4qrm

crystal structure of a binary complex of FliM-FliG middle domains from T.maritima

Method: X-RAY DIFFRACTION Dmax: 193.8 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

Flagellar motor switch protein FliM

Thermotoga maritima

UniProt Q9WZE6

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain A; UniProt 46–228 Fragment:Middle domain, Chain A, C, E, G, I, K, M, O, Q, S, U Flagellar motor switch protein FliG × 1 (Q9WY63) X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 6.5;298 K;0.1 M imidazole, pH 6.5, 1.2 M sodium acetate trihydrate, VAPOR DIFFUSION, HANGING DROP, temperature 298K Resolution 4.32 Å R-free 0.291
10 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain M; UniProt 46–228 Fragment:Middle domain, Chain A, C, E, G, I, K, M, O, Q, S, U Flagellar motor switch protein FliG × 1 (Q9WY63) X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 6.5;298 K;0.1 M imidazole, pH 6.5, 1.2 M sodium acetate trihydrate, VAPOR DIFFUSION, HANGING DROP, temperature 298K Resolution 4.32 Å R-free 0.291
11 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain O; UniProt 46–228 Fragment:Middle domain, Chain A, C, E, G, I, K, M, O, Q, S, U Flagellar motor switch protein FliG × 1 (Q9WY63) X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 6.5;298 K;0.1 M imidazole, pH 6.5, 1.2 M sodium acetate trihydrate, VAPOR DIFFUSION, HANGING DROP, temperature 298K Resolution 4.32 Å R-free 0.291
2 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain C; UniProt 46–228 Fragment:Middle domain, Chain A, C, E, G, I, K, M, O, Q, S, U Flagellar motor switch protein FliG × 1 (Q9WY63) X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 6.5;298 K;0.1 M imidazole, pH 6.5, 1.2 M sodium acetate trihydrate, VAPOR DIFFUSION, HANGING DROP, temperature 298K Resolution 4.32 Å R-free 0.291
3 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain E; UniProt 46–228 Fragment:Middle domain, Chain A, C, E, G, I, K, M, O, Q, S, U Flagellar motor switch protein FliG × 1 (Q9WY63) X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 6.5;298 K;0.1 M imidazole, pH 6.5, 1.2 M sodium acetate trihydrate, VAPOR DIFFUSION, HANGING DROP, temperature 298K Resolution 4.32 Å R-free 0.291
4 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain G; UniProt 46–228 Fragment:Middle domain, Chain A, C, E, G, I, K, M, O, Q, S, U Flagellar motor switch protein FliG × 1 (Q9WY63) X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 6.5;298 K;0.1 M imidazole, pH 6.5, 1.2 M sodium acetate trihydrate, VAPOR DIFFUSION, HANGING DROP, temperature 298K Resolution 4.32 Å R-free 0.291
5 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain I; UniProt 46–228 Fragment:Middle domain, Chain A, C, E, G, I, K, M, O, Q, S, U Flagellar motor switch protein FliG × 1 (Q9WY63) X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 6.5;298 K;0.1 M imidazole, pH 6.5, 1.2 M sodium acetate trihydrate, VAPOR DIFFUSION, HANGING DROP, temperature 298K Resolution 4.32 Å R-free 0.291
6 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain Q; UniProt 46–228 Fragment:Middle domain, Chain A, C, E, G, I, K, M, O, Q, S, U Flagellar motor switch protein FliG × 1 (Q9WY63) X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 6.5;298 K;0.1 M imidazole, pH 6.5, 1.2 M sodium acetate trihydrate, VAPOR DIFFUSION, HANGING DROP, temperature 298K Resolution 4.32 Å R-free 0.291
7 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain S; UniProt 46–228 Fragment:Middle domain, Chain A, C, E, G, I, K, M, O, Q, S, U Flagellar motor switch protein FliG × 1 (Q9WY63) X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 6.5;298 K;0.1 M imidazole, pH 6.5, 1.2 M sodium acetate trihydrate, VAPOR DIFFUSION, HANGING DROP, temperature 298K Resolution 4.32 Å R-free 0.291
8 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain U; UniProt 46–228 Fragment:Middle domain, Chain A, C, E, G, I, K, M, O, Q, S, U Flagellar motor switch protein FliG × 1 (Q9WY63) X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 6.5;298 K;0.1 M imidazole, pH 6.5, 1.2 M sodium acetate trihydrate, VAPOR DIFFUSION, HANGING DROP, temperature 298K Resolution 4.32 Å R-free 0.291
9 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain K; UniProt 46–228 Fragment:Middle domain, Chain A, C, E, G, I, K, M, O, Q, S, U Flagellar motor switch protein FliG × 1 (Q9WY63) X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 6.5;298 K;0.1 M imidazole, pH 6.5, 1.2 M sodium acetate trihydrate, VAPOR DIFFUSION, HANGING DROP, temperature 298K Resolution 4.32 Å R-free 0.291

