5
|
Resolution 1.69 Å R-free 0.210 |
| 2Y5A Cytochrome c peroxidase (CCP) W191G bound to 3-aminopyridine Deposited 2011-01-12 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
Fragment：RESIDUES 71-361
|
Mutation：YES | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 3AP 3-AMINOPYRIDINE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
CRYSTAL WAS SOAKED IN: 125 MM ACETIC ACID / BTP PH 4.5, 25% MPD.
|
Resolution 1.25 Å R-free 0.164 |
| 2YCG Structure of unreduced ferric cytochrome c peroxidase obtained by multicrystal method Deposited 2011-03-14 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
68–361（294 aa）
|
Not recorded | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 2 PO4 PHOSPHATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6.5；pH 6.5
|
Resolution 1.81 Å R-free 0.196 |
| 3CCP X-RAY STRUCTURES OF RECOMBINANT YEAST CYTOCHROME C PEROXIDASE AND THREE HEME-CLEFT MUTANTS PREPARED BY SITE-DIRECTED MUTAGENESIS Deposited 1990-02-28 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
68–361（294 aa）
|
Mutation：W191F | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 2.20 Å |
| 3CCX ALTERING SUBSTRATE SPECIFICITY AT THE HEME EDGE OF CYTOCHROME C PEROXIDASE Deposited 1995-03-17 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
|
Not recorded | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 2.30 Å |
| 3E2N Engineering ascorbate peroxidase activity into cytochrome c peroxidase Deposited 2008-08-05 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
68–96（29 aa）
Fragment：UNP residues 68-361, see remark 999
Chain A
110–361（252 aa）
Fragment：UNP residues 68-361, see remark 999
|
Mutation：N251R, W258F Mutation：N251R, W258F | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6；298 K；22% 2-methyl-2,4-pentanediol (MPD), 0.05M Tris-phosphate, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K
|
Resolution 1.30 Å |
| 3E2O Crystal structure of cytochrome c peroxidase, N184R mutant Deposited 2008-08-05 | Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
68–361（294 aa）
Fragment：UNP residues 68-361
|
Mutation：N184R | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6；298 K；22% 2-methyl-2,4-pentanediol (MPD), 0.05M Tris-phosphate, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K
|
Resolution 1.06 Å R-free 0.199 |
| 3EXB Crystal structure of Cytochrome C Peroxidase with a Proposed Electron Pathway Excised in a Complex with a Peptide Wire Deposited 2008-10-16 | Different construct Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
68–361（294 aa）
Fragment：sequence database residues 72-362
|
Mutation：P190G, W191G | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION；pH 6；282 K；200 mM KPi, 25% MPD, pH 6.0, VAPOR DIFFUSION, temperature 282K
|
Resolution 1.60 Å R-free 0.190 |
| 3M23 Crystallographic and Single Crystal Spectral Analysis of the Peroxidase Ferryl Intermediate Deposited 2010-03-06 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
Fragment：UNP residues 71-361
|
Mutation：N184R | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 PO4 PHOSPHATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6；277.2 K；10uL (350-400uM protein), 22% MPD, 50mM tris phoshate buffer pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 277.2K
|
Resolution 1.40 Å |
| 3M25 Crystallographic and Single Crystal Spectral Analysis of the Peroxidase Ferryl Intermediate Deposited 2010-03-06 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
Fragment：UNP resideus 71-361
|
Mutation：N184R | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 PO4 PHOSPHATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6；277.2 K；10uL (350-400uM protein), 22% MPD, 50mM tris phoshate buffer pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 277.2K
|
Resolution 1.40 Å |
| 3M26 Crystallographic and Single Crystal Spectral Analysis of the Peroxidase Ferryl Intermediate Deposited 2010-03-06 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
Fragment：UNP residues 71-361
|
