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4akh

Dynein Motor Domain - AMPPNP complex

Method: X-RAY DIFFRACTION
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1. Protein Identity and Related Structures Protein Identity & Related Structures

GLUTATHIONE S-TRANSFERASE CLASS-MU 26 KDA ISOZYME, DYNEIN HEAVY CHAIN CYTOPLASMIC

SACCHAROMYCES CEREVISIAE

UniProt P08515

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Insufficient information Monomer Protein 1 ADENOSINE-5'-TRIPHOSPHATE × 1 PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER × 1 SULFATE ION × 2 MAGNESIUM ION × 1 Consistent with protein count
2 Insufficient information Monomer Protein 1 ADENOSINE-5'-TRIPHOSPHATE × 1 PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER × 1 SULFATE ION × 2 MAGNESIUM ION × 1 Consistent with protein count

Other States of the Same Protein in the Database

Monomer
1b8x

1 assemblies

Homodimer
1b8x 1bg5 1gne 1gta 1gtb 1m99 1m9a 1m9b 1u87 1u88 1ua5 1y6e

23 assemblies; showing the first 12

Homotetramer

None

Other homooligomers

None

Heteromeric or nucleic-acid complex
1dug 3qmz 3qmz 4ai6 4akg 4akh 4akh 4aki 4ecb 4ecc 5gzz 7al7

47 assemblies; showing the first 12

View Construct and Data Evidence
UniProt name GST26_SCHJA
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A； PDBConstruct 1–217； UniProt 2–218 Author chain B； PDBConstruct 1–217； UniProt 2–218

GLUTATHIONE S-TRANSFERASE CLASS-MU 26 KDA ISOZYME, DYNEIN HEAVY CHAIN CYTOPLASMIC

SACCHAROMYCES CEREVISIAE

UniProt P36022

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Insufficient information Monomer Protein 1 ADENOSINE-5'-TRIPHOSPHATE × 1 PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER × 1 SULFATE ION × 2 MAGNESIUM ION × 1 Consistent with protein count
2 Insufficient information Monomer Protein 1 ADENOSINE-5'-TRIPHOSPHATE × 1 PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER × 1 SULFATE ION × 2 MAGNESIUM ION × 1 Consistent with protein count

Other States of the Same Protein in the Database

Monomer
6kjn 6kjo 9di3 9diu 9djy 9dkd 9dke 9dkj 9mfv 9mfw 9mfx

11 assemblies

Homodimer
5afr

1 assemblies

Homotetramer

None

Other homooligomers

None

Heteromeric or nucleic-acid complex
3qmz 3qmz 4ai6 4akg 4akh 4akh 4aki 4w8f 4w8f 4w8f 5vh9 5vlj

32 assemblies; showing the first 12

View Construct and Data Evidence
UniProt name DYHC_YEAST
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A； PDBConstruct 220–1894； UniProt 1364–3038 Author chain A； PDBConstruct 1895–2695； UniProt 3292–4092 Author chain B； PDBConstruct 220–1894； UniProt 1364–3038 Author chain B； PDBConstruct 1895–2695； UniProt 3292–4092

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id4akh
Deposition date deposition_date2012-02-22
Structure title titleDynein Motor Domain - AMPPNP complex
Keywords keywordsMOTOR PROTEIN, MOTOR PROTEIN-TRANSFERASE COMPLEX, AAA+ PROTEIN, ASCE PROTEIN, MOTOR PROTEIN P-LOOP NTPASE, CYTOSKELETAL MOTOR; MOTOR PROTEIN
Experimental Method methodX-RAY DIFFRACTION
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

4akh__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

4akh__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

4akh__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg（Guinier）49.38 Å
Rg (electron density)48.48 Å
Total Rg48.67 Å
Atom count20821
Residues2650
Excluded volume371490 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 4akh__assembly_1__model_1 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
2 1 4akh__assembly_2__model_1 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (5)

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6. Fold Classification (SCOP + CATH) 32 domains

CATH v4.4 (32 domains)

