5vh9

Cryo-EM structure of yeast cytoplasmic dynein-1 with Lis1 and ATP

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Dynein heavy chain, cytoplasmic

Saccharomyces cerevisiae

UniProt P36022

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 2 Nuclear distribution protein PAC1 × 1 (A6ZPA6) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name DYHC_YEAST
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–1581; UniProt 1448–3028 Author chain A; PDBConstruct 1582–2376; UniProt 3298–4092

Nuclear distribution protein PAC1

Saccharomyces cerevisiae

UniProt A6ZPA6

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 2 Dynein heavy chain, cytoplasmic × 1 (P36022) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name LIS1_YEAS7
Isoform —
PDB entities 2
Chains and sequence ranges Author chain B; PDBConstruct 1–354; UniProt 140–493

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id5vh9
Deposition date deposition_date2017-04-12
Structure title titleCryo-EM structure of yeast cytoplasmic dynein-1 with Lis1 and ATP
Keywords keywordscytoplasmic dynein, lis1, MOTOR PROTEIN; MOTOR PROTEIN
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

5vh9__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

5vh9__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

5vh9__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)52.87 Å
Rg (electron density)52.54 Å
Total Rg52.72 Å
Atom count41285
Residues2730
Excluded volume395210 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 5vh9__assembly_1__model_1 dimeric (2) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (2)

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7. Citations (1)