5eoa

Crystal structure of OPTN E50K mutant and TBK1 complex

Method: X-RAY DIFFRACTION Dmax: 109.1 Å Quality: REASONABLE

1. Protein Identity and Related Structures Protein Identity & Related Structures

Optineurin

Homo sapiens

UniProt Q96CV9

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 4 PDB declaration: tetrameric(4) Consistent with protein copy count Chain A; UniProt 26–103 Chain B; UniProt 26–103 Fragment:UNP RESIDUES 26-103 Mutation:E50K Serine/threonine-protein kinase TBK1 × 2 (Q9UHD2) X-RAY DIFFRACTION X-ray crystallization conditions:EVAPORATION;pH 6;291.5 K;0.1M MES monohydrate pH 6.0, 14% w/V Polyethylene glycol 4000 Resolution 2.50 Å R-free 0.267

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

13 other PDB entries and 18 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name OPTN_HUMAN
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 5–82; UniProt 26–103 Author chain B; PDBConstruct 5–82; UniProt 26–103

Serine/threonine-protein kinase TBK1

Homo sapiens

UniProt Q9UHD2

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 4 PDB declaration: tetrameric(4) Consistent with protein copy count Chain C; UniProt 677–729 Chain D; UniProt 677–729 Fragment:UNP RESIDUES 677-729 Optineurin × 2 (Q96CV9) X-RAY DIFFRACTION X-ray crystallization conditions:EVAPORATION;pH 6;291.5 K;0.1M MES monohydrate pH 6.0, 14% w/V Polyethylene glycol 4000 Resolution 2.50 Å R-free 0.267

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

24 other PDB entries and 28 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name TBK1_HUMAN
Isoform
PDB entities 2
Chains and sequence ranges Author chain C; PDBConstruct 5–57; UniProt 677–729 Author chain D; PDBConstruct 5–57; UniProt 677–729

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 5eoa

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 5eoa
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2. Structure Basics 2. Structure Basics

Entry ID entry_id5eoa
Deposition date deposition_date2015-11-10
Structure title titleCrystal structure of OPTN E50K mutant and TBK1 complex
Keywords keywordsOptineurin, TBK1, POAG, ALS, PROTEIN BINDING-TRANSFERASE complex; PROTEIN BINDING/TRANSFERASE
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier27.53
Radius of gyration Rg (electron density) rg_electron28.60
Forward intensity I(0) i012763500.00
Molecular weight molecular_weight26775.0 kDa
Excluded volume excluded_volume33443 ų
Envelope volume envelope_volume43257 ų
Hydration-shell volume shell_volume15721 ų
Envelope diameter envelope_diameter107.6
Shell Rg shell_rg29.03
Envelope Rg envelope_rg29.99
Shape Rg shape_rg28.58
Total Rg total_rg28.70
Total atoms total_atoms1869
Residues n_residues229
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax109.1
Rg (real space) rg_real28.45
Rg uncertainty (real space) rg_real_error1.66
I(0) (real space) i0_real1.2760e+07
I(0) uncertainty (real space) i0_real_error2.1130e+05
Rg (reciprocal space) rg_reciprocal28.17
I(0) (reciprocal space) i0_reciprocal12760000.0000
Solution quality estimate total_estimate0.6419
Solution quality rating solution_quality REASONABLE a REASONABLE solution
P(r) peaks n_peaks1
Primary peak position r_peak_primary18.8
Skewness Skewness skewness0.821
Kurtosis Kurtosis kurtosis0.036
Angular range angular_range— – 0.2900 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha2486000.0000
Real-space data points n_real_points59
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.124; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.018; Smooth: 0.949

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (3)

8. Citations (1)

9. Files and Curves (10)