4wz6

Human CFTR aa389-678 (NBD1), deltaF508 with three solubilizing mutations, bound ATP

Method: X-RAY DIFFRACTION Dmax: 70.2 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

Cystic fibrosis transmembrane conductance regulator

Homo sapiens

UniProt P13569

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein monomer Monomer Protein × 1 PDB declaration: monomeric(1) Consistent with protein copy count Chain A; UniProt 389–678 Fragment:UNP residues 389-678 Mutation:F429S, F494N, deltaF508, Q637R ATP ADENOSINE-5'-TRIPHOSPHATE × 1 MG MAGNESIUM ION × 1 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, SITTING DROP;pH 8.5;283 K;0.2M Magnesium Chloride, 0.1M Tris-HCl pH8.5, 33% PEG 4000 Resolution 2.05 Å R-free 0.239

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

52 other PDB entries and 70 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name CFTR_HUMAN
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 2–290; UniProt 389–678

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 4wz6

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 4wz6
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2. Structure Basics 2. Structure Basics

Entry ID entry_id4wz6
Deposition date deposition_date2014-11-18
Structure title titleHuman CFTR aa389-678 (NBD1), deltaF508 with three solubilizing mutations, bound ATP
Keywords keywordsATPase, hydrolase, ATP/ADP binding, ATP binding Protein; ATP binding Protein
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier20.20
Radius of gyration Rg (electron density) rg_electron19.38
Forward intensity I(0) i015120600.00
Molecular weight molecular_weight29198.0 kDa
Excluded volume excluded_volume36569 ų
Envelope volume envelope_volume43668 ų
Hydration-shell volume shell_volume19150 ų
Envelope diameter envelope_diameter70.6
Shell Rg shell_rg25.60
Envelope Rg envelope_rg19.99
Shape Rg shape_rg19.43
Total Rg total_rg20.14
Total atoms total_atoms2046
Residues n_residues258
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax70.2
Rg (real space) rg_real20.18
Rg uncertainty (real space) rg_real_error0.44
I(0) (real space) i0_real1.5120e+07
I(0) uncertainty (real space) i0_real_error1.8850e+05
Rg (reciprocal space) rg_reciprocal20.18
I(0) (reciprocal space) i0_reciprocal15120000.0000
Solution quality estimate total_estimate0.8626
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary23.1
Skewness Skewness skewness0.366
Kurtosis Kurtosis kurtosis-0.194
Angular range angular_range— – 0.3950 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha3472000.0000
Real-space data points n_real_points71
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.743; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.988; Smooth: 0.992

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (4)

7. Fold Classification (SCOP + CATH) 2 domains

SCOP 2.08 (1 domains)

Domain ID domain_idd4wz6a_
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.37 — P-loop containing nucleoside triphosphate hydrolases
Superfamily Superfamily superfamilyc.37.1 — P-loop containing nucleoside triphosphate hydrolases
Family Family familyc.37.1.12 — ABC transporter ATPase domain-like

CATH v4.4 (1 domains)

Domain ID domain_id4wz6A00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily300 — P-loop containing nucleotide triphosphate hydrolases

8. Citations (1)

9. Files and Curves (10)