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

4 other PDB entries and 5 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name FLIM_THEMA
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–183; UniProt 46–228 Author chain C; PDBConstruct 1–183; UniProt 46–228 Author chain E; PDBConstruct 1–183; UniProt 46–228 Author chain G; PDBConstruct 1–183; UniProt 46–228 Author chain I; PDBConstruct 1–183; UniProt 46–228 Author chain K; PDBConstruct 1–183; UniProt 46–228 Author chain M; PDBConstruct 1–183; UniProt 46–228 Author chain O; PDBConstruct 1–183; UniProt 46–228 Author chain Q; PDBConstruct 1–183; UniProt 46–228 Author chain S; PDBConstruct 1–183; UniProt 46–228 Author chain U; PDBConstruct 1–183; UniProt 46–228

Flagellar motor switch protein FliG

Thermotoga maritima

UniProt Q9WY63

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain B; UniProt 117–187 Fragment:Middle domain, Chain B, D, F, H, J, L, N, P, R, T, V Flagellar motor switch protein FliM × 1 (Q9WZE6) X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 6.5;298 K;0.1 M imidazole, pH 6.5, 1.2 M sodium acetate trihydrate, VAPOR DIFFUSION, HANGING DROP, temperature 298K Resolution 4.32 Å R-free 0.291
10 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain N; UniProt 117–187 Fragment:Middle domain, Chain B, D, F, H, J, L, N, P, R, T, V Flagellar motor switch protein FliM × 1 (Q9WZE6) X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 6.5;298 K;0.1 M imidazole, pH 6.5, 1.2 M sodium acetate trihydrate, VAPOR DIFFUSION, HANGING DROP, temperature 298K Resolution 4.32 Å R-free 0.291
11 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain P; UniProt 117–187 Fragment:Middle domain, Chain B, D, F, H, J, L, N, P, R, T, V Flagellar motor switch protein FliM × 1 (Q9WZE6) X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 6.5;298 K;0.1 M imidazole, pH 6.5, 1.2 M sodium acetate trihydrate, VAPOR DIFFUSION, HANGING DROP, temperature 298K Resolution 4.32 Å R-free 0.291
2 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain D; UniProt 117–187 Fragment:Middle domain, Chain B, D, F, H, J, L, N, P, R, T, V Flagellar motor switch protein FliM × 1 (Q9WZE6) X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 6.5;298 K;0.1 M imidazole, pH 6.5, 1.2 M sodium acetate trihydrate, VAPOR DIFFUSION, HANGING DROP, temperature 298K Resolution 4.32 Å R-free 0.291
3 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain F; UniProt 117–187 Fragment:Middle domain, Chain B, D, F, H, J, L, N, P, R, T, V Flagellar motor switch protein FliM × 1 (Q9WZE6) X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 6.5;298 K;0.1 M imidazole, pH 6.5, 1.2 M sodium acetate trihydrate, VAPOR DIFFUSION, HANGING DROP, temperature 298K Resolution 4.32 Å R-free 0.291
4 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain H; UniProt 117–187 Fragment:Middle domain, Chain B, D, F, H, J, L, N, P, R, T, V Flagellar motor switch protein FliM × 1 (Q9WZE6) X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 6.5;298 K;0.1 M imidazole, pH 6.5, 1.2 M sodium acetate trihydrate, VAPOR DIFFUSION, HANGING DROP, temperature 298K Resolution 4.32 Å R-free 0.291
5 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain J; UniProt 117–187 Fragment:Middle domain, Chain B, D, F, H, J, L, N, P, R, T, V Flagellar motor switch protein FliM × 1 (Q9WZE6) X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 6.5;298 K;0.1 M imidazole, pH 6.5, 1.2 M sodium acetate trihydrate, VAPOR DIFFUSION, HANGING DROP, temperature 298K Resolution 4.32 Å R-free 0.291
6 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain R; UniProt 117–187 Fragment:Middle domain, Chain B, D, F, H, J, L, N, P, R, T, V Flagellar motor switch protein FliM × 1 (Q9WZE6) X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 6.5;298 K;0.1 M imidazole, pH 6.5, 1.2 M sodium acetate trihydrate, VAPOR DIFFUSION, HANGING DROP, temperature 298K Resolution 4.32 Å R-free 0.291
7 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain T; UniProt 117–187 Fragment:Middle domain, Chain B, D, F, H, J, L, N, P, R, T, V Flagellar motor switch protein FliM × 1 (Q9WZE6) X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 6.5;298 K;0.1 M imidazole, pH 6.5, 1.2 M sodium acetate trihydrate, VAPOR DIFFUSION, HANGING DROP, temperature 298K Resolution 4.32 Å R-free 0.291
8 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain V; UniProt 117–187 Fragment:Middle domain, Chain B, D, F, H, J, L, N, P, R, T, V Flagellar motor switch protein FliM × 1 (Q9WZE6) X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 6.5;298 K;0.1 M imidazole, pH 6.5, 1.2 M sodium acetate trihydrate, VAPOR DIFFUSION, HANGING DROP, temperature 298K Resolution 4.32 Å R-free 0.291
9 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain L; UniProt 117–187 Fragment:Middle domain, Chain B, D, F, H, J, L, N, P, R, T, V Flagellar motor switch protein FliM × 1 (Q9WZE6) X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 6.5;298 K;0.1 M imidazole, pH 6.5, 1.2 M sodium acetate trihydrate, VAPOR DIFFUSION, HANGING DROP, temperature 298K Resolution 4.32 Å R-free 0.291