Mutation：N184R | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 PO4 PHOSPHATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6；277.2 K；10uL (350-400uM protein), 22% MPD, 50mM tris phoshate buffer pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 277.2K
|
Resolution 1.40 Å |
| 3M27 Crystallographic and Single Crystal Spectral Analysis of the Peroxidase Ferryl Intermediate Deposited 2010-03-06 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
Fragment：UNP residues 71-361
|
Mutation：N184R | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 PO4 PHOSPHATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6；277.2 K；10uL (350-400uM protein), 22% MPD, 50mM tris phoshate buffer pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 277.2K
|
Resolution 1.40 Å |
| 3M28 Crystallographic and Single Crystal Spectral Analysis of the Peroxidase Ferryl Intermediate Deposited 2010-03-06 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
Fragment：UNP residues 71-361
|
Mutation：N184R | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 PO4 PHOSPHATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6；277.2 K；10uL (350-400uM protein), 22% MPD, 50mM tris phoshate buffer pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 277.2K
|
Resolution 1.40 Å |
| 3M29 Crystallographic and Single Crystal Spectral Analysis of the Peroxidase Ferryl Intermediate Deposited 2010-03-06 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
Fragment：UNP residues 71-361
|
Mutation：N184R | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 PO4 PHOSPHATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6；277.2 K；10uL (350-400uM protein), 22% MPD, 50mM tris phoshate buffer pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 277.2K
|
Resolution 1.40 Å |
| 3M2A Crystallographic and Single Crystal Spectral Analysis of the Peroxidase Ferryl Intermediate Deposited 2010-03-06 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
Fragment：UNP residues 71-361
|
Mutation：N184R | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 PO4 PHOSPHATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6；277.2 K；10uL (350-400uM protein), 22% MPD, 50mM tris phoshate buffer pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 277.2K
|
Resolution 1.40 Å |
| 3M2B Crystallographic and Single Crystal Spectral Analysis of the Peroxidase Ferryl Intermediate Deposited 2010-03-06 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
Fragment：UNP residues 71-361
|
Mutation：N184R | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 PO4 PHOSPHATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6；277.2 K；10uL (350-400uM protein), 22% MPD, 50mM tris phoshate buffer pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 277.2K
|
Resolution 1.40 Å |
| 3M2C Crystallographic and Single Crystal Spectral Analysis of the Peroxidase Ferryl Intermediate Deposited 2010-03-06 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
Fragment：UNP residues 71-361
|
Mutation：N184R | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 PO4 PHOSPHATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6；277.2 K；10uL (350-400uM protein), 22% MPD, 50mM tris phoshate buffer pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 277.2K
|
Resolution 1.40 Å |
| 3M2D Crystallographic and Single Crystal Spectral Analysis of the Peroxidase Ferryl Intermediate Deposited 2010-03-06 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
Fragment：UNP residues 71-361
|
Mutation：N184R | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 PO4 PHOSPHATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6；277.2 K；10uL (350-400uM protein), 22% MPD, 50mM tris phoshate buffer pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 277.2K
|
Resolution 1.40 Å |
| 3M2E Crystallographic and Single Crystal Spectral Analysis of the Peroxidase Ferryl Intermediate Deposited 2010-03-07 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
Fragment：UNP residues 71-361
|
Mutation：N184R | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 PO4 PHOSPHATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6；277.2 K；10uL (350-400uM protein), 22% MPD, 50mM tris phoshate buffer pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 277.2K
