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5w1m

MACV GP1 CR1-07 Fab complex

Method: X-RAY DIFFRACTION
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1. Protein Identity and Related Structures Protein Identity & Related Structures

CR1-07 Fab light chain

Homo sapiens

UniProt Q0KKI6

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 3 其他Polymer 1 CR1-07 Fab heavy chain × 1 （Q6N089） Pre-glycoprotein polyprotein GP complex × 1 （Q8AZ57） 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose × 1 Consistent with protein count
2 Protein heterocomplex Heteromer Protein 3 CR1-07 Fab heavy chain × 1 （Q6N089） Pre-glycoprotein polyprotein GP complex × 1 （Q8AZ57） 2-acetamido-2-deoxy-beta-D-glucopyranose × 1 Consistent with protein count
3 Other combination Heteromer Protein 3 其他Polymer 1 CR1-07 Fab heavy chain × 1 （Q6N089） Pre-glycoprotein polyprotein GP complex × 1 （Q8AZ57） 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose × 1 beta-D-mannopyranose × 1 Consistent with protein count
4 Other combination Heteromer Protein 3 其他Polymer 1 CR1-07 Fab heavy chain × 1 （Q6N089） Pre-glycoprotein polyprotein GP complex × 1 （Q8AZ57） beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose × 1 Consistent with protein count

Other States of the Same Protein in the Database

Monomer

None

Homodimer

None

Homotetramer

None

Other homooligomers

None

Heteromeric or nucleic-acid complex
5vzx 5vzx 5vzx 5vzy 5w1m 5w1m 5w1m 5w1m

8 assemblies

View Construct and Data Evidence
UniProt name Q0KKI6_HUMAN
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A； PDBConstruct 115–221； UniProt 112–218 Author chain C； PDBConstruct 115–221； UniProt 112–218 Author chain E； PDBConstruct 115–221； UniProt 112–218 Author chain G； PDBConstruct 115–221； UniProt 112–218

CR1-07 Fab heavy chain

Homo sapiens

UniProt Q6N089

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 3 其他Polymer 1 CR1-07 Fab light chain × 1 （Q0KKI6） Pre-glycoprotein polyprotein GP complex × 1 （Q8AZ57） 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose × 1 Consistent with protein count
2 Protein heterocomplex Heteromer Protein 3 CR1-07 Fab light chain × 1 （Q0KKI6） Pre-glycoprotein polyprotein GP complex × 1 （Q8AZ57） 2-acetamido-2-deoxy-beta-D-glucopyranose × 1 Consistent with protein count
3 Other combination Heteromer Protein 3 其他Polymer 1 CR1-07 Fab light chain × 1 （Q0KKI6） Pre-glycoprotein polyprotein GP complex × 1 （Q8AZ57） 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose × 1 beta-D-mannopyranose × 1 Consistent with protein count
4 Other combination Heteromer Protein 3 其他Polymer 1 CR1-07 Fab light chain × 1 （Q0KKI6） Pre-glycoprotein polyprotein GP complex × 1 （Q8AZ57） beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose × 1 Consistent with protein count

Other States of the Same Protein in the Database

Monomer

None

Homodimer

None

Homotetramer

None

Other homooligomers

None

Heteromeric or nucleic-acid complex
1u6a 2oqj 2oqj 2oqj 3mnv 3mnv 3qct 3qcu 3qcu 3qcv 3qcv 4nm4

30 assemblies; showing the first 12

View Construct and Data Evidence
UniProt name Q6N089_HUMAN
Isoform —
PDB entities 2
Chains and sequence ranges Author chain B； PDBConstruct 124–226； UniProt 143–245 Author chain D； PDBConstruct 124–226； UniProt 143–245 Author chain F； PDBConstruct 124–226； UniProt 143–245 Author chain H； PDBConstruct 124–226； UniProt 143–245

Pre-glycoprotein polyprotein GP complex

Machupo virus

UniProt Q8AZ57

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 3 其他Polymer 1 CR1-07 Fab light chain × 1 （Q0KKI6） CR1-07 Fab heavy chain × 1 （Q6N089） 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose × 1 Consistent with protein count
2 Protein heterocomplex Heteromer Protein 3 CR1-07 Fab light chain × 1 （Q0KKI6） CR1-07 Fab heavy chain × 1 （Q6N089） 2-acetamido-2-deoxy-beta-D-glucopyranose × 1 Consistent with protein count
3 Other combination Heteromer Protein 3 其他Polymer 1 CR1-07 Fab light chain × 1 （Q0KKI6） CR1-07 Fab heavy chain × 1 （Q6N089） 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose × 1 beta-D-mannopyranose × 1 Consistent with protein count
4 Other combination Heteromer Protein 3 其他Polymer 1 CR1-07 Fab light chain × 1 （Q0KKI6） CR1-07 Fab heavy chain × 1 （Q6N089） beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose × 1 Consistent with protein count

Other States of the Same Protein in the Database

Monomer

None

Homodimer

None

Homotetramer

None

Other homooligomers

None

Heteromeric or nucleic-acid complex
3kas 5w1m 5w1m 5w1m 5w1m 6s9j 6s9j 6s9j 6s9j 9ghi 9mt2

11 assemblies

View Construct and Data Evidence
UniProt name Q8AZ57_MACHU
Isoform —
PDB entities 3
Chains and sequence ranges Author chain Q； PDBConstruct 1–152； UniProt 87–238 Author chain R； PDBConstruct 1–152； UniProt 87–238 Author chain S； PDBConstruct 1–152； UniProt 87–238 Author chain T； PDBConstruct 1–152； UniProt 87–238

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id5w1m
Deposition date deposition_date2017-06-03
Structure title titleMACV GP1 CR1-07 Fab complex
Keywords keywordsFab, antibody, Machupo virus, arenavirus, VIRAL PROTEIN-IMMUNE SYSTEM complex; VIRAL PROTEIN/IMMUNE SYSTEM
Experimental Method methodX-RAY DIFFRACTION
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

5w1m__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

5w1m__assembly_1__model_1 | I(q)

10-2 10-1 105 106 107 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

5w1m__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg（Guinier）31.53 Å
Rg (electron density)31.41 Å
Total Rg31.91 Å
Atom count4612
Residues591
Excluded volume81534 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 5w1m__assembly_1__model_1 trimeric （3） Success 4.1.3-1-20251215 (887e7ef) View Download
2 1 5w1m__assembly_2__model_1 trimeric （3） Success 4.1.3-1-20251215 (887e7ef) View Download
3 1 5w1m__assembly_3__model_1 trimeric （3） Success 4.1.3-1-20251215 (887e7ef) View Download
4 1 5w1m__assembly_4__model_1 trimeric （3） Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (7)

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6. Fold Classification (SCOP + CATH) 12 domains

CATH v4.4 (12 domains)

Domain ID domain_id5w1mA01
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id5w1mA02
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id5w1mB02
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id5w1mC01
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id5w1mC02
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id5w1mD02
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id5w1mE01
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id5w1mE02
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id5w1mF02
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id5w1mG01
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id5w1mG02
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id5w1mH02
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
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7. Citations (1)