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

6 other PDB entries and 11 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name FLIG_THEMA
Isoform
PDB entities 2
Chains and sequence ranges Author chain B; PDBConstruct 5–75; UniProt 117–187 Author chain D; PDBConstruct 5–75; UniProt 117–187 Author chain F; PDBConstruct 5–75; UniProt 117–187 Author chain H; PDBConstruct 5–75; UniProt 117–187 Author chain J; PDBConstruct 5–75; UniProt 117–187 Author chain L; PDBConstruct 5–75; UniProt 117–187 Author chain N; PDBConstruct 5–75; UniProt 117–187 Author chain P; PDBConstruct 5–75; UniProt 117–187 Author chain R; PDBConstruct 5–75; UniProt 117–187 Author chain T; PDBConstruct 5–75; UniProt 117–187 Author chain V; PDBConstruct 5–75; UniProt 117–187

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 4qrm

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 4qrm
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2. Structure Basics 2. Structure Basics

Entry ID entry_id4qrm
Deposition date deposition_date2014-07-01
Structure title titlecrystal structure of a binary complex of FliM-FliG middle domains from T.maritima
Keywords keywordsFlagellar rotor proteins, PROTEIN BINDING; PROTEIN BINDING
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier57.83
Radius of gyration Rg (electron density) rg_electron57.81
Forward intensity I(0) i01318830000.00
Molecular weight molecular_weight322920.0 kDa
Excluded volume excluded_volume411710 ų
Envelope volume envelope_volume620420 ų
Hydration-shell volume shell_volume92558 ų
Envelope diameter envelope_diameter214.0
Shell Rg shell_rg56.91
Envelope Rg envelope_rg56.51
Shape Rg shape_rg57.80
Total Rg total_rg57.82
Total atoms total_atoms22777
Residues n_residues2837
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax193.8
Rg (real space) rg_real57.79
Rg uncertainty (real space) rg_real_error1.56
I(0) (real space) i0_real1.3190e+09
I(0) uncertainty (real space) i0_real_error2.3580e+07
Rg (reciprocal space) rg_reciprocal57.84
I(0) (reciprocal space) i0_reciprocal1319000000.0000
Solution quality estimate total_estimate0.8558
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary79.0
Skewness Skewness skewness0.285
Kurtosis Kurtosis kurtosis-0.179
Angular range angular_range— – 0.1350 −1
Current regularization parameter α current_alpha0.0001
Highest regularization parameter α highest_alpha59860000.0000
Real-space data points n_real_points28
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.813; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 1.000; Smooth: 0.681

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (2)

8. Citations (1)

9. Files and Curves (10)