|
Resolution 1.40 Å |
| 3M2F Crystallographic and Single Crystal Spectral Analysis of the Peroxidase Ferryl Intermediate Deposited 2010-03-07 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
Fragment：UNP residues 71-361
|
Mutation：N184R | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 PO4 PHOSPHATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6；277.2 K；10uL (350-400uM protein), 22% MPD, 50mM tris phoshate buffer pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 277.2K
|
Resolution 1.40 Å |
| 3M2G Crystallographic and Single Crystal Spectral Analysis of the Peroxidase Ferryl Intermediate Deposited 2010-03-07 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
Fragment：UNP residues 71-361
|
Mutation：N184R | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 PO4 PHOSPHATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6；277.2 K；10uL (350-400uM protein), 22% MPD, 50mM tris phoshate buffer pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 277.2K
|
Resolution 1.40 Å |
| 3M2H Crystallographic and Single Crystal Spectral Analysis of the Peroxidase Ferryl Intermediate Deposited 2010-03-07 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
Fragment：UNP residues 71-361
|
Mutation：N184R | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 PO4 PHOSPHATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6；277.2 K；10uL (350-400uM protein), 22% MPD, 50mM tris phoshate buffer pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 277.2K
|
Resolution 1.40 Å R-free 0.155 |
| 3M2I Crystallographic and Single Crystal Spectral Analysis of the Peroxidase Ferryl Intermediate Deposited 2010-03-07 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
Fragment：UNP residues 71-361
|
Mutation：N184R | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 PO4 PHOSPHATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 6；277.2 K；10uL (350-400uM protein), 22% MPD, 50mM tris phoshate buffer pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 277.2K
|
Resolution 1.40 Å |
| 3R98 Joint Neutron and X-ray structure of Cytochrome c peroxidase Deposited 2011-03-25 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
69–361（293 aa）
|
Not recorded | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 |
Experimental method not declared
X-ray crystallization conditions
MICRODIALYSIS；pH 6；298 K；50mM potassium phosphate, 30% MPD, pH 6.0(in D2O), MICRODIALYSIS, temperature 298K
|
Resolution not provided |
| 3R99 Joint Neutron and X-ray structure of Cytochrome c peroxidase Deposited 2011-03-25 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
69–361（293 aa）
|
Not recorded | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 |
Experimental method not declared
X-ray crystallization conditions
MICRODIALYSIS；pH 6；298 K；50mM potassium phosphate, 30% MPD, pH 6.0(in D2O), MICRODIALYSIS, temperature 298K
|
Resolution not provided |
| 4A6Z Cytochrome c peroxidase with bound guaiacol Deposited 2011-11-10 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
68–361（294 aa）
|
Mutation：YES | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 JZ3 Guaiacol × 2 | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 1.61 Å R-free 0.210 |
| 4A71 cytochrome c peroxidase in complex with phenol Deposited 2011-11-10 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
68–361（294 aa）
|
Mutation：YES | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 IPH PHENOL × 2 | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 1.61 Å R-free 0.186 |
| 4A78 cytochrome c peroxidase M119W in complex with guiacol Deposited 2011-11-11 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
68–361（294 aa）
|
Mutation：YES | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 JZ3 Guaiacol × 1 | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 2.01 Å R-free 0.232 |
| 4A7M cytochrome c peroxidase S81W mutant Deposited 2011-11-14 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
68–361（294 aa）
|