Domain ID domain_id4akhA01
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology1050 — Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2
Homologous superfamily homologous superfamily130 —
Domain ID domain_id4akhA02
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology140 — Butyryl-CoA Dehydrogenase, subunit A; domain 3
Homologous superfamily homologous superfamily100 — Dynein motor heavy chain, linker domain, N-terminal subdomain
Domain ID domain_id4akhA03
Class class3 — Alpha Beta
Architecture architecture20 — Alpha-Beta Barrel
Topology topology180 — Split barrel-like
Homologous superfamily homologous superfamily20 — Dynein motor heavy chain, linker domain, subdomain 3
Domain ID domain_id4akhA04
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology58 — Methane Monooxygenase Hydroxylase; Chain G, domain 1
Homologous superfamily homologous superfamily1120 — Dynein motor heavy chain, linker domain, subdomain 4
Domain ID domain_id4akhA05
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily300 — P-loop containing nucleotide triphosphate hydrolases
Domain ID domain_id4akhA06
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology8 — Helicase, Ruva Protein; domain 3
Homologous superfamily homologous superfamily710 — Dynein motor, AAA1 domain, small subdomain
Domain ID domain_id4akhA07
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily300 — P-loop containing nucleotide triphosphate hydrolases
Domain ID domain_id4akhA08
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology472 — Cyclin A; domain 1
Homologous superfamily homologous superfamily130 — Dynein motor, AAA2 domain, small subdomain
Domain ID domain_id4akhA09
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily300 — P-loop containing nucleotide triphosphate hydrolases
Domain ID domain_id4akhA10
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology920 — Histone Acetyltransferase; Chain A
Homologous superfamily homologous superfamily30 —
Domain ID domain_id4akhA11
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology920 — Histone Acetyltransferase; Chain A
Homologous superfamily homologous superfamily20 —
Domain ID domain_id4akhA12
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily300 — P-loop containing nucleotide triphosphate hydrolases
Domain ID domain_id4akhA13
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology8 — Helicase, Ruva Protein; domain 3
Homologous superfamily homologous superfamily740 —
Domain ID domain_id4akhA14
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology1280 — Monooxygenase
Homologous superfamily homologous superfamily160 —
Domain ID domain_id4akhA15
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily300 — P-loop containing nucleotide triphosphate hydrolases
Domain ID domain_id4akhA16
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology8 — Helicase, Ruva Protein; domain 3
Homologous superfamily homologous superfamily720 — Region D6 of dynein motor
Domain ID domain_id4akhB01
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology1050 — Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2
Homologous superfamily homologous superfamily130 —
Domain ID domain_id4akhB02
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology140 — Butyryl-CoA Dehydrogenase, subunit A; domain 3
Homologous superfamily homologous superfamily100 — Dynein motor heavy chain, linker domain, N-terminal subdomain
Domain ID domain_id4akhB03
Class class3 — Alpha Beta
Architecture architecture20 — Alpha-Beta Barrel
Topology topology180 — Split barrel-like
Homologous superfamily homologous superfamily20 — Dynein motor heavy chain, linker domain, subdomain 3
Domain ID domain_id4akhB04
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology58 — Methane Monooxygenase Hydroxylase; Chain G, domain 1
Homologous superfamily homologous superfamily1120 — Dynein motor heavy chain, linker domain, subdomain 4
Domain ID domain_id4akhB05
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily300 — P-loop containing nucleotide triphosphate hydrolases
Domain ID domain_id4akhB06
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology8 — Helicase, Ruva Protein; domain 3
Homologous superfamily homologous superfamily710 — Dynein motor, AAA1 domain, small subdomain
Domain ID domain_id4akhB07
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily300 — P-loop containing nucleotide triphosphate hydrolases
Domain ID domain_id4akhB08
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology472 — Cyclin A; domain 1
Homologous superfamily homologous superfamily130 — Dynein motor, AAA2 domain, small subdomain
Domain ID domain_id4akhB09
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily300 — P-loop containing nucleotide triphosphate hydrolases
Domain ID domain_id4akhB10
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology920 — Histone Acetyltransferase; Chain A
Homologous superfamily homologous superfamily30 —
Domain ID domain_id4akhB11
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology920 — Histone Acetyltransferase; Chain A
Homologous superfamily homologous superfamily20 —
Domain ID domain_id4akhB12
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily300 — P-loop containing nucleotide triphosphate hydrolases
Domain ID domain_id4akhB13
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology8 — Helicase, Ruva Protein; domain 3
Homologous superfamily homologous superfamily740 —
Domain ID domain_id4akhB14
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology1280 — Monooxygenase
Homologous superfamily homologous superfamily160 —
Domain ID domain_id4akhB15
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily300 — P-loop containing nucleotide triphosphate hydrolases
Domain ID domain_id4akhB16
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology8 — Helicase, Ruva Protein; domain 3
Homologous superfamily homologous superfamily720 — Region D6 of dynein motor
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7. Citations (1)