Mutation：YES | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 MRD (4R)-2-METHYLPENTANE-2,4-DIOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
MICRODIALYSIS；pH 6；MICRODIALYSIS AGAINST 30% MPD., pH 6.0
|
Resolution 1.71 Å R-free 0.209 |
| 4CCP X-RAY STRUCTURES OF RECOMBINANT YEAST CYTOCHROME C PEROXIDASE AND THREE HEME-CLEFT MUTANTS PREPARED BY SITE-DIRECTED MUTAGENESIS Deposited 1990-02-28 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
68–361（294 aa）
|
Mutation：W51F | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 2.20 Å |
| 4CCX ALTERING SUBSTRATE SPECIFICITY AT THE HEME EDGE OF CYTOCHROME C PEROXIDASE Deposited 1995-03-17 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
|
Not recorded | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 1.90 Å |
| 4JB4 Expression, Purification, Characterization, and Solution NMR Study of Highly Deuterated Yeast Cytochrome c Peroxidase with Enhanced Solubility Deposited 2013-02-19 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
68–361（294 aa）
Fragment：cytochrome-c peroxidase, UNP residues 68-361
|
Mutation：T1M, T2K, P3T | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 F FLUORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5；298 K；0.2M NH4Cl, 0.1 M CH3COONa pH5.0 and 20% w/v PEG 6000, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.39 Å R-free 0.279 |
| 4JB4 Expression, Purification, Characterization, and Solution NMR Study of Highly Deuterated Yeast Cytochrome c Peroxidase with Enhanced Solubility Deposited 2013-02-19 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain C
68–361（294 aa）
Fragment：cytochrome-c peroxidase, UNP residues 68-361
|
Mutation：T1M, T2K, P3T | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 F FLUORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5；298 K；0.2M NH4Cl, 0.1 M CH3COONa pH5.0 and 20% w/v PEG 6000, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.39 Å R-free 0.279 |
| 4NFG K13R mutant of horse cytochrome c and yeast cytochrome c peroxidase complex Deposited 2013-10-31 | Different construct Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
71–361（291 aa）
|
Not recorded | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 UNX UNKNOWN LIGAND × 1 HEC HEME C × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7；298 K；15% PEG 3350, 150 mM NaCl, 0.5 mM 1:1 ratio of horse cytochrome c and yeast cytochrome c peroxidase, pH 7, VAPOR DIFFUSION, SITTING DROP, temperature 298K
|
Resolution 2.11 Å R-free 0.236 |
| 4XV4 CcP gateless cavity Deposited 2015-01-26 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
Fragment：unp residues 71-361
|
Mutation：P190G, W191G | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 25T 2-AMINO-5-METHYLTHIAZOLE × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 6；283 K；Compound soaked into crystal grown in equal volume of 500mM MES buffer and 25% MPD
|
Resolution 1.69 Å R-free 0.150 |
| 4XV5 CcP gateless cavity Deposited 2015-01-26 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
Fragment：unp residues 71-362
|
Mutation：P190G, W191G | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 BZI BENZIMIDAZOLE × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 6；283 K；Compound soaked into crystal grown in equal volume of 500mM MES buffer and 25% MPD
|
Resolution 1.65 Å R-free 0.150 |
| 4XV6 CcP gateless cavity Deposited 2015-01-26 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
|
Mutation：P190G, W191G | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 6；283 K；CRYSTAL GROWN IN EQUAL VOLUME OF 500mM MES BUFFER AND 25% MPD
|
Resolution 1.55 Å R-free 0.136 |
| 4XV7 CcP gateless cavity Deposited 2015-01-26 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
Fragment：RESIDUES 72-362, NUMBERED 4-292
|
Mutation：P190G, W191G | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 1LQ quinazolin-4-amine × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 6；283 K；Compound soaked into crystal grown in equal volume of 500mM MES buffer and 25% MPD
|
Resolution 1.62 Å R-free 0.148 |
| 4XV8 CcP gateless cavity Deposited 2015-01-26 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
Fragment：unp residues 71-361
|
Mutation：P190G, W191G | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 BEN BENZAMIDINE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 6；283 K；Compound soaked into crystal grown in equal volume of 500mM MES buffer and 25% MPD
|
Resolution 1.57 Å R-free 0.140 |
| 4XVA Crystal structure of wild type cytochrome c peroxidase Deposited 2015-01-26 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
69–361（293 aa）
Fragment：unp residues 69-361
|
Not recorded | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 BZI BENZIMIDAZOLE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 6；283 K；Compound soaked into crystal grown in equal volume of 500mM MES buffer and 25% MPD
|
Resolution 2.66 Å R-free 0.276 |
| 4XVA Crystal structure of wild type cytochrome c peroxidase Deposited 2015-01-26 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain C
69–361（293 aa）
Fragment：unp residues 69-361
|
Not recorded | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 BZI BENZIMIDAZOLE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 6；283 K；Compound soaked into crystal grown in equal volume of 500mM MES buffer and 25% MPD
|
Resolution 2.66 Å R-free 0.276 |
| 4XVA Crystal structure of wild type cytochrome c peroxidase Deposited 2015-01-26 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 3 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain E
69–361（293 aa）
Fragment：unp residues 69-361
|
Not recorded | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 BZI BENZIMIDAZOLE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 6；283 K；Compound soaked into crystal grown in equal volume of 500mM MES buffer and 25% MPD
|
Resolution 2.66 Å R-free 0.276 |
| 4XVA Crystal structure of wild type cytochrome c peroxidase Deposited 2015-01-26 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 4 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain G
69–361（293 aa）
Fragment：unp residues 69-361
|
Not recorded | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 6；283 K；Compound soaked into crystal grown in equal volume of 500mM MES buffer and 25% MPD
|
Resolution 2.66 Å R-free 0.276 |
| 5CCP HISTIDINE 52 IS A CRITICAL RESIDUE FOR RAPID FORMATION OF CYTOCHROME C PEROXIDASE COMPOUND I Deposited 1993-06-07 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
68–361（294 aa）
|
Mutation：H52L | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 2.20 Å |
| 5CIB Complex of yeast cytochrome c peroxidase (W191G) bound to 2,4-dimethylaniline with iso-1 cytochrome c Deposited 2015-07-11 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 4 PDB declaration: tetrameric |
Chain A
68–361（294 aa）
Fragment：cytochrome c peroxidase
Chain C
68–361（294 aa）
Fragment：cytochrome c peroxidase
|
Mutation：W191G Mutation：W191G | HEC HEME C × 4 51S 2,4-dimethylaniline × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；298 K；PEG 3350 15-15%, 100 mM NaAcetate, 175 mM NaCl
|
Resolution 3.01 Å R-free 0.304 |
| 5CIC Complex of yeast cytochrome c peroxidase (W191G) bound to 3-aminobenzotrifluoride with iso-1 cytochrome c Deposited 2015-07-11 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 4 PDB declaration: tetrameric |
Chain A
68–361（294 aa）
Chain C
68–361（294 aa）
|
Mutation：W191G Mutation：W191G | HEC HEME C × 4 51R 3-(trifluoromethyl)aniline × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；289 K；PEG 3350 15-15%, 100 mM NaAcetate, 175 mM NaCl
|
Resolution 2.10 Å R-free 0.228 |
| 5CID Complex of yeast cytochrome c peroxidase (W191G) bound to o-toluidine with iso-1 cytochrome c Deposited 2015-07-12 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 4 PDB declaration: tetrameric |
Chain A
68–361（294 aa）
Fragment：W191G
Chain C
68–361（294 aa）
Fragment：W191G
|
Not recorded | HEC HEME C × 4 51V 2-methylaniline × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；298 K；PEG 3350 15-15%, 100 mM NaAcetate, 175 mM NaCl
|
Resolution 2.76 Å R-free 0.268 |
| 5CIE Complex of yeast cytochrome c peroxidase (W191G) bound to aniline with iso-1 cytochrome c Deposited 2015-07-12 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 4 PDB declaration: tetrameric |
Chain A
68–361（294 aa）
Chain C
68–361（294 aa）
|
Mutation：W191G Mutation：W191G | HEC HEME C × 4 ANL ANILINE × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；298 K；PEG 3350 15-15%, 100 mM NaAcetate, 175 mM NaCl
|
Resolution 2.60 Å R-free 0.294 |
| 5CIF Complex of yeast cytochrome c peroxidase (W191F) with iso-1 cytochrome c Deposited 2015-07-12 | Different ligand/ion Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
68–361（294 aa）
Fragment：UNP residues 68-361
|
Mutation：W191F | HEC HEME C × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；298 K；PEG 3350 15-15%, 100 mM NaAcetate, 175 mM NaCl
|
Resolution 2.01 Å R-free 0.268 |
| 5CIF Complex of yeast cytochrome c peroxidase (W191F) with iso-1 cytochrome c Deposited 2015-07-12 | Different ligand/ion Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain C
68–361（294 aa）
Fragment：UNP residues 68-361
|
Mutation：W191F | HEC HEME C × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；298 K；PEG 3350 15-15%, 100 mM NaAcetate, 175 mM NaCl
|
Resolution 2.01 Å R-free 0.268 |
| 5CIG Complex of yeast cytochrome c peroxidase (W191G) with iso-1 cytochrome c Deposited 2015-07-12 | Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
68–361（294 aa）
Fragment：UNP residues 68-361
|
Mutation：W191G | HEC HEME C × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；289 K；PEG 3350 15-15%, 100 mM NaAcetate, 175 mM NaCl
|
Resolution 2.06 Å R-free 0.298 |
| 5CIG Complex of yeast cytochrome c peroxidase (W191G) with iso-1 cytochrome c Deposited 2015-07-12 | Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain C
68–361（294 aa）
Fragment：UNP residues 68-361
|
Mutation：W191G | HEC HEME C × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；289 K；PEG 3350 15-15%, 100 mM NaAcetate, 175 mM NaCl
|
Resolution 2.06 Å R-free 0.298 |
| 5CIH Complex of yeast cytochrome c peroxidase (W191Y) with iso-1 cytochrome c Deposited 2015-07-12 | Different mutation/modification Different ligand/ion Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
68–361（294 aa）
Fragment：UNP residues 68-361
|
Mutation：T53I, D152G, W191Y | HEC HEME C × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；298 K；PEG 3350 15-15%, 100 mM NaAcetate, 175 mM NaCl
|
Resolution 2.60 Å R-free 0.310 |
| 5CIH Complex of yeast cytochrome c peroxidase (W191Y) with iso-1 cytochrome c Deposited 2015-07-12 | Different mutation/modification Different ligand/ion Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain C
68–361（294 aa）
Fragment：UNP residues 68-361
|
Mutation：T53I, D152G, W191Y | HEC HEME C × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；298 K；PEG 3350 15-15%, 100 mM NaAcetate, 175 mM NaCl
|
Resolution 2.60 Å R-free 0.310 |
| 5D6M Mn(II)-loaded MnCcP.1 Deposited 2015-08-12 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
Fragment：UNP residues 71-361
|
Not recorded | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 MN MANGANESE (II) ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；277 K；0.2 M Sodium iodide, 20% w/v Polyethylene glycol 3,350
|
Resolution 1.65 Å R-free 0.197 |
| 5EJT Thermally annealed ferryl Cytochrome C Peroxidase crystal structure Deposited 2015-11-02 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
68–361（294 aa）
|
Mutation：R184N | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 PO4 PHOSPHATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 6；277 K；10UL (350-400UM PROTEIN), 22% MPD,
50MM TRIS PHOSHATE BUFFER PH 6.0, VAPOR DIFFUSION, SITTING DROP,
TEMPERATURE 277.2K
|
Resolution 1.55 Å R-free 0.177 |
| 5EJX X-ray Free Electron Laser Structure of Cytochrome C Peroxidase Deposited 2015-11-02 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
68–361（294 aa）
|
Mutation：N184R | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 PO4 PHOSPHATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 6；277 K；10UL (350-400UM PROTEIN), 22% MPD,
50MM TRIS PHOSHATE BUFFER PH 6.0, VAPOR DIFFUSION, SITTING DROP,
TEMPERATURE 277.2K
|
Resolution 1.50 Å R-free 0.261 |
| 6CCP EFFECT OF ARGININE-48 REPLACEMENT ON THE REACTION BETWEEN CYTOCHROME C PEROXIDASE AND HYDROGEN PEROXIDE Deposited 1993-06-07 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
68–361（294 aa）
|
Mutation：R48K | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 2.20 Å |
| 6H08 The crystal structure of engineered cytochrome c peroxidase from Saccharomyces cerevisiae with a His175Me-His proximal ligand substitution Deposited 2018-07-06 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 CO COBALT (II) ION × 1 MN MANGANESE (II) ION × 1 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 6；277 K；5 mM cobalt(II) chloride hexahydrate, 5 mM cadmium chloride hemi(pentahydrate), 5 mM magnesium chloride hexahydrate, 5 mM nickel(II) chloride hexahydrate, 0.1 M HEPES pH 7.5 and 12% w/v PEG 3350
|
Resolution 1.90 Å R-free 0.205 |
| 6H08 The crystal structure of engineered cytochrome c peroxidase from Saccharomyces cerevisiae with a His175Me-His proximal ligand substitution Deposited 2018-07-06 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain B
71–361（291 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 CO COBALT (II) ION × 2 NA SODIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 6；277 K；5 mM cobalt(II) chloride hexahydrate, 5 mM cadmium chloride hemi(pentahydrate), 5 mM magnesium chloride hexahydrate, 5 mM nickel(II) chloride hexahydrate, 0.1 M HEPES pH 7.5 and 12% w/v PEG 3350
|
Resolution 1.90 Å R-free 0.205 |
| 6H08 The crystal structure of engineered cytochrome c peroxidase from Saccharomyces cerevisiae with a His175Me-His proximal ligand substitution Deposited 2018-07-06 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 3 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain C
71–361（291 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 CO COBALT (II) ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 6；277 K；5 mM cobalt(II) chloride hexahydrate, 5 mM cadmium chloride hemi(pentahydrate), 5 mM magnesium chloride hexahydrate, 5 mM nickel(II) chloride hexahydrate, 0.1 M HEPES pH 7.5 and 12% w/v PEG 3350
|
Resolution 1.90 Å R-free 0.205 |
| 6P41 Yeast cytochrome c peroxidase (W191Y:L232E) in complex with iso-1 cytochrome c Deposited 2019-05-25 | Different construct Different mutation/modification Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
68–361（294 aa）
|
Mutation：W191Y, L232E | HEM PROTOPORPHYRIN IX CONTAINING FE × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；298 K；100 mM sodium acetate,175 mM NaCl, 5 mM n-octyl-B-D-glucoside, polyethylene glycol 3350 18%-20%
|
Resolution 2.90 Å R-free 0.273 |
| 6P41 Yeast cytochrome c peroxidase (W191Y:L232E) in complex with iso-1 cytochrome c Deposited 2019-05-25 | Different construct Different mutation/modification Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain C
68–361（294 aa）
|
Mutation：W191Y, L232E | HEM PROTOPORPHYRIN IX CONTAINING FE × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；298 K；100 mM sodium acetate,175 mM NaCl, 5 mM n-octyl-B-D-glucoside, polyethylene glycol 3350 18%-20%
|
Resolution 2.90 Å R-free 0.273 |
| 6P42 Yeast cytochrome c peroxidase (W191Y:L232H) in complex with iso-1 cytochrome c Deposited 2019-05-25 | Different construct Different mutation/modification Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain A
68–361（294 aa）
|
Mutation：W191Y, L232H | HEM PROTOPORPHYRIN IX CONTAINING FE × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；298 K；100 mM sodium acetate,175 mM NaCl, 5 mM n-octyl-B-D-glucoside, polyethylene glycol 3350 18%-20%, L-proline
|
Resolution 2.90 Å R-free 0.271 |
| 6P42 Yeast cytochrome c peroxidase (W191Y:L232H) in complex with iso-1 cytochrome c Deposited 2019-05-25 | Different construct Different mutation/modification Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric |
Chain C
68–361（294 aa）
|
Mutation：W191Y, L232H | HEM PROTOPORPHYRIN IX CONTAINING FE × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；298 K；100 mM sodium acetate,175 mM NaCl, 5 mM n-octyl-B-D-glucoside, polyethylene glycol 3350 18%-20%, L-proline
|
Resolution 2.90 Å R-free 0.271 |
| 6P43 Yeast cytochrome c peroxidase in complex with iso-1 cytochrome c (Y48K) Deposited 2019-05-25 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric |
Chain A
68–361（294 aa）
Chain C
68–361（294 aa）
|
Not recorded | HEM PROTOPORPHYRIN IX CONTAINING FE × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；298 K；100 mM sodium acetate, 175 mM NaCl, 5 mM n-octyl-B-D-glucoside, polyethylene glycol 3350 14%-20%
|
Resolution 1.91 Å R-free 0.228 |
| 6Y1T The crystal structure of engineered cytochrome c peroxidase from Saccharomyces cerevisiae with a Trp51 to S-Trp51 modification Deposited 2020-02-13 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
|
Mutation：Trp51S-Trp Non-standard monomer：Yes (specific site not provided by mmCIF) | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 EDO 1,2-ETHANEDIOL × 1 1PE PENTAETHYLENE GLYCOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；277.15 K；60 mM magnesium chloride hexahydrate, 60 mM calcuim chloride dihydrate, 0.1 M imidazole, 0.1 M MES pH 6.5, 20% v/v ethylene glycol and 10% w/v PEG 8000
|
Resolution 1.50 Å R-free 0.177 |
| 6Y2Y The crystal structure of engineered cytochrome c peroxidase from Saccharomyces cerevisiae with Trp51 to S-Trp51 and Trp191Phe modifications Deposited 2020-02-17 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
71–361（291 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 EDO 1,2-ETHANEDIOL × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；277.15 K；0.1 M HEPES pH 7.5 and 10% w/v PEG 8000
|
Resolution 1.70 Å R-free 0.180 |
| 7CCP EFFECT OF ARGININE-48 REPLACEMENT ON THE REACTION BETWEEN CYTOCHROME C PEROXIDASE AND HYDROGEN PEROXIDE Deposited 1993-06-07 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
68–361（294 aa）
|
Mutation：R48L | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 2.20 Å |
| 9C8L High-resolution structure of cytochrome c peroxidase from yeast at ambient temperature and ambient pressure Deposited 2024-06-12 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
68–361（294 aa）
|
Not recorded | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；293 K；10-25 % polyethylene glycol 550 (MME) and 100 mM 2-(N-morpholino)ethanesulfonic acid (pH 6.1-7.1)
|
Resolution 1.54 Å R-free 0.180 |
| 9C8M High-resolution structure of cytochrome c peroxidase from yeast under cryogenic conditions and ambient pressure Deposited 2024-06-12 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
68–361（294 aa）
|
Not recorded | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；293 K；10-25 % polyethylene glycol 550 (MME) and 100 mM 2-(N-morpholino)ethanesulfonic acid (pH 6.1-7.1)
|
Resolution 1.78 Å R-free 0.213 |
| 9C8O High-resolution structure of cytochrome c peroxidase from yeast at ambient temperature and 1.5 kbar Deposited 2024-06-12 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
68–361（294 aa）
|
Not recorded | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 PER PEROXIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；293 K；10-25 % polyethylene glycol 550 (MME) and 100 mM 2-(N-morpholino)ethanesulfonic acid (pH 6.1-7.1)
|
Resolution 2.31 Å R-free 0.250 |
| 9C8P High-resolution structure of cytochrome c peroxidase from yeast at ambient temperature and 3.0 kbar Deposited 2024-06-12 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
68–361（294 aa）
|
Not recorded | HEM PROTOPORPHYRIN IX CONTAINING FE × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；293 K；10-25 % polyethylene glycol 550 (MME) and 100 mM 2-(N-morpholino)ethanesulfonic acid (pH 6.1-7.1)
|
Resolution 2.31 Å R-free 0.273 |
175 other PDB entries and 192 assemblies. Open the comparison page and filter oligomeric states
View Construct and Data Evidence
| UniProt name | CCPR_YEAST |
| Isoform | — |
| PDB entities | 1 |
| Chains and sequence ranges | Author chain A； PDBConstruct 1–294； UniProt 68–361 Author chain C； PDBConstruct 1–294； UniProt 68–